; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi05G003030 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G003030
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionPlastid movement impaired
Genome locationchr05:3878165..3880617
RNA-Seq ExpressionLsi05G003030
SyntenyLsi05G003030
Gene Ontology termsNA
InterPro domainsIPR025322 - Protein of unknown function DUF4228, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060756.1 putative Encodes a protein whose expression is responsive to nematode infection [Cucumis melo var. makuwa]6.0e-6279.62Show/hide
Query:  MKINGETFKITIPTTAYEVTSHHPNHFLYESKSLKQFGLRAKPLNPNYQLKPKTLYFLLQLPTLPGRHRPLRRVCSDLHLSASDRLECLMISRRSVSDLE
        MKINGETFKIT+PTTAYEVTSH+PNH LYESKSL QFGLRAKPL+P+ QL+PKTLYFLLQLPTL G  R LRR CSDLHLSASDRLECL++SRRSVSDL+
Subjt:  MKINGETFKITIPTTAYEVTSHHPNHFLYESKSLKQFGLRAKPLNPNYQLKPKTLYFLLQLPTLPGRHRPLRRVCSDLHLSASDRLECLMISRRSVSDLE

Query:  TLRFDAQRFSTDGGATRPVQVKFRLSRAEFERLMKECKNKVEATERIVDLFAKSRDN
        TLRFD QR S   GA + VQVKF+L RAEFERLMKECKN VE T++IVD  AKSRDN
Subjt:  TLRFDAQRFSTDGGATRPVQVKFRLSRAEFERLMKECKNKVEATERIVDLFAKSRDN

KAE8650631.1 hypothetical protein Csa_011666, partial [Cucumis sativus]1.9e-7176.41Show/hide
Query:  MGNAMGVRGLRRRKR-TKVMKINGETFKITIPTTAYEVTSHHPNHFLYESKSLKQFGLRAKPLNPNYQLKPKTLYFLLQLPTLPGRHRPLRRVCSDLH-L
        MGNA+G RG RR+KR TKVMKINGET KIT+PTTAYEVTSH+P+H LYESKSLK FGLRAKPL+P+  L+PKTLYFLLQLPTLP  H  LRR CSDLH L
Subjt:  MGNAMGVRGLRRRKR-TKVMKINGETFKITIPTTAYEVTSHHPNHFLYESKSLKQFGLRAKPLNPNYQLKPKTLYFLLQLPTLPGRHRPLRRVCSDLH-L

Query:  SASDRLECLMISRRSVSDLETLRFDAQRFSTDGGATRPVQVKFRLSRAEFERLMKECKNKVEATERIVDLFAKSRDNGDGGQEDEFFWKMDDACS
        SASDRLECL++SRRS+SDL+TLRFD QR STD GA +PVQVKF+L RAEFERLMKECKNKVE T+RIVD  A+SRDN  G Q+DE FWKM  A S
Subjt:  SASDRLECLMISRRSVSDLETLRFDAQRFSTDGGATRPVQVKFRLSRAEFERLMKECKNKVEATERIVDLFAKSRDNGDGGQEDEFFWKMDDACS

XP_004151549.1 uncharacterized protein At1g66480 [Cucumis sativus]1.9e-6877.09Show/hide
Query:  MKINGETFKITIPTTAYEVTSHHPNHFLYESKSLKQFGLRAKPLNPNYQLKPKTLYFLLQLPTLPGRHRPLRRVCSDLH-LSASDRLECLMISRRSVSDL
        MKINGET KIT+PTTAYEVTSH+P+H LYESKSLK FGLRAKPL+P+  L+PKTLYFLLQLPTLP  H  LRR CSDLH LSASDRLECL++SRRS+SDL
Subjt:  MKINGETFKITIPTTAYEVTSHHPNHFLYESKSLKQFGLRAKPLNPNYQLKPKTLYFLLQLPTLPGRHRPLRRVCSDLH-LSASDRLECLMISRRSVSDL

Query:  ETLRFDAQRFSTDGGATRPVQVKFRLSRAEFERLMKECKNKVEATERIVDLFAKSRDNGDGGQEDEFFWKMDDACSGKA
        +TLRFD QR STD GA +PVQVKF+L RAEFERLMKECKNKVE T+RIVD  A+SRDN  G Q+DE FWKM  A SGKA
Subjt:  ETLRFDAQRFSTDGGATRPVQVKFRLSRAEFERLMKECKNKVEATERIVDLFAKSRDNGDGGQEDEFFWKMDDACSGKA

XP_008457131.1 PREDICTED: uncharacterized protein At1g66480 [Cucumis melo]6.6e-6178.34Show/hide
Query:  MKINGETFKITIPTTAYEVTSHHPNHFLYESKSLKQFGLRAKPLNPNYQLKPKTLYFLLQLPTLPGRHRPLRRVCSDLHLSASDRLECLMISRRSVSDLE
        MKINGETFKIT+PTTAYEVTSH+PNH LYESKSL QFGLRAKPL+P+ QL+PKTLYFLLQLPTL G  R LRR CSDLHLSASDRLECL++SRRSVSDL+
Subjt:  MKINGETFKITIPTTAYEVTSHHPNHFLYESKSLKQFGLRAKPLNPNYQLKPKTLYFLLQLPTLPGRHRPLRRVCSDLHLSASDRLECLMISRRSVSDLE

Query:  TLRFDAQRFSTDGGATRPVQVKFRLSRAEFERLMKECKNKVEATERIVDLFAKSRDN
        TLRFD QR     GA + VQVKF+L RAEFERLMKECKN VE T++IVD  A+SRDN
Subjt:  TLRFDAQRFSTDGGATRPVQVKFRLSRAEFERLMKECKNKVEATERIVDLFAKSRDN

XP_038887072.1 uncharacterized protein At1g66480-like [Benincasa hispida]1.3e-8582.09Show/hide
Query:  MGNAMGVRG-LRRRKR-TKVMKINGETFKITIPTTAYEVTSHHPNHFLYESKSLKQFGLRAKPLNPNYQLKPKTLYFLLQLPTLPGRHRPLRRVCSDLHL
        MGN+MG+RG +RRRKR TKVMKINGE FKIT+PTTAYEVT HHPNH LYES+SL+QFGLRAKPL+P++QLKPKTLYFLLQLPTL G H PLRRVCSDLHL
Subjt:  MGNAMGVRG-LRRRKR-TKVMKINGETFKITIPTTAYEVTSHHPNHFLYESKSLKQFGLRAKPLNPNYQLKPKTLYFLLQLPTLPGRHRPLRRVCSDLHL

Query:  SASDRLECLMISRRSVSDLETLRFDAQRFSTDGGATRPVQVKFRLSRAEFERLMKECKNKVEATERIVDLFAKSRDNGDGGQEDEFFWKMDDACSGKARE
        SASDRLECL++SRRSVSDL+T+RFD QR STDGGA +PVQVKFRL R EFERLMKECKNKVEATERIVD   +SRDNGDGGQ+DE F KM DACSGKARE
Subjt:  SASDRLECLMISRRSVSDLETLRFDAQRFSTDGGATRPVQVKFRLSRAEFERLMKECKNKVEATERIVDLFAKSRDNGDGGQEDEFFWKMDDACSGKARE

Query:  L
        +
Subjt:  L

TrEMBL top hitse value%identityAlignment
A0A0A0L7W0 Uncharacterized protein1.3e-7376.77Show/hide
Query:  MGNAMGVRGLRRRKR-TKVMKINGETFKITIPTTAYEVTSHHPNHFLYESKSLKQFGLRAKPLNPNYQLKPKTLYFLLQLPTLPGRHRPLRRVCSDLH-L
        MGNA+G RG RR+KR TKVMKINGET KIT+PTTAYEVTSH+P+H LYESKSLK FGLRAKPL+P+  L+PKTLYFLLQLPTLP  H  LRR CSDLH L
Subjt:  MGNAMGVRGLRRRKR-TKVMKINGETFKITIPTTAYEVTSHHPNHFLYESKSLKQFGLRAKPLNPNYQLKPKTLYFLLQLPTLPGRHRPLRRVCSDLH-L

Query:  SASDRLECLMISRRSVSDLETLRFDAQRFSTDGGATRPVQVKFRLSRAEFERLMKECKNKVEATERIVDLFAKSRDNGDGGQEDEFFWKMDDACSGKA
        SASDRLECL++SRRS+SDL+TLRFD QR STD GA +PVQVKF+L RAEFERLMKECKNKVE T+RIVD  A+SRDN  G Q+DE FWKM  A SGKA
Subjt:  SASDRLECLMISRRSVSDLETLRFDAQRFSTDGGATRPVQVKFRLSRAEFERLMKECKNKVEATERIVDLFAKSRDNGDGGQEDEFFWKMDDACSGKA

A0A1S3C4W5 uncharacterized protein At1g664803.2e-6178.34Show/hide
Query:  MKINGETFKITIPTTAYEVTSHHPNHFLYESKSLKQFGLRAKPLNPNYQLKPKTLYFLLQLPTLPGRHRPLRRVCSDLHLSASDRLECLMISRRSVSDLE
        MKINGETFKIT+PTTAYEVTSH+PNH LYESKSL QFGLRAKPL+P+ QL+PKTLYFLLQLPTL G  R LRR CSDLHLSASDRLECL++SRRSVSDL+
Subjt:  MKINGETFKITIPTTAYEVTSHHPNHFLYESKSLKQFGLRAKPLNPNYQLKPKTLYFLLQLPTLPGRHRPLRRVCSDLHLSASDRLECLMISRRSVSDLE

Query:  TLRFDAQRFSTDGGATRPVQVKFRLSRAEFERLMKECKNKVEATERIVDLFAKSRDN
        TLRFD QR     GA + VQVKF+L RAEFERLMKECKN VE T++IVD  A+SRDN
Subjt:  TLRFDAQRFSTDGGATRPVQVKFRLSRAEFERLMKECKNKVEATERIVDLFAKSRDN

A0A5A7V2M4 Putative Encodes a protein whose expression is responsive to nematode infection2.9e-6279.62Show/hide
Query:  MKINGETFKITIPTTAYEVTSHHPNHFLYESKSLKQFGLRAKPLNPNYQLKPKTLYFLLQLPTLPGRHRPLRRVCSDLHLSASDRLECLMISRRSVSDLE
        MKINGETFKIT+PTTAYEVTSH+PNH LYESKSL QFGLRAKPL+P+ QL+PKTLYFLLQLPTL G  R LRR CSDLHLSASDRLECL++SRRSVSDL+
Subjt:  MKINGETFKITIPTTAYEVTSHHPNHFLYESKSLKQFGLRAKPLNPNYQLKPKTLYFLLQLPTLPGRHRPLRRVCSDLHLSASDRLECLMISRRSVSDLE

Query:  TLRFDAQRFSTDGGATRPVQVKFRLSRAEFERLMKECKNKVEATERIVDLFAKSRDN
        TLRFD QR S   GA + VQVKF+L RAEFERLMKECKN VE T++IVD  AKSRDN
Subjt:  TLRFDAQRFSTDGGATRPVQVKFRLSRAEFERLMKECKNKVEATERIVDLFAKSRDN

A0A6J1G9F9 uncharacterized protein At1g66480-like1.6e-5764.82Show/hide
Query:  MGNAMGVRGLRRRKRT-KVMKINGETFKITIPTTAYEVTSHHPNHFLYESKSLKQFGLRAKPLNPNYQLKPKTLYFLLQLPTLPGRHRPLRRVCSDLHLS
        MGNAMG  G RR KRT KVMKINGETFKI  PTTA++VT+HHPNH LY+S+S+ Q GLRAKPL+P++QLKPKTLYFLL LP LPG HRPL RV SDL  S
Subjt:  MGNAMGVRGLRRRKRT-KVMKINGETFKITIPTTAYEVTSHHPNHFLYESKSLKQFGLRAKPLNPNYQLKPKTLYFLLQLPTLPGRHRPLRRVCSDLHLS

Query:  ASDRLECLMISRRSVSDLETLRFDAQRFSTDGGATRPVQVKFRLSRAEFERLMKECKNKVEATERIVDLFAKSRDNGDGGQEDEFFWKMDDACSGKARE
        ASDRLECLM+SRRSVSDL++ R D    ST    T PVQ+K R+ R EFERLMKE K+KVEA ERIVDL                 WK    CSG+ARE
Subjt:  ASDRLECLMISRRSVSDLETLRFDAQRFSTDGGATRPVQVKFRLSRAEFERLMKECKNKVEATERIVDLFAKSRDNGDGGQEDEFFWKMDDACSGKARE

A0A6J1K9N3 uncharacterized protein At1g66480-like1.9e-5864.82Show/hide
Query:  MGNAMGVRGLRRRKRT-KVMKINGETFKITIPTTAYEVTSHHPNHFLYESKSLKQFGLRAKPLNPNYQLKPKTLYFLLQLPTLPGRHRPLRRVCSDLHLS
        MGNAMG RG RR KRT KVMKINGETFKI  PTTA++VT+HHPNH LY+S+S+ Q GLRAKPL+P++QLKPKTLYFLL LP LPG HRPL RV SDL  S
Subjt:  MGNAMGVRGLRRRKRT-KVMKINGETFKITIPTTAYEVTSHHPNHFLYESKSLKQFGLRAKPLNPNYQLKPKTLYFLLQLPTLPGRHRPLRRVCSDLHLS

Query:  ASDRLECLMISRRSVSDLETLRFDAQRFSTDGGATRPVQVKFRLSRAEFERLMKECKNKVEATERIVDLFAKSRDNGDGGQEDEFFWKMDDACSGKARE
        ASDRLECLM+SRRS+SDL++ R D    ST    T PVQ+K R+ R EFERLMKE K+KVEA ERIVDL                 WK    CSG+ARE
Subjt:  ASDRLECLMISRRSVSDLETLRFDAQRFSTDGGATRPVQVKFRLSRAEFERLMKECKNKVEATERIVDLFAKSRDNGDGGQEDEFFWKMDDACSGKARE

SwissProt top hitse value%identityAlignment
Q6NLC8 Uncharacterized protein At1g664806.9e-2942.11Show/hide
Query:  MGNAMGVRGLRRRKRTKVMKINGETFKITIPTTAYEVTSHHPNHFLYESKSLKQFGLRAKPLNPNYQLKPKTLYFLLQLPTLP--------GRHRPLRRV
        MGN++ V    +RKR KVMKI+GETF+I  P TA EVT+ +P + L +S+++K FG+R+KPL PN  LKPK  YFL++LP LP            P RRV
Subjt:  MGNAMGVRGLRRRKRTKVMKINGETFKITIPTTAYEVTSHHPNHFLYESKSLKQFGLRAKPLNPNYQLKPKTLYFLLQLPTLP--------GRHRPLRRV

Query:  CSDLHLSASDRLECLMISRRSVSDLETLRFD-AQRFSTDGGATRPVQVKFRLSRAEFERLMKECKNKVEA-TERIVDLFAKSRDNGDGGQ
         S +H+ A +RL+ LM+SRR+VSD+   R D    F  + G      V+ RL R++  +LM+E  N   A  E+I+ ++ +      GG+
Subjt:  CSDLHLSASDRLECLMISRRSVSDLETLRFD-AQRFSTDGGATRPVQVKFRLSRAEFERLMKECKNKVEA-TERIVDLFAKSRDNGDGGQ

Arabidopsis top hitse value%identityAlignment
AT1G66480.1 plastid movement impaired 24.9e-3042.11Show/hide
Query:  MGNAMGVRGLRRRKRTKVMKINGETFKITIPTTAYEVTSHHPNHFLYESKSLKQFGLRAKPLNPNYQLKPKTLYFLLQLPTLP--------GRHRPLRRV
        MGN++ V    +RKR KVMKI+GETF+I  P TA EVT+ +P + L +S+++K FG+R+KPL PN  LKPK  YFL++LP LP            P RRV
Subjt:  MGNAMGVRGLRRRKRTKVMKINGETFKITIPTTAYEVTSHHPNHFLYESKSLKQFGLRAKPLNPNYQLKPKTLYFLLQLPTLP--------GRHRPLRRV

Query:  CSDLHLSASDRLECLMISRRSVSDLETLRFD-AQRFSTDGGATRPVQVKFRLSRAEFERLMKECKNKVEA-TERIVDLFAKSRDNGDGGQ
         S +H+ A +RL+ LM+SRR+VSD+   R D    F  + G      V+ RL R++  +LM+E  N   A  E+I+ ++ +      GG+
Subjt:  CSDLHLSASDRLECLMISRRSVSDLETLRFD-AQRFSTDGGATRPVQVKFRLSRAEFERLMKECKNKVEA-TERIVDLFAKSRDNGDGGQ

AT1G71015.1 unknown protein3.8e-2236.31Show/hide
Query:  MGNAMGVRGLRRRKRTKVMKINGETFKITIPTTAYEVTSHHPNHFLYESKSLKQFGLRAKPLNPNYQLKPKTLYFLLQLPTLPGRHRPLRRVCSDLHLSA
        MGN++G      +K   +M INGE+FK+  P  A  V    P H L ES+++K+ G+RAKPL P+  L+ K +YF+++LP    + R  RRV S + +SA
Subjt:  MGNAMGVRGLRRRKRTKVMKINGETFKITIPTTAYEVTSHHPNHFLYESKSLKQFGLRAKPLNPNYQLKPKTLYFLLQLPTLPGRHRPLRRVCSDLHLSA

Query:  SDRLECLMISRRSVSDLETLRFDAQRFSTDGGATRPVQVKFRLSRAEFERLMKECKNKVEATERIVDL
         +RLE L +SRRS SDL  ++   ++   +        VK +L + + E+L KE ++  + + +I  L
Subjt:  SDRLECLMISRRSVSDLETLRFDAQRFSTDGGATRPVQVKFRLSRAEFERLMKECKNKVEATERIVDL

AT2G01340.1 Encodes a protein whose expression is responsive to nematode infection.5.4e-2945.71Show/hide
Query:  MGNAMGVRGLRRRKRTKVMKINGETFKITIPTTAYEVTSHHPNHFLYESKSLKQFGLRAKPLNPNYQLKPKTLYFLLQLPTLPGRHRPLRRVCSDLHLSA
        MGN++G      +K TKVMKI+GETFK+  P TA EV    P H L +S+S+K +G RAKPL    +L+ K LYF+++    P +  P RRV S +H+SA
Subjt:  MGNAMGVRGLRRRKRTKVMKINGETFKITIPTTAYEVTSHHPNHFLYESKSLKQFGLRAKPLNPNYQLKPKTLYFLLQLPTLPGRHRPLRRVCSDLHLSA

Query:  SDRLECLMISRRSVSDLETLR-FDAQRFSTDGGATRPVQVKFRLSRAEFERLMKECKNKVEATERIVDLF-AKSR
         +RLE LM++RRS SDL  L+         + GA R  +VK R+ +AE E+L+KE   + EAT++I  LF AK R
Subjt:  SDRLECLMISRRSVSDLETLR-FDAQRFSTDGGATRPVQVKFRLSRAEFERLMKECKNKVEATERIVDLF-AKSR

AT5G37840.1 BEST Arabidopsis thaliana protein match is: plastid movement impaired 2 (TAIR:AT1G66480.1)4.6e-2839.46Show/hide
Query:  MGNAMGVRGLRRRKRTKVMKINGETFKITIPTTAYEVTSHHPNHFLYESKSLKQFGLRAKPLNPNYQLKPKTLYFLLQLPTLPGRHR-PLRRVCS-DLHL
        MGN + V    RR + KVMKI+G+ F++  P TA + T  +P   L +S+++K+ G+RAKPL PN  LKP   YFL+ LP +  R++ P RRV S ++H+
Subjt:  MGNAMGVRGLRRRKRTKVMKINGETFKITIPTTAYEVTSHHPNHFLYESKSLKQFGLRAKPLNPNYQLKPKTLYFLLQLPTLPGRHR-PLRRVCS-DLHL

Query:  SASDRLECLMISRRSVSDLETLRFDAQRFSTDGGATRPVQVKFRLSRAEFERLMKECKNKVEATERIVDLFAKSRDNGDGGQEDE
         A +RLE LM+SRR+VSD+   R D      + G TR   V+ RL R++  +LM+E  +  E   +I+  + +S     GG++++
Subjt:  SASDRLECLMISRRSVSDLETLRFDAQRFSTDGGATRPVQVKFRLSRAEFERLMKECKNKVEATERIVDLFAKSRDNGDGGQEDE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATAGATTGAGATACAAAAGAGAGAAAGAAAGAAAGATGGGAAATGCAATGGGAGTTAGAGGATTAAGAAGAAGAAAAAGAACAAAAGTGATGAAAATCAATGGAGA
AACCTTCAAAATAACAATTCCAACCACAGCCTACGAAGTCACAAGCCATCATCCAAATCACTTTCTCTATGAATCCAAATCCCTCAAGCAATTTGGCCTCCGAGCCAAGC
CTTTGAACCCTAACTACCAACTCAAACCTAAAACCCTATACTTCCTCCTTCAATTGCCGACCCTCCCCGGCCGCCACCGTCCGCTTCGTCGCGTTTGTTCCGACCTTCAT
TTGTCTGCCTCCGATCGCCTTGAGTGCCTCATGATCTCTCGTCGATCGGTTTCCGACCTCGAAACCCTTCGGTTCGATGCTCAGAGGTTCTCAACCGACGGTGGTGCCAC
TAGGCCGGTGCAGGTCAAATTTCGACTGTCGAGGGCGGAATTCGAGAGATTGATGAAGGAATGTAAGAACAAGGTGGAGGCAACGGAGAGAATTGTTGATCTTTTTGCAA
AAAGTAGAGATAATGGCGATGGCGGCCAAGAGGATGAGTTCTTTTGGAAGATGGATGATGCTTGTAGTGGTAAAGCGCGCGAGCTAGAAGGAAAAGTTTGGTTTAGTGGA
GTGGAGTTAACTCCTTATGTGCTTAAACTCACCGTGAACTCCACTCAATAA
mRNA sequenceShow/hide mRNA sequence
ATGAATAGATTGAGATACAAAAGAGAGAAAGAAAGAAAGATGGGAAATGCAATGGGAGTTAGAGGATTAAGAAGAAGAAAAAGAACAAAAGTGATGAAAATCAATGGAGA
AACCTTCAAAATAACAATTCCAACCACAGCCTACGAAGTCACAAGCCATCATCCAAATCACTTTCTCTATGAATCCAAATCCCTCAAGCAATTTGGCCTCCGAGCCAAGC
CTTTGAACCCTAACTACCAACTCAAACCTAAAACCCTATACTTCCTCCTTCAATTGCCGACCCTCCCCGGCCGCCACCGTCCGCTTCGTCGCGTTTGTTCCGACCTTCAT
TTGTCTGCCTCCGATCGCCTTGAGTGCCTCATGATCTCTCGTCGATCGGTTTCCGACCTCGAAACCCTTCGGTTCGATGCTCAGAGGTTCTCAACCGACGGTGGTGCCAC
TAGGCCGGTGCAGGTCAAATTTCGACTGTCGAGGGCGGAATTCGAGAGATTGATGAAGGAATGTAAGAACAAGGTGGAGGCAACGGAGAGAATTGTTGATCTTTTTGCAA
AAAGTAGAGATAATGGCGATGGCGGCCAAGAGGATGAGTTCTTTTGGAAGATGGATGATGCTTGTAGTGGTAAAGCGCGCGAGCTAGAAGGAAAAGTTTGGTTTAGTGGA
GTGGAGTTAACTCCTTATGTGCTTAAACTCACCGTGAACTCCACTCAATAA
Protein sequenceShow/hide protein sequence
MNRLRYKREKERKMGNAMGVRGLRRRKRTKVMKINGETFKITIPTTAYEVTSHHPNHFLYESKSLKQFGLRAKPLNPNYQLKPKTLYFLLQLPTLPGRHRPLRRVCSDLH
LSASDRLECLMISRRSVSDLETLRFDAQRFSTDGGATRPVQVKFRLSRAEFERLMKECKNKVEATERIVDLFAKSRDNGDGGQEDEFFWKMDDACSGKARELEGKVWFSG
VELTPYVLKLTVNSTQ