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Lsi05G002870 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G002870
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionATP-dependent Clp protease proteolytic subunit
Genome locationchr05:3700624..3701160
RNA-Seq ExpressionLsi05G002870
SyntenyLsi05G002870
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0009526 - plastid envelope (cellular component)
GO:0009570 - chloroplast stroma (cellular component)
GO:0004176 - ATP-dependent peptidase activity (molecular function)
GO:0004252 - serine-type endopeptidase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060718.1 ATP-dependent Clp protease proteolytic subunit 3 [Cucumis melo var. makuwa]2.3e-1760.82Show/hide
Query:  SHFTISTPLKHP-------------MAAIPLLILLE-SEIRFRRTLYSNWDVLDNYSASSAPSLPQFGELDTTNMLLRQRIIFLGSQAISRTISSYF
        SH  ISTP  H                ++P+L     S    RRTL SNWDVL NYSASSAPSLP+F ELDTTNMLLRQRIIFLGSQA+S TISSYF
Subjt:  SHFTISTPLKHP-------------MAAIPLLILLE-SEIRFRRTLYSNWDVLDNYSASSAPSLPQFGELDTTNMLLRQRIIFLGSQAISRTISSYF
KAG6606994.1 ATP-dependent Clp protease proteolytic subunit 3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]8.9e-1452Show/hide
Query:  HITFPSHFTISTPLKH-----------------PMAAIPLLILLESEIRFRRTLYSNWDVLDNYSASSAPSLPQFGELDTTNMLLRQRIIFLGSQAISRT
        H    S F +STP KH                 P+AA+   +   S    RRTL SNWDVL NYSA+SAP+LP+F ELDTTNMLLRQRIIFLGSQ    T
Subjt:  HITFPSHFTISTPLKH-----------------PMAAIPLLILLESEIRFRRTLYSNWDVLDNYSASSAPSLPQFGELDTTNMLLRQRIIFLGSQAISRT
KAG7036696.1 ATP-dependent Clp protease proteolytic subunit 3, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]8.9e-1452Show/hide
Query:  HITFPSHFTISTPLKH-----------------PMAAIPLLILLESEIRFRRTLYSNWDVLDNYSASSAPSLPQFGELDTTNMLLRQRIIFLGSQAISRT
        H    S F +STP KH                 P+AA+   +   S    RRTL SNWDVL NYSA+SAP+LP+F ELDTTNMLLRQRIIFLGSQ    T
Subjt:  HITFPSHFTISTPLKH-----------------PMAAIPLLILLESEIRFRRTLYSNWDVLDNYSASSAPSLPQFGELDTTNMLLRQRIIFLGSQAISRT
XP_022948597.1 ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Cucurbita moschata]8.9e-1452Show/hide
Query:  HITFPSHFTISTPLKH-----------------PMAAIPLLILLESEIRFRRTLYSNWDVLDNYSASSAPSLPQFGELDTTNMLLRQRIIFLGSQAISRT
        H    S F +STP KH                 P+AA+   +   S    RRTL SNWDVL NYSA+SAP+LP+F ELDTTNMLLRQRIIFLGSQ    T
Subjt:  HITFPSHFTISTPLKH-----------------PMAAIPLLILLESEIRFRRTLYSNWDVLDNYSASSAPSLPQFGELDTTNMLLRQRIIFLGSQAISRT
XP_038902354.1 ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Benincasa hispida]5.2e-1455.56Show/hide
Query:  SHFTISTPLKHPMA------------AIPLLILLESEIRFRRTLYSNWDVLDNYSASSAPSLPQFGELDTTNMLLRQRIIFLGSQAISRT
        S+F IS P KH               ++P++    +    RRTL S+WDVLDNYSASSAPSLP+F ELDTTNMLLRQRIIFLGSQ    T
Subjt:  SHFTISTPLKHPMA------------AIPLLILLESEIRFRRTLYSNWDVLDNYSASSAPSLPQFGELDTTNMLLRQRIIFLGSQAISRT
TrEMBL top hitse value%identityAlignment
A0A1S3C615 ATP-dependent Clp protease proteolytic subunit1.6e-1358.62Show/hide
Query:  SHFTISTPLKHP-------------MAAIPLLILLE-SEIRFRRTLYSNWDVLDNYSASSAPSLPQFGELDTTNMLLRQRIIFLGSQ
        SH  ISTP  H                ++P+L     S    RRTL SNWDVL NYSASSAPSLP+F ELDTTNMLLRQRIIFLGSQ
Subjt:  SHFTISTPLKHP-------------MAAIPLLILLE-SEIRFRRTLYSNWDVLDNYSASSAPSLPQFGELDTTNMLLRQRIIFLGSQ
A0A5A7UZN2 ATP-dependent Clp protease proteolytic subunit1.1e-1760.82Show/hide
Query:  SHFTISTPLKHP-------------MAAIPLLILLE-SEIRFRRTLYSNWDVLDNYSASSAPSLPQFGELDTTNMLLRQRIIFLGSQAISRTISSYF
        SH  ISTP  H                ++P+L     S    RRTL SNWDVL NYSASSAPSLP+F ELDTTNMLLRQRIIFLGSQA+S TISSYF
Subjt:  SHFTISTPLKHP-------------MAAIPLLILLE-SEIRFRRTLYSNWDVLDNYSASSAPSLPQFGELDTTNMLLRQRIIFLGSQAISRTISSYF
A0A6J1CQN6 ATP-dependent Clp protease proteolytic subunit4.8e-1353.12Show/hide
Query:  HITFPSHFTISTPLKH-------------PMAAIPLLILLESEIRFRRTLYSNWDVLDNYSASSAPSLPQFGELDTTNMLLRQRIIFLGSQAISRT
        H    S F + TP KH             P +A PL+    S    RRTL SNWDVL+N+SA+SAPSL +F ELDTTNMLLRQRIIFLGSQ    T
Subjt:  HITFPSHFTISTPLKH-------------PMAAIPLLILLESEIRFRRTLYSNWDVLDNYSASSAPSLPQFGELDTTNMLLRQRIIFLGSQAISRT
A0A6J1G9P1 ATP-dependent Clp protease proteolytic subunit4.3e-1452Show/hide
Query:  HITFPSHFTISTPLKH-----------------PMAAIPLLILLESEIRFRRTLYSNWDVLDNYSASSAPSLPQFGELDTTNMLLRQRIIFLGSQAISRT
        H    S F +STP KH                 P+AA+   +   S    RRTL SNWDVL NYSA+SAP+LP+F ELDTTNMLLRQRIIFLGSQ    T
Subjt:  HITFPSHFTISTPLKH-----------------PMAAIPLLILLESEIRFRRTLYSNWDVLDNYSASSAPSLPQFGELDTTNMLLRQRIIFLGSQAISRT
A0A6J1KEX5 ATP-dependent Clp protease proteolytic subunit1.3e-1351Show/hide
Query:  HITFPSHFTISTPLKH-----------------PMAAIPLLILLESEIRFRRTLYSNWDVLDNYSASSAPSLPQFGELDTTNMLLRQRIIFLGSQAISRT
        H    S F +STP KH                 P+AA+   +   S    RRTL SNWDVL NYSA+S P+LP+F ELDTTNMLLRQRIIFLGSQ    T
Subjt:  HITFPSHFTISTPLKH-----------------PMAAIPLLILLESEIRFRRTLYSNWDVLDNYSASSAPSLPQFGELDTTNMLLRQRIIFLGSQAISRT
SwissProt top hitse value%identityAlignment
Q9SXJ6 ATP-dependent Clp protease proteolytic subunit 3, chloroplastic7.6e-0860.38Show/hide
Query:  RRTLYSNWDVLD---NYSASSAPSLPQFGELDTTNMLLRQRIIFLGSQAISRT
        R+TL SNWDV     +  A S   LP F ELDTTNMLLRQRI+FLGSQ    T
Subjt:  RRTLYSNWDVLD---NYSASSAPSLPQFGELDTTNMLLRQRIIFLGSQAISRT
Arabidopsis top hitse value%identityAlignment
AT1G66670.1 CLP protease proteolytic subunit 35.4e-0960.38Show/hide
Query:  RRTLYSNWDVLD---NYSASSAPSLPQFGELDTTNMLLRQRIIFLGSQAISRT
        R+TL SNWDV     +  A S   LP F ELDTTNMLLRQRI+FLGSQ    T
Subjt:  RRTLYSNWDVLD---NYSASSAPSLPQFGELDTTNMLLRQRIIFLGSQAISRT

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGATCCATATAACTTTCCCTTCTCACTTTACAATTTCTACTCCTTTGAAGCACCCCATGGCGGCAATTCCACTTCTAATACTTTTAGAATCTGAAATTCGGTTCCG
ACGGACTTTATACAGTAATTGGGACGTTTTGGACAATTATTCTGCATCTTCCGCTCCATCGCTGCCTCAATTCGGAGAGCTTGACACTACCAACATGCTTCTCCGCCAGC
GAATCATCTTCTTGGGTTCTCAGGCAATCTCTCGAACTATTTCCTCATATTTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGACGATCCATATAACTTTCCCTTCTCACTTTACAATTTCTACTCCTTTGAAGCACCCCATGGCGGCAATTCCACTTCTAATACTTTTAGAATCTGAAATTCGGTTCCG
ACGGACTTTATACAGTAATTGGGACGTTTTGGACAATTATTCTGCATCTTCCGCTCCATCGCTGCCTCAATTCGGAGAGCTTGACACTACCAACATGCTTCTCCGCCAGC
GAATCATCTTCTTGGGTTCTCAGGCAATCTCTCGAACTATTTCCTCATATTTCTGA
Protein sequenceShow/hide protein sequence
MTIHITFPSHFTISTPLKHPMAAIPLLILLESEIRFRRTLYSNWDVLDNYSASSAPSLPQFGELDTTNMLLRQRIIFLGSQAISRTISSYF