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Lsi05G002960 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G002960
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionprotein AAR2 homolog
Genome locationchr05:3772349..3777059
RNA-Seq ExpressionLsi05G002960
SyntenyLsi05G002960
Gene Ontology termsNA
InterPro domainsIPR007946 - A1 cistron-splicing factor, AAR2
IPR038514 - AAR2, C-terminal domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008457081.1 PREDICTED: protein AAR2 homolog isoform X1 [Cucumis melo]4.2e-4688.18Show/hide
Query:  FIKVIYYQLKLGLEKDHSNDTAGSSSTFLDESWFSADSFLYHLCKDFFSLVLEAPVVDGDLLTWTRKLKELLENRLDWKFQNNIATDGISFDEDDEFAPV
        FIKVIY+QLK GLEKD SND AGSSS  +DESWFSADSFL+HLCKDFFSLVLEAPVVDGDLLTWTRKLKELLENRL WKF +NIATDGISFDEDDEFAPV
Subjt:  FIKVIYYQLKLGLEKDHSNDTAGSSSTFLDESWFSADSFLYHLCKDFFSLVLEAPVVDGDLLTWTRKLKELLENRLDWKFQNNIATDGISFDEDDEFAPV

Query:  VVRMDDSESS
        VVR+D+SESS
Subjt:  VVRMDDSESS

XP_011660184.2 protein AAR2 homolog isoform X2 [Cucumis sativus]2.5e-4690Show/hide
Query:  FIKVIYYQLKLGLEKDHSNDTAGSSSTFLDESWFSADSFLYHLCKDFFSLVLEAPVVDGDLLTWTRKLKELLENRLDWKFQNNIATDGISFDEDDEFAPV
        FIKVIY+QLK GLEKD SND AGSSS  LDESWFSADSFL+HLCKDFFSLVLEAPVVDGDLLTWTRKLKELLENRL WKFQ NIA DGISFDEDDEFAPV
Subjt:  FIKVIYYQLKLGLEKDHSNDTAGSSSTFLDESWFSADSFLYHLCKDFFSLVLEAPVVDGDLLTWTRKLKELLENRLDWKFQNNIATDGISFDEDDEFAPV

Query:  VVRMDDSESS
        VVRMDDS SS
Subjt:  VVRMDDSESS

XP_038906828.1 protein AAR2 homolog isoform X1 [Benincasa hispida]1.7e-4789.09Show/hide
Query:  FIKVIYYQLKLGLEKDHSNDTAGSSSTFLDESWFSADSFLYHLCKDFFSLVLEAPVVDGDLLTWTRKLKELLENRLDWKFQNNIATDGISFDEDDEFAPV
        FIKVIY+QLK GL +D SNDT GSSST LDESWF+ADSFLY LCKDFFSLVLEAPVVDGDLLTWTRKLKELLENRL WKFQNNIA DGISFDEDDEFAPV
Subjt:  FIKVIYYQLKLGLEKDHSNDTAGSSSTFLDESWFSADSFLYHLCKDFFSLVLEAPVVDGDLLTWTRKLKELLENRLDWKFQNNIATDGISFDEDDEFAPV

Query:  VVRMDDSESS
        VVRMDDSE S
Subjt:  VVRMDDSESS

XP_038906837.1 protein AAR2 homolog isoform X2 [Benincasa hispida]1.7e-4775.18Show/hide
Query:  MFFDSISVQSSVWFGSFVSLFM-----FIKVIYYQLKLGLEKDHSNDTAGSSSTFLDESWFSADSFLYHLCKDFFSLVLEAPVVDGDLLTWTRKLKELLE
        +F    S++  + + S ++LF+     FIKVIY+QLK GL +D SNDT GSSST LDESWF+ADSFLY LCKDFFSLVLEAPVVDGDLLTWTRKLKELLE
Subjt:  MFFDSISVQSSVWFGSFVSLFM-----FIKVIYYQLKLGLEKDHSNDTAGSSSTFLDESWFSADSFLYHLCKDFFSLVLEAPVVDGDLLTWTRKLKELLE

Query:  NRLDWKFQNNIATDGISFDEDDEFAPVVVRMDDSESS
        NRL WKFQNNIA DGISFDEDDEFAPVVVRMDDSE S
Subjt:  NRLDWKFQNNIATDGISFDEDDEFAPVVVRMDDSESS

XP_038906845.1 protein AAR2 homolog isoform X3 [Benincasa hispida]1.7e-4789.09Show/hide
Query:  FIKVIYYQLKLGLEKDHSNDTAGSSSTFLDESWFSADSFLYHLCKDFFSLVLEAPVVDGDLLTWTRKLKELLENRLDWKFQNNIATDGISFDEDDEFAPV
        FIKVIY+QLK GL +D SNDT GSSST LDESWF+ADSFLY LCKDFFSLVLEAPVVDGDLLTWTRKLKELLENRL WKFQNNIA DGISFDEDDEFAPV
Subjt:  FIKVIYYQLKLGLEKDHSNDTAGSSSTFLDESWFSADSFLYHLCKDFFSLVLEAPVVDGDLLTWTRKLKELLENRLDWKFQNNIATDGISFDEDDEFAPV

Query:  VVRMDDSESS
        VVRMDDSE S
Subjt:  VVRMDDSESS

TrEMBL top hitse value%identityAlignment
A0A0A0M0D1 Uncharacterized protein1.1e-4779.7Show/hide
Query:  MFFDSISVQSSVWFGSFVS-LFMFIKVIYYQLKLGLEKDHSNDTAGSSSTFLDESWFSADSFLYHLCKDFFSLVLEAPVVDGDLLTWTRKLKELLENRLD
        ++FD   +   ++  SFV  LF FIKVIY+QLK GLEKD SND AGSSS  LDESWFSADSFL+HLCKDFFSLVLEAPVVDGDLLTWTRKLKELLENRL 
Subjt:  MFFDSISVQSSVWFGSFVS-LFMFIKVIYYQLKLGLEKDHSNDTAGSSSTFLDESWFSADSFLYHLCKDFFSLVLEAPVVDGDLLTWTRKLKELLENRLD

Query:  WKFQNNIATDGISFDEDDEFAPVVVRMDDSESS
        WKFQ NIA DGISFDEDDEFAPVVVRMDDS SS
Subjt:  WKFQNNIATDGISFDEDDEFAPVVVRMDDSESS

A0A1S3C5D7 protein AAR2 homolog isoform X12.0e-4688.18Show/hide
Query:  FIKVIYYQLKLGLEKDHSNDTAGSSSTFLDESWFSADSFLYHLCKDFFSLVLEAPVVDGDLLTWTRKLKELLENRLDWKFQNNIATDGISFDEDDEFAPV
        FIKVIY+QLK GLEKD SND AGSSS  +DESWFSADSFL+HLCKDFFSLVLEAPVVDGDLLTWTRKLKELLENRL WKF +NIATDGISFDEDDEFAPV
Subjt:  FIKVIYYQLKLGLEKDHSNDTAGSSSTFLDESWFSADSFLYHLCKDFFSLVLEAPVVDGDLLTWTRKLKELLENRLDWKFQNNIATDGISFDEDDEFAPV

Query:  VVRMDDSESS
        VVR+D+SESS
Subjt:  VVRMDDSESS

A0A1S3C5Z9 protein AAR2 homolog isoform X22.7e-4675.18Show/hide
Query:  MFFDSISVQSSVWFGSFVSLFM-----FIKVIYYQLKLGLEKDHSNDTAGSSSTFLDESWFSADSFLYHLCKDFFSLVLEAPVVDGDLLTWTRKLKELLE
        +F    S++  + + S V+LF      FIKVIY+QLK GLEKD SND AGSSS  +DESWFSADSFL+HLCKDFFSLVLEAPVVDGDLLTWTRKLKELLE
Subjt:  MFFDSISVQSSVWFGSFVSLFM-----FIKVIYYQLKLGLEKDHSNDTAGSSSTFLDESWFSADSFLYHLCKDFFSLVLEAPVVDGDLLTWTRKLKELLE

Query:  NRLDWKFQNNIATDGISFDEDDEFAPVVVRMDDSESS
        NRL WKF +NIATDGISFDEDDEFAPVVVR+D+SESS
Subjt:  NRLDWKFQNNIATDGISFDEDDEFAPVVVRMDDSESS

A0A6J1FAE8 protein AAR2 homolog6.6e-4590.2Show/hide
Query:  FIKVIYYQLKLGLEKDHSNDTAGSSSTFLDESWFSADSFLYHLCKDFFSLVLEAPVVDGDLLTWTRKLKELLENRLDWKFQNNIATDGISFDEDDEFAPV
        FIKV+Y+QLK GLEKDHSNDT G +ST LDESWFSADSFLYHLCKDFFSLVLEAPVVDGDLLTWTRKLKELLEN LDWKFQNN A+DGISFDEDDEFAPV
Subjt:  FIKVIYYQLKLGLEKDHSNDTAGSSSTFLDESWFSADSFLYHLCKDFFSLVLEAPVVDGDLLTWTRKLKELLENRLDWKFQNNIATDGISFDEDDEFAPV

Query:  VV
        VV
Subjt:  VV

A0A6J1J1Z2 protein AAR2 homolog2.5e-4477.52Show/hide
Query:  AITSMFFDSISVQSSVWFGSFVSLF-MFIKVIYYQLKLGLEKDHSNDTAGSSSTFLDESWFSADSFLYHLCKDFFSLVLEAPVVDGDLLTWTRKLKELLE
        ++ S+FF+         F +   LF  FIKVIY+QLK GLEKDHSNDT G SST LDESWFSADSFLYHLCKDFFSLVLEAPVVDGDLLTWTRKLKELLE
Subjt:  AITSMFFDSISVQSSVWFGSFVSLF-MFIKVIYYQLKLGLEKDHSNDTAGSSSTFLDESWFSADSFLYHLCKDFFSLVLEAPVVDGDLLTWTRKLKELLE

Query:  NRLDWKFQNNIATDGISFDEDDEFAPVVV
        N LDWKFQNN A DGISFDEDDEFAPVVV
Subjt:  NRLDWKFQNNIATDGISFDEDDEFAPVVV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G66510.1 AAR2 protein family1.5e-3363.55Show/hide
Query:  FIKVIYYQLKLGLEKDHSNDTAGSSSTFLDESWFSADSFLYHLCKDFFSLVLEAPVVDGDLLTWTRKLKELLENRLDWKFQNNIATDGISFDEDDEFAPV
        FIKVIY+QLK GL+K++S    G  +  LD+SW ++DSFL+ LCKDFF+LV E  VVDGDLL+WTRK KELLENRL W+FQ   A DGI F+EDDE+APV
Subjt:  FIKVIYYQLKLGLEKDHSNDTAGSSSTFLDESWFSADSFLYHLCKDFFSLVLEAPVVDGDLLTWTRKLKELLENRLDWKFQNNIATDGISFDEDDEFAPV

Query:  VVRMDDS
        V  +D+S
Subjt:  VVRMDDS

AT1G66510.2 AAR2 protein family1.5e-3363.55Show/hide
Query:  FIKVIYYQLKLGLEKDHSNDTAGSSSTFLDESWFSADSFLYHLCKDFFSLVLEAPVVDGDLLTWTRKLKELLENRLDWKFQNNIATDGISFDEDDEFAPV
        FIKVIY+QLK GL+K++S    G  +  LD+SW ++DSFL+ LCKDFF+LV E  VVDGDLL+WTRK KELLENRL W+FQ   A DGI F+EDDE+APV
Subjt:  FIKVIYYQLKLGLEKDHSNDTAGSSSTFLDESWFSADSFLYHLCKDFFSLVLEAPVVDGDLLTWTRKLKELLENRLDWKFQNNIATDGISFDEDDEFAPV

Query:  VVRMDDS
        V  +D+S
Subjt:  VVRMDDS

AT1G66510.3 AAR2 protein family1.5e-3363.55Show/hide
Query:  FIKVIYYQLKLGLEKDHSNDTAGSSSTFLDESWFSADSFLYHLCKDFFSLVLEAPVVDGDLLTWTRKLKELLENRLDWKFQNNIATDGISFDEDDEFAPV
        FIKVIY+QLK GL+K++S    G  +  LD+SW ++DSFL+ LCKDFF+LV E  VVDGDLL+WTRK KELLENRL W+FQ   A DGI F+EDDE+APV
Subjt:  FIKVIYYQLKLGLEKDHSNDTAGSSSTFLDESWFSADSFLYHLCKDFFSLVLEAPVVDGDLLTWTRKLKELLENRLDWKFQNNIATDGISFDEDDEFAPV

Query:  VVRMDDS
        V  +D+S
Subjt:  VVRMDDS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTATCCTTCCATTGATGTTGTGGAGATCTCAGTCTTTCATTGTTGTTGGTTTCTTCATCTTCATCCTCAGCATTTTGGCAAATCCAGCAATCACTTCAATGTTCTT
TGACTCAATTTCTGTTCAGAGTTCGGTTTGGTTTGGTTCGTTTGTCAGCCTCTTCATGTTCATTAAGGTTATTTACTATCAATTGAAACTTGGATTAGAGAAAGATCATT
CGAATGATACAGCAGGATCATCATCAACATTTTTGGACGAATCATGGTTTTCTGCTGATAGTTTCTTATATCATTTGTGTAAGGATTTCTTTTCATTGGTGCTAGAGGCT
CCGGTTGTTGATGGGGATCTTCTGACATGGACAAGGAAACTCAAGGAACTGTTAGAGAACAGACTGGACTGGAAATTCCAGAACAATATTGCAACTGATGGAATTTCCTT
TGATGAAGATGATGAGTTTGCTCCTGTAGTTGTGAGGATGGATGATTCTGAGTCGTCATGA
mRNA sequenceShow/hide mRNA sequence
ATGTGTATCCTTCCATTGATGTTGTGGAGATCTCAGTCTTTCATTGTTGTTGGTTTCTTCATCTTCATCCTCAGCATTTTGGCAAATCCAGCAATCACTTCAATGTTCTT
TGACTCAATTTCTGTTCAGAGTTCGGTTTGGTTTGGTTCGTTTGTCAGCCTCTTCATGTTCATTAAGGTTATTTACTATCAATTGAAACTTGGATTAGAGAAAGATCATT
CGAATGATACAGCAGGATCATCATCAACATTTTTGGACGAATCATGGTTTTCTGCTGATAGTTTCTTATATCATTTGTGTAAGGATTTCTTTTCATTGGTGCTAGAGGCT
CCGGTTGTTGATGGGGATCTTCTGACATGGACAAGGAAACTCAAGGAACTGTTAGAGAACAGACTGGACTGGAAATTCCAGAACAATATTGCAACTGATGGAATTTCCTT
TGATGAAGATGATGAGTTTGCTCCTGTAGTTGTGAGGATGGATGATTCTGAGTCGTCATGAGGTTTTATAAGTCCTTATAAAAAGATTAAATATATGTTTTAGTCCCTAA
TTTTCGGTTTTTTTTTTGTTTAGTTTTTTTTTCCAATTTAGCCCCTAATGTTTAGCCTTATTCCTAACAAGTTCCTTCCTGCACAAACAAGATATATGAAATTAATTCAG
CATAGAGTCTTAACTCAGAACATTGATAAGCTAACTTAAAGAAAAAGAAAGAATAGTTGTTGTCTGGAGAGAGCTGGGAGTTGGTTCTCCTCAACTCGAGCAATCTTCTC
AATCCTTGCACAAAAAGTCACTGATCTCGGCCCTCCATCATGTAAACCTCCTTTTGGCAACGGTATGAGCGTTCTCTTATTCTTCTAAGGTCATGTTTACTACTTTGTAA
TCAAAATTAAAATTGTTGCAGTCGTAATGGATTTTCTTCATTATTCATAATTTACATAATATTGTTTTGTTGACTAGTCTTTTATAAACGTATTTAAATCGGCCTCACTT
TTCATATTACGATTGATTGATCACGTTTACTGAAGTAAACGTGGCCAAAGGTGTCATCCTTTTTACACCTGCGCTCATAATGTGAGGTG
Protein sequenceShow/hide protein sequence
MCILPLMLWRSQSFIVVGFFIFILSILANPAITSMFFDSISVQSSVWFGSFVSLFMFIKVIYYQLKLGLEKDHSNDTAGSSSTFLDESWFSADSFLYHLCKDFFSLVLEA
PVVDGDLLTWTRKLKELLENRLDWKFQNNIATDGISFDEDDEFAPVVVRMDDSESS