CuGenDBv2

Gene ID	Lsi05G002990
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Gamma-tubulin complex component
Genome location	chr05:3826646..3833485
RNA-Seq Expression	Lsi05G002990
Synteny	Lsi05G002990
Gene Ontology terms	GO:0007020 - microtubule nucleation (biological process) GO:0000922 - spindle pole (cellular component) GO:0005815 - microtubule organizing center (cellular component) GO:0043015 - gamma-tubulin binding (molecular function)
InterPro domains	IPR007259 - Gamma-tubulin complex component protein IPR040457 - Gamma tubulin complex component, C-terminal IPR042241 - Gamma-tubulin complex, C-terminal domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0060739.1 gamma-tubulin complex component 6 isoform X2 [Cucumis melo var. makuwa]

2.6e-66

57.69

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Query:  MPDMVLLVRQNRHSKLINQEIQHFNVLVKTRHEVNHFVCVLQHYVESQLSHLSWCRFLQSLQLKYRVVVIAKDMMDLESMHMAYLTDALQTIQKRGLREE
        + DMVLLVR+NRHSKLINQEI+HFN+LVKTRHEVNHFVCVLQHYVESQL+HLS CRFLQSLQLK      AKDMMDLESMHMAYLTDAL T     L EE
Subjt:  MPDMVLLVRQNRHSKLINQEIQHFNVLVKTRHEVNHFVCVLQHYVESQLSHLSWCRFLQSLQLKYRVVVIAKDMMDLESMHMAYLTDALQTIQKRGLREE

Query:  FQVLDNEGYKHFPVLQAQIKSSQDERDNHADAPIRKNSINDLELPVMSFNQSYIRVPLFPDELAQKAGEDVILLGANLRCCFTGDMWNTQVDNAASSRRL
         Q                                              F  S I                ++    +LRCCFT DMWNTQVD+AASSRRL
Subjt:  FQVLDNEGYKHFPVLQAQIKSSQDERDNHADAPIRKNSINDLELPVMSFNQSYIRVPLFPDELAQKAGEDVILLGANLRCCFTGDMWNTQVDNAASSRRL

Query:  SGINKSQVLTIKKRFDTNMRELHLFYLKSPKVGEFGLSRLWECLNYNYHYTDTGSRRSSF
        S INK+QVL IKKRFD NM+ELHL +LKSPKVG+FGLSRLWECLNYNYHY++TG+  S +
Subjt:  SGINKSQVLTIKKRFDTNMRELHLFYLKSPKVGEFGLSRLWECLNYNYHYTDTGSRRSSF

XP_008457080.1 PREDICTED: uncharacterized protein LOC103496848 [Cucumis melo]

2.6e-66

57.69

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Query:  MPDMVLLVRQNRHSKLINQEIQHFNVLVKTRHEVNHFVCVLQHYVESQLSHLSWCRFLQSLQLKYRVVVIAKDMMDLESMHMAYLTDALQTIQKRGLREE
        + DMVLLVR+NRHSKLINQEI+HFN+LVKTRHEVNHFVCVLQHYVESQL+HLS CRFLQSLQLK      AKDMMDLESMHMAYLTDAL T     L EE
Subjt:  MPDMVLLVRQNRHSKLINQEIQHFNVLVKTRHEVNHFVCVLQHYVESQLSHLSWCRFLQSLQLKYRVVVIAKDMMDLESMHMAYLTDALQTIQKRGLREE

Query:  FQVLDNEGYKHFPVLQAQIKSSQDERDNHADAPIRKNSINDLELPVMSFNQSYIRVPLFPDELAQKAGEDVILLGANLRCCFTGDMWNTQVDNAASSRRL
         Q                                              F  S I                ++    +LRCCFT DMWNTQVD+AASSRRL
Subjt:  FQVLDNEGYKHFPVLQAQIKSSQDERDNHADAPIRKNSINDLELPVMSFNQSYIRVPLFPDELAQKAGEDVILLGANLRCCFTGDMWNTQVDNAASSRRL

Query:  SGINKSQVLTIKKRFDTNMRELHLFYLKSPKVGEFGLSRLWECLNYNYHYTDTGSRRSSF
        S INK+QVL IKKRFD NM+ELHL +LKSPKVG+FGLSRLWECLNYNYHY++TG+  S +
Subjt:  SGINKSQVLTIKKRFDTNMRELHLFYLKSPKVGEFGLSRLWECLNYNYHYTDTGSRRSSF

XP_011651193.1 uncharacterized protein LOC101209612 isoform X1 [Cucumis sativus]

6.9e-67

58.08

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Query:  MPDMVLLVRQNRHSKLINQEIQHFNVLVKTRHEVNHFVCVLQHYVESQLSHLSWCRFLQSLQLKYRVVVIAKDMMDLESMHMAYLTDALQTIQKRGLREE
        + DMVL VR+NRHSKLINQEIQHFN+LVKTRHEVNHFVCVLQHYVESQLSHLSWCRFLQSLQLK      AKDMMDLESMHMAYLTDAL T     L EE
Subjt:  MPDMVLLVRQNRHSKLINQEIQHFNVLVKTRHEVNHFVCVLQHYVESQLSHLSWCRFLQSLQLKYRVVVIAKDMMDLESMHMAYLTDALQTIQKRGLREE

Query:  FQVLDNEGYKHFPVLQAQIKSSQDERDNHADAPIRKNSINDLELPVMSFNQSYIRVPLFPDELAQKAGEDVILLGANLRCCFTGDMWNTQVDNAASSRRL
         Q +                                ++IN L                             +    +LRCCFTGDMWNTQVD+AASSRRL
Subjt:  FQVLDNEGYKHFPVLQAQIKSSQDERDNHADAPIRKNSINDLELPVMSFNQSYIRVPLFPDELAQKAGEDVILLGANLRCCFTGDMWNTQVDNAASSRRL

Query:  SGINKSQVLTIKKRFDTNMRELHLFYLKSPKVGEFGLSRLWECLNYNYHYTDTGSRRSSF
        S INK+QVL IKKRFD +++ELHL +LKSPKVG+FGLSRLWECLNYNYHY  TG+  S +
Subjt:  SGINKSQVLTIKKRFDTNMRELHLFYLKSPKVGEFGLSRLWECLNYNYHYTDTGSRRSSF

XP_038891610.1 gamma-tubulin complex component 6 isoform X1 [Benincasa hispida]

1.8e-70

58.46

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Query:  MPDMVLLVRQNRHSKLINQEIQHFNVLVKTRHEVNHFVCVLQHYVESQLSHLSWCRFLQSLQLKYRVVVIAKDMMDLESMHMAYLTDALQTIQKRGLREE
        + DMV+LVRQNRHSKLINQEIQHFNVLVKTRHEVNHFVCVLQHYVESQLSHLSWCRFLQSLQLK      AKDMMDLESMHMAYLTDAL T         
Subjt:  MPDMVLLVRQNRHSKLINQEIQHFNVLVKTRHEVNHFVCVLQHYVESQLSHLSWCRFLQSLQLKYRVVVIAKDMMDLESMHMAYLTDALQTIQKRGLREE

Query:  FQVLDNEGYKHFPVLQAQIKSSQDERDNHADAPIRKNSINDLELPVMSFNQSYIRVPLFPDELAQKAG--EDVILLGANLRCCFTGDMWNTQVDNAASSR
                                                                    +E    AG    ++    +LRCCFTGDMWNTQVDNAAS R
Subjt:  FQVLDNEGYKHFPVLQAQIKSSQDERDNHADAPIRKNSINDLELPVMSFNQSYIRVPLFPDELAQKAG--EDVILLGANLRCCFTGDMWNTQVDNAASSR

Query:  RLSGINKSQVLTIKKRFDTNMRELHLFYLKSPKVGEFGLSRLWECLNYNYHYTDTGSRRS
        RLSGINKSQ+L +KKRFD NM+ELHLFYLKSPKVGEFGLSRLWE L+YNYHY+DT +  S
Subjt:  RLSGINKSQVLTIKKRFDTNMRELHLFYLKSPKVGEFGLSRLWECLNYNYHYTDTGSRRS

XP_038891620.1 gamma-tubulin complex component 6 isoform X2 [Benincasa hispida]

1.8e-70

58.46

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Query:  MPDMVLLVRQNRHSKLINQEIQHFNVLVKTRHEVNHFVCVLQHYVESQLSHLSWCRFLQSLQLKYRVVVIAKDMMDLESMHMAYLTDALQTIQKRGLREE
        + DMV+LVRQNRHSKLINQEIQHFNVLVKTRHEVNHFVCVLQHYVESQLSHLSWCRFLQSLQLK      AKDMMDLESMHMAYLTDAL T         
Subjt:  MPDMVLLVRQNRHSKLINQEIQHFNVLVKTRHEVNHFVCVLQHYVESQLSHLSWCRFLQSLQLKYRVVVIAKDMMDLESMHMAYLTDALQTIQKRGLREE

Query:  FQVLDNEGYKHFPVLQAQIKSSQDERDNHADAPIRKNSINDLELPVMSFNQSYIRVPLFPDELAQKAG--EDVILLGANLRCCFTGDMWNTQVDNAASSR
                                                                    +E    AG    ++    +LRCCFTGDMWNTQVDNAAS R
Subjt:  FQVLDNEGYKHFPVLQAQIKSSQDERDNHADAPIRKNSINDLELPVMSFNQSYIRVPLFPDELAQKAG--EDVILLGANLRCCFTGDMWNTQVDNAASSR

Query:  RLSGINKSQVLTIKKRFDTNMRELHLFYLKSPKVGEFGLSRLWECLNYNYHYTDTGSRRS
        RLSGINKSQ+L +KKRFD NM+ELHLFYLKSPKVGEFGLSRLWE L+YNYHY+DT +  S
Subjt:  RLSGINKSQVLTIKKRFDTNMRELHLFYLKSPKVGEFGLSRLWECLNYNYHYTDTGSRRS

TrEMBL top hits

e value

%identity

Alignment

A0A1S3C4N8 uncharacterized protein LOC103496848

1.3e-66

57.69

Show/hide

Query:  MPDMVLLVRQNRHSKLINQEIQHFNVLVKTRHEVNHFVCVLQHYVESQLSHLSWCRFLQSLQLKYRVVVIAKDMMDLESMHMAYLTDALQTIQKRGLREE
        + DMVLLVR+NRHSKLINQEI+HFN+LVKTRHEVNHFVCVLQHYVESQL+HLS CRFLQSLQLK      AKDMMDLESMHMAYLTDAL T     L EE
Subjt:  MPDMVLLVRQNRHSKLINQEIQHFNVLVKTRHEVNHFVCVLQHYVESQLSHLSWCRFLQSLQLKYRVVVIAKDMMDLESMHMAYLTDALQTIQKRGLREE

Query:  FQVLDNEGYKHFPVLQAQIKSSQDERDNHADAPIRKNSINDLELPVMSFNQSYIRVPLFPDELAQKAGEDVILLGANLRCCFTGDMWNTQVDNAASSRRL
         Q                                              F  S I                ++    +LRCCFT DMWNTQVD+AASSRRL
Subjt:  FQVLDNEGYKHFPVLQAQIKSSQDERDNHADAPIRKNSINDLELPVMSFNQSYIRVPLFPDELAQKAGEDVILLGANLRCCFTGDMWNTQVDNAASSRRL

Query:  SGINKSQVLTIKKRFDTNMRELHLFYLKSPKVGEFGLSRLWECLNYNYHYTDTGSRRSSF
        S INK+QVL IKKRFD NM+ELHL +LKSPKVG+FGLSRLWECLNYNYHY++TG+  S +
Subjt:  SGINKSQVLTIKKRFDTNMRELHLFYLKSPKVGEFGLSRLWECLNYNYHYTDTGSRRSSF

A0A5A7V4S0 Gamma-tubulin complex component 6 isoform X2

1.3e-66

57.69

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Query:  MPDMVLLVRQNRHSKLINQEIQHFNVLVKTRHEVNHFVCVLQHYVESQLSHLSWCRFLQSLQLKYRVVVIAKDMMDLESMHMAYLTDALQTIQKRGLREE
        + DMVLLVR+NRHSKLINQEI+HFN+LVKTRHEVNHFVCVLQHYVESQL+HLS CRFLQSLQLK      AKDMMDLESMHMAYLTDAL T     L EE
Subjt:  MPDMVLLVRQNRHSKLINQEIQHFNVLVKTRHEVNHFVCVLQHYVESQLSHLSWCRFLQSLQLKYRVVVIAKDMMDLESMHMAYLTDALQTIQKRGLREE

Query:  FQVLDNEGYKHFPVLQAQIKSSQDERDNHADAPIRKNSINDLELPVMSFNQSYIRVPLFPDELAQKAGEDVILLGANLRCCFTGDMWNTQVDNAASSRRL
         Q                                              F  S I                ++    +LRCCFT DMWNTQVD+AASSRRL
Subjt:  FQVLDNEGYKHFPVLQAQIKSSQDERDNHADAPIRKNSINDLELPVMSFNQSYIRVPLFPDELAQKAGEDVILLGANLRCCFTGDMWNTQVDNAASSRRL

Query:  SGINKSQVLTIKKRFDTNMRELHLFYLKSPKVGEFGLSRLWECLNYNYHYTDTGSRRSSF
        S INK+QVL IKKRFD NM+ELHL +LKSPKVG+FGLSRLWECLNYNYHY++TG+  S +
Subjt:  SGINKSQVLTIKKRFDTNMRELHLFYLKSPKVGEFGLSRLWECLNYNYHYTDTGSRRSSF

A0A6J1DJV5 uncharacterized protein LOC111021210 isoform X2

1.2e-56

50.38

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Query:  MPDMVLLVRQNRHSKLINQEIQHFNVLVKTRHEVNHFVCVLQHYVESQLSHLSWCRFLQSLQLKYRVVVIAKDMMDLESMHMAYLTDALQTIQKRGLREE
        + DMVL V QNRHSK+INQE +H NVLVKTRHEVNHFVCVLQ+YVESQLSH+SWCRFLQSLQLK      AKDMMDLESMHM YLTDAL T         
Subjt:  MPDMVLLVRQNRHSKLINQEIQHFNVLVKTRHEVNHFVCVLQHYVESQLSHLSWCRFLQSLQLKYRVVVIAKDMMDLESMHMAYLTDALQTIQKRGLREE

Query:  FQVLDNEGYKHFPVLQAQIKSSQDERDNHADAPIRKNSINDLELPVMSFNQSYIRVPLFPDELAQKAG--EDVILLGANLRCCFTGDMWNTQVDNAASSR
                                                                    ++    AG    ++    +LRCCFTGD WN QVD AA SR
Subjt:  FQVLDNEGYKHFPVLQAQIKSSQDERDNHADAPIRKNSINDLELPVMSFNQSYIRVPLFPDELAQKAG--EDVILLGANLRCCFTGDMWNTQVDNAASSR

Query:  RLSGINKSQVLTIKKRFDTNMRELHLFYLKSPKVGEFGLSRLWECLNYNYHYTDTGSRRS
        RLS INKSQVL +KKRF+ +M+EL L YLKSPK+G+FG+SR WE LNYN HY + G+  S
Subjt:  RLSGINKSQVLTIKKRFDTNMRELHLFYLKSPKVGEFGLSRLWECLNYNYHYTDTGSRRS

A0A6J1H3E0 uncharacterized protein LOC111459753 isoform X1

1.5e-64

54.2

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Query:  MPDMVLLVRQNRHSKLINQEIQHFNVLVKTRHEVNHFVCVLQHYVESQLSHLSWCRFLQSLQLKYRVVVIAKDMMDLESMHMAYLTDALQTIQKRGLREE
        + DM +L+ QNRHSK INQEIQHFNVLVKTRHEV+HFVCVLQHYVESQLSHLSWCRFLQSLQLK      AKDMMDLESMHMAYLTDA  T         
Subjt:  MPDMVLLVRQNRHSKLINQEIQHFNVLVKTRHEVNHFVCVLQHYVESQLSHLSWCRFLQSLQLKYRVVVIAKDMMDLESMHMAYLTDALQTIQKRGLREE

Query:  FQVLDNEGYKHFPVLQAQIKSSQDERDNHADAPIRKNSINDLELPVMSFNQSYIRVPLFPDELAQKAG--EDVILLGANLRCCFTGDMWNTQVDNAASSR
                                                                    +E    AG    ++    +LRCCFTGDMWNTQVDNAASSR
Subjt:  FQVLDNEGYKHFPVLQAQIKSSQDERDNHADAPIRKNSINDLELPVMSFNQSYIRVPLFPDELAQKAG--EDVILLGANLRCCFTGDMWNTQVDNAASSR

Query:  RLSGINKSQVLTIKKRFDTNMRELHLFYLKSPKVGEFGLSRLWECLNYNYHYTDTGSRRSSF
        RLS INKSQVL +K+RFD NM+ELHL YLKSPK+GE+GLSRLWE  NYN HY+DTG+  + +
Subjt:  RLSGINKSQVLTIKKRFDTNMRELHLFYLKSPKVGEFGLSRLWECLNYNYHYTDTGSRRSSF

A0A6J1K7L9 uncharacterized protein LOC111490907 isoform X1

3.8e-63

53.44

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Query:  MPDMVLLVRQNRHSKLINQEIQHFNVLVKTRHEVNHFVCVLQHYVESQLSHLSWCRFLQSLQLKYRVVVIAKDMMDLESMHMAYLTDALQTIQKRGLREE
        + DM +L+ QNRHSK INQEIQHFNVLVKTRHEV+HFVCVLQHYVESQLSHLSWCRFLQSLQLK      AKDMMDLESMHMAYLTDA  T         
Subjt:  MPDMVLLVRQNRHSKLINQEIQHFNVLVKTRHEVNHFVCVLQHYVESQLSHLSWCRFLQSLQLKYRVVVIAKDMMDLESMHMAYLTDALQTIQKRGLREE

Query:  FQVLDNEGYKHFPVLQAQIKSSQDERDNHADAPIRKNSINDLELPVMSFNQSYIRVPLFPDELAQKAG--EDVILLGANLRCCFTGDMWNTQVDNAASSR
                                                                    +E    AG    ++    +LRCCFTGDMWNTQVDNAASSR
Subjt:  FQVLDNEGYKHFPVLQAQIKSSQDERDNHADAPIRKNSINDLELPVMSFNQSYIRVPLFPDELAQKAG--EDVILLGANLRCCFTGDMWNTQVDNAASSR

Query:  RLSGINKSQVLTIKKRFDTNMRELHLFYLKSPKVGEFGLSRLWECLNYNYHYTDTGSRRSSF
        RLS INKS VL +KK+FD NM+ELHL Y KSPK+GE+GLS+LWE LNYN HY+DTG+  + +
Subjt:  RLSGINKSQVLTIKKRFDTNMRELHLFYLKSPKVGEFGLSRLWECLNYNYHYTDTGSRRSSF

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G43610.1 Spc97 / Spc98 family of spindle pole body (SBP) component

2.1e-29

33.47

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Query:  RHSKLINQEIQHFNVLVKTRHEVNHFVCVLQHYVESQLSHLSWCRFLQSLQLKYRVVVIAKDMMDLESMHMAYLTDALQTIQKRGLREEFQVLDNEGYKH
        +  K++ QE++  N+L+K RH+VNHFV  LQ YV S+LSH+SW +FL SL+ K       KDMMDLES+HMAYL++AL+      L +E Q++ N     
Subjt:  RHSKLINQEIQHFNVLVKTRHEVNHFVCVLQHYVESQLSHLSWCRFLQSLQLKYRVVVIAKDMMDLESMHMAYLTDALQTIQKRGLREEFQVLDNEGYKH

Query:  FPVLQAQIKSSQDERDNHADAPIRKNSINDLELPVMSFNQSYIRVPLFPDELAQKAGEDVILLGANLRCCFTGDMWNT-QVDNAASSRRLSGINKSQVLT
                                                                 E+++    + R C    + +T +V N + ++ L GIN SQV+ 
Subjt:  FPVLQAQIKSSQDERDNHADAPIRKNSINDLELPVMSFNQSYIRVPLFPDELAQKAGEDVILLGANLRCCFTGDMWNT-QVDNAASSRRLSGINKSQVLT

Query:  IKKRFDTNMRELHLFYLKSPKVGEFGLSRLWECLNYNYHYTD
        +K+ FD  ++ELH  +L+SPK G++GLSR W+ LN+N +Y+D
Subjt:  IKKRFDTNMRELHLFYLKSPKVGEFGLSRLWECLNYNYHYTD

Sequences

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CDS sequence

Show/hide CDS sequence

ATGCCGGACATGGTTCTCTTGGTCCGTCAGAATCGCCATTCCAAACTTATTAATCAGGAAATCCAGCATTTCAATGTTTTGGTGAAGACTAGGCATGAAGTCAACCATTT
TGTGTGTGTGTTACAGCATTATGTGGAATCTCAATTATCACATCTATCATGGTGTAGATTTCTTCAATCTCTTCAACTAAAGTACAGAGTGGTTGTTATAGCAAAAGATA
TGATGGACCTGGAGTCAATGCATATGGCATATCTAACTGATGCACTACAAACGATTCAAAAGAGGGGACTCAGGGAGGAATTCCAAGTTCTAGACAACGAAGGTTACAAA
CATTTCCCAGTATTACAAGCTCAAATTAAGTCTAGTCAGGATGAAAGAGACAACCATGCAGACGCACCAATCAGGAAAAATTCTATCAATGACCTTGAACTTCCTGTGAT
GTCTTTCAACCAAAGCTACATTAGAGTACCTCTCTTTCCAGATGAGCTTGCACAGAAGGCTGGGGAAGATGTAATCTTATTAGGGGCTAATCTCCGATGTTGTTTTACTG
GTGACATGTGGAATACTCAAGTTGATAATGCAGCTTCTTCAAGGAGACTTTCTGGGATCAACAAGTCTCAGGTACTTACCATAAAGAAGAGATTTGACACAAACATGAGG
GAATTGCACCTATTTTATTTGAAGTCACCTAAGGTTGGAGAGTTTGGGCTATCTCGACTTTGGGAATGTCTCAATTACAACTATCACTACACTGACACTGGTTCGAGGCG
GAGTAGTTTCTACGACGCTTGA

mRNA sequence

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Protein sequence

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MPDMVLLVRQNRHSKLINQEIQHFNVLVKTRHEVNHFVCVLQHYVESQLSHLSWCRFLQSLQLKYRVVVIAKDMMDLESMHMAYLTDALQTIQKRGLREEFQVLDNEGYK
HFPVLQAQIKSSQDERDNHADAPIRKNSINDLELPVMSFNQSYIRVPLFPDELAQKAGEDVILLGANLRCCFTGDMWNTQVDNAASSRRLSGINKSQVLTIKKRFDTNMR
ELHLFYLKSPKVGEFGLSRLWECLNYNYHYTDTGSRRSSFYDA

Lsi05G002990 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome