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Lsi05G003050 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G003050
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionleucine-rich repeat extensin-like protein 3
Genome locationchr05:3904859..3905302
RNA-Seq ExpressionLsi05G003050
SyntenyLsi05G003050
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060761.1 formin-like protein 3 [Cucumis melo var. makuwa]1.9e-5877.55Show/hide
Query:  MAPSAAILLSLPFFFLLIFFAHAQTSSPISVDPQNSDAEIKCGSCPCSNPCVQQLPPPPPPPPTPPPCTPTLLTRPPPPRFIYTSSSPLPPPPRFIYTTG
        M  SAAILLS  F  LL+  AH+QTSSPIS+DPQN DAEIKCGSCPCSNPC+QQL PPPPPPP P PCTPT+ +RPPPPRFIYT SSP PPPPRF YTTG
Subjt:  MAPSAAILLSLPFFFLLIFFAHAQTSSPISVDPQNSDAEIKCGSCPCSNPCVQQLPPPPPPPPTPPPCTPTLLTRPPPPRFIYTSSSPLPPPPRFIYTTG

Query:  IPGNMYQVDANNRWYYFSGTRRKRPAMAVVVVALGCGALHLMGFGKW
        +PGN+Y++DANN WYYFSGT   RP MA VVVALGCGALHLMGF KW
Subjt:  IPGNMYQVDANNRWYYFSGTRRKRPAMAVVVVALGCGALHLMGFGKW

KAE8650628.1 hypothetical protein Csa_011452 [Cucumis sativus]2.0e-5576.19Show/hide
Query:  MAPSAAILLSLPFFFLLIFFAHAQTSSPISVDPQNSDAEIKCGSCPCSNPCVQQL---PPPPPPPPTPPPCTPTLLTRPPPPRFIYTSSSPLPPPPRFIY
        MAP AAILLS  F   L+  A++QTSSPI VDPQN DAEIKCGSCPCSNPC+QQL   PPPPPPPP P PCTPT+ +RPPPPRFIYT+SSP PPPPRF Y
Subjt:  MAPSAAILLSLPFFFLLIFFAHAQTSSPISVDPQNSDAEIKCGSCPCSNPCVQQL---PPPPPPPPTPPPCTPTLLTRPPPPRFIYTSSSPLPPPPRFIY

Query:  TTGIPGNMYQVDANNRWYYFSGTRRKRPAMAVVVVALGCGALHLMGF
        TTG+PGN+Y++DANN WYYFSGTRR RP MA V VA+GCGALHLMGF
Subjt:  TTGIPGNMYQVDANNRWYYFSGTRRKRPAMAVVVVALGCGALHLMGF

KAG6581215.1 hypothetical protein SDJN03_21217, partial [Cucurbita argyrosperma subsp. sororia]1.8e-4872.79Show/hide
Query:  MAPSAAILLSLPFFFLLIFFAHAQTSSPISVDPQNSDAEIKCGSCPCSNPCVQQLPPPPPPPPTPPPCTPTLLTRPPPPRFIYTSSSPLPPPPRFIYTTG
        MAPSAAI LSL F FL +  A +Q  SP  VD Q+ ++EIKCGSCPCSNPCV+Q PPPPPPPP PP C P L   PPPPRFIYTS SP PPPPRFIYTTG
Subjt:  MAPSAAILLSLPFFFLLIFFAHAQTSSPISVDPQNSDAEIKCGSCPCSNPCVQQLPPPPPPPPTPPPCTPTLLTRPPPPRFIYTSSSPLPPPPRFIYTTG

Query:  IPGNMYQVDANNRWYYFSGTRRKRPAMAVVVVALGCGALHLMGFGKW
        +PGN+YQ+DANNRWYYFSGT R +PA A +VVALGCGAL+LM FGKW
Subjt:  IPGNMYQVDANNRWYYFSGTRRKRPAMAVVVVALGCGALHLMGFGKW

XP_011651408.1 leucine-rich repeat extensin-like protein 3 [Cucumis sativus]2.1e-5776Show/hide
Query:  MAPSAAILLSLPFFFLLIFFAHAQTSSPISVDPQNSDAEIKCGSCPCSNPCVQQL---PPPPPPPPTPPPCTPTLLTRPPPPRFIYTSSSPLPPPPRFIY
        MAP AAILLS  F   L+  A++QTSSPI VDPQN DAEIKCGSCPCSNPC+QQL   PPPPPPPP P PCTPT+ +RPPPPRFIYT+SSP PPPPRF Y
Subjt:  MAPSAAILLSLPFFFLLIFFAHAQTSSPISVDPQNSDAEIKCGSCPCSNPCVQQL---PPPPPPPPTPPPCTPTLLTRPPPPRFIYTSSSPLPPPPRFIY

Query:  TTGIPGNMYQVDANNRWYYFSGTRRKRPAMAVVVVALGCGALHLMGFGKW
        TTG+PGN+Y++DANN WYYFSGTRR RP MA V VA+GCGALHLMGF KW
Subjt:  TTGIPGNMYQVDANNRWYYFSGTRRKRPAMAVVVVALGCGALHLMGFGKW

XP_023528316.1 leucine-rich repeat extensin-like protein 3 [Cucurbita pepo subsp. pepo]3.3e-5074.15Show/hide
Query:  MAPSAAILLSLPFFFLLIFFAHAQTSSPISVDPQNSDAEIKCGSCPCSNPCVQQLPPPPPPPPTPPPCTPTLLTRPPPPRFIYTSSSPLPPPPRFIYTTG
        MAPSAAI LSL F FL +  A +Q  SP  VDPQ+ ++EIKCGSCPCSNPCV+Q PPPPPPPP PP C P L   PPPPRFIYT+ SP PPPPRFIYTTG
Subjt:  MAPSAAILLSLPFFFLLIFFAHAQTSSPISVDPQNSDAEIKCGSCPCSNPCVQQLPPPPPPPPTPPPCTPTLLTRPPPPRFIYTSSSPLPPPPRFIYTTG

Query:  IPGNMYQVDANNRWYYFSGTRRKRPAMAVVVVALGCGALHLMGFGKW
        +PGN+YQ+DANNRWYYFSGT R RPA AV+VVALGCGAL+LM FGKW
Subjt:  IPGNMYQVDANNRWYYFSGTRRKRPAMAVVVVALGCGALHLMGFGKW

TrEMBL top hitse value%identityAlignment
A0A0A0L7R0 Uncharacterized protein1.0e-5776Show/hide
Query:  MAPSAAILLSLPFFFLLIFFAHAQTSSPISVDPQNSDAEIKCGSCPCSNPCVQQL---PPPPPPPPTPPPCTPTLLTRPPPPRFIYTSSSPLPPPPRFIY
        MAP AAILLS  F   L+  A++QTSSPI VDPQN DAEIKCGSCPCSNPC+QQL   PPPPPPPP P PCTPT+ +RPPPPRFIYT+SSP PPPPRF Y
Subjt:  MAPSAAILLSLPFFFLLIFFAHAQTSSPISVDPQNSDAEIKCGSCPCSNPCVQQL---PPPPPPPPTPPPCTPTLLTRPPPPRFIYTSSSPLPPPPRFIY

Query:  TTGIPGNMYQVDANNRWYYFSGTRRKRPAMAVVVVALGCGALHLMGFGKW
        TTG+PGN+Y++DANN WYYFSGTRR RP MA V VA+GCGALHLMGF KW
Subjt:  TTGIPGNMYQVDANNRWYYFSGTRRKRPAMAVVVVALGCGALHLMGFGKW

A0A2C9WJS4 Uncharacterized protein2.5e-1946.15Show/hide
Query:  AILLSLPFFFLLIFFAHAQTSSPISVD------PQNSDAEIKCGSCPCSNPCVQQLPPPPPPPPTPPPCTPTLLTRPPPPRFIYTSSSPLPPPPRFIYTT
        ++L++LPFFF+L     A  +    +D      PQ  D  IKCGSCPC NPC   LPPPPPPPP PPP T      PPPP          PPPPR IY T
Subjt:  AILLSLPFFFLLIFFAHAQTSSPISVD------PQNSDAEIKCGSCPCSNPCVQQLPPPPPPPPTPPPCTPTLLTRPPPPRFIYTSSSPLPPPPRFIYTT

Query:  GIPGNMYQVDANNRWYYFSGTRRKRPAMAVVVVALGCGALHLM
         +PGN+Y VD  + W Y+ G R+    +  +++  GCGALHLM
Subjt:  GIPGNMYQVDANNRWYYFSGTRRKRPAMAVVVVALGCGALHLM

A0A5A7V4T2 Formin-like protein 39.3e-5977.55Show/hide
Query:  MAPSAAILLSLPFFFLLIFFAHAQTSSPISVDPQNSDAEIKCGSCPCSNPCVQQLPPPPPPPPTPPPCTPTLLTRPPPPRFIYTSSSPLPPPPRFIYTTG
        M  SAAILLS  F  LL+  AH+QTSSPIS+DPQN DAEIKCGSCPCSNPC+QQL PPPPPPP P PCTPT+ +RPPPPRFIYT SSP PPPPRF YTTG
Subjt:  MAPSAAILLSLPFFFLLIFFAHAQTSSPISVDPQNSDAEIKCGSCPCSNPCVQQLPPPPPPPPTPPPCTPTLLTRPPPPRFIYTSSSPLPPPPRFIYTTG

Query:  IPGNMYQVDANNRWYYFSGTRRKRPAMAVVVVALGCGALHLMGFGKW
        +PGN+Y++DANN WYYFSGT   RP MA VVVALGCGALHLMGF KW
Subjt:  IPGNMYQVDANNRWYYFSGTRRKRPAMAVVVVALGCGALHLMGFGKW

A0A6J1GAW3 leucine-rich repeat extensin-like protein 21.4e-2757.05Show/hide
Query:  MAPSAAILLSLPFFFLLIFFAHAQTSSPISVDPQNSDAEIKCGSCP-CSNPCVQQLPPPPPPPPTPPPCTPTLLTRPPPPRFIYTSSSPLPPPPRFIYTT
        MAPSAAI LSL   F+       QTS PIS  P + D EI C S   CSNP VQQL P PP PP P           PPPRF YT+ S  PPP RFIYTT
Subjt:  MAPSAAILLSLPFFFLLIFFAHAQTSSPISVDPQNSDAEIKCGSCP-CSNPCVQQLPPPPPPPPTPPPCTPTLLTRPPPPRFIYTSSSPLPPPPRFIYTT

Query:  GIPGNMYQVDANNRWYYFSGTRRKRPAM-AVVVVALGCGALHLMGFGKW
        G+P ++YQ D  NRWYYFSG   K PAM A+VVV L CGAL L+ FGKW
Subjt:  GIPGNMYQVDANNRWYYFSGTRRKRPAM-AVVVVALGCGALHLMGFGKW

A0A6J1J7W0 probable pathogenesis-related protein ARB_028613.3e-4872.11Show/hide
Query:  MAPSAAILLSLPFFFLLIFFAHAQTSSPISVDPQNSDAEIKCGSCPCSNPCVQQLPPPPPPPPTPPPCTPTLLTRPPPPRFIYTSSSPLPPPPRFIYTTG
        MAPSAAI LSL F FL +  A++Q  SP  VDPQ+ ++EIKCGSCPCSNPCV+Q PPPPPPP  PP C P L   PPPPRFIYTS SP PPPPRFIYTTG
Subjt:  MAPSAAILLSLPFFFLLIFFAHAQTSSPISVDPQNSDAEIKCGSCPCSNPCVQQLPPPPPPPPTPPPCTPTLLTRPPPPRFIYTSSSPLPPPPRFIYTTG

Query:  IPGNMYQVDANNRWYYFSGTRRKRPAMAVVVVALGCGALHLMGFGKW
        +PGN+YQ+DANNRWYYFSGT R   A A +VVALGCGAL+LM FGKW
Subjt:  IPGNMYQVDANNRWYYFSGTRRKRPAMAVVVVALGCGALHLMGFGKW

SwissProt top hitse value%identityAlignment
Q9LUI1 Leucine-rich repeat extensin-like protein 62.2e-0445.83Show/hide
Query:  SDAEIKCGSCPCSNPCVQQLPPPPPPPPTPPPCTPTLLTRPPPPRFIYTSSSPLPP-PPRFIYTTGIPGNMY
        S   I C S  CS P     PPPPPPPP PPP  P     PPPP ++Y S  P PP PP ++Y    P  +Y
Subjt:  SDAEIKCGSCPCSNPCVQQLPPPPPPPPTPPPCTPTLLTRPPPPRFIYTSSSPLPP-PPRFIYTTGIPGNMY

Arabidopsis top hitse value%identityAlignment
AT1G23040.1 hydroxyproline-rich glycoprotein family protein1.1e-0843.33Show/hide
Query:  HAQTSSPISVDPQNSDAEIKCGSCPCSNPCVQQLPPPPPPPPTPPP--CTPTLLTRPPPPRFIYTSSSPLPPPPRFIYTTGIPGNMYQVD
        +  +SS  S++ +  D   +     CS  C+Q  PPP PPPP+PPP  C P     PPPP+ + +S  P PPP  F+Y TG PGN+Y VD
Subjt:  HAQTSSPISVDPQNSDAEIKCGSCPCSNPCVQQLPPPPPPPPTPPP--CTPTLLTRPPPPRFIYTSSSPLPPPPRFIYTTGIPGNMYQVD

AT1G70990.1 proline-rich family protein1.5e-0537.72Show/hide
Query:  APSAAILLSLPF--FFLLIFFAHAQTSSPISVDPQNSDAEIKCGSCPCSNPCVQQLPPPPPPPPTPPP----CTPTLLTRPPPPRFIYTSSSPLPPPPRF
        A +A +L ++ F  F ++I  + + T+  +  DP      IKC       PC+Q +PPP PPPP+PPP    C P  L  P PP+  Y      PPP  +
Subjt:  APSAAILLSLPF--FFLLIFFAHAQTSSPISVDPQNSDAEIKCGSCPCSNPCVQQLPPPPPPPPTPPP----CTPTLLTRPPPPRFIYTSSSPLPPPPRF

Query:  IYTTGIPGNMYQVD
        IY TG PG +Y +D
Subjt:  IYTTGIPGNMYQVD

AT3G03350.1 NAD(P)-binding Rossmann-fold superfamily protein2.1e-0748.98Show/hide
Query:  RPPPPRFIYTS-SSPLPPPPRFIYTTGIPGNMYQVDANNRWYYFSGTRR
        RPPPPR  Y S SS  PPPP+++Y TG+PG +Y+ + +++W Y S   R
Subjt:  RPPPPRFIYTS-SSPLPPPPRFIYTTGIPGNMYQVDANNRWYYFSGTRR

AT3G03350.2 NAD(P)-binding Rossmann-fold superfamily protein1.3e-0941.79Show/hide
Query:  RPPPPRFIYTS-SSPLPPPPRFIYTTGIPGNMYQVDANNRWYYFSGTRRKRPAMAVVVVALGCGALH
        RPPPPR  Y S SS  PPPP+++Y TG+PG +Y+ + +++W Y S   R      +V+V +G G ++
Subjt:  RPPPPRFIYTS-SSPLPPPPRFIYTTGIPGNMYQVDANNRWYYFSGTRRKRPAMAVVVVALGCGALH

AT3G22800.1 Leucine-rich repeat (LRR) family protein1.5e-0545.83Show/hide
Query:  SDAEIKCGSCPCSNPCVQQLPPPPPPPPTPPPCTPTLLTRPPPPRFIYTSSSPLPP-PPRFIYTTGIPGNMY
        S   I C S  CS P     PPPPPPPP PPP  P     PPPP ++Y S  P PP PP ++Y    P  +Y
Subjt:  SDAEIKCGSCPCSNPCVQQLPPPPPPPPTPPPCTPTLLTRPPPPRFIYTSSSPLPP-PPRFIYTTGIPGNMY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCCTTCCGCCGCCATTTTACTCTCTCTACCTTTCTTCTTCCTCCTCATTTTCTTCGCCCACGCTCAAACCTCCTCTCCGATATCGGTAGATCCGCAAAATTCCGA
CGCCGAAATAAAATGTGGATCATGCCCTTGTTCCAACCCATGTGTTCAACAACTACCACCGCCGCCGCCGCCACCGCCAACTCCTCCTCCTTGTACCCCAACGCTGTTGA
CTCGACCACCGCCTCCTAGGTTTATTTATACATCGTCATCACCTCTACCACCACCTCCCAGGTTTATTTATACAACCGGCATTCCCGGTAACATGTACCAGGTCGATGCG
AATAATCGTTGGTATTACTTCTCCGGCACGAGGAGGAAGCGACCGGCCATGGCGGTGGTTGTGGTGGCGCTTGGCTGTGGAGCTTTGCATCTCATGGGGTTTGGTAAGTG
GTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGCCTTCCGCCGCCATTTTACTCTCTCTACCTTTCTTCTTCCTCCTCATTTTCTTCGCCCACGCTCAAACCTCCTCTCCGATATCGGTAGATCCGCAAAATTCCGA
CGCCGAAATAAAATGTGGATCATGCCCTTGTTCCAACCCATGTGTTCAACAACTACCACCGCCGCCGCCGCCACCGCCAACTCCTCCTCCTTGTACCCCAACGCTGTTGA
CTCGACCACCGCCTCCTAGGTTTATTTATACATCGTCATCACCTCTACCACCACCTCCCAGGTTTATTTATACAACCGGCATTCCCGGTAACATGTACCAGGTCGATGCG
AATAATCGTTGGTATTACTTCTCCGGCACGAGGAGGAAGCGACCGGCCATGGCGGTGGTTGTGGTGGCGCTTGGCTGTGGAGCTTTGCATCTCATGGGGTTTGGTAAGTG
GTGA
Protein sequenceShow/hide protein sequence
MAPSAAILLSLPFFFLLIFFAHAQTSSPISVDPQNSDAEIKCGSCPCSNPCVQQLPPPPPPPPTPPPCTPTLLTRPPPPRFIYTSSSPLPPPPRFIYTTGIPGNMYQVDA
NNRWYYFSGTRRKRPAMAVVVVALGCGALHLMGFGKW