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Lsi05G003120 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G003120
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionCalcium-binding EF-hand family protein
Genome locationchr05:3993198..3994363
RNA-Seq ExpressionLsi05G003120
SyntenyLsi05G003120
Gene Ontology termsGO:0005509 - calcium ion binding (molecular function)
InterPro domainsIPR002048 - EF-hand domain
IPR011992 - EF-hand domain pair
IPR018247 - EF-Hand 1, calcium-binding site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004149790.1 probable calcium-binding protein CML28 [Cucumis sativus]6.6e-3289.16Show/hide
Query:  MADSGVSSAECERIFKRFDANGDGKISATELGDALNGFGVNAEDAKRMMDAIDKDGDGCISFEEFADFAKDNRALMKDFAKAF
        MADSGV+SA+ ERIFKRFDANGDGKISATELGDALN FGV++EDAKRMMDAIDKDGDG ISF+EF DFAKDNRALMKDFAKAF
Subjt:  MADSGVSSAECERIFKRFDANGDGKISATELGDALNGFGVNAEDAKRMMDAIDKDGDGCISFEEFADFAKDNRALMKDFAKAF

XP_016902062.1 PREDICTED: polcalcin Bra n 2-like [Cucumis melo]2.4e-3491.57Show/hide
Query:  MADSGVSSAECERIFKRFDANGDGKISATELGDALNGFGVNAEDAKRMMDAIDKDGDGCISFEEFADFAKDNRALMKDFAKAF
        MADSGV+SA+CERIFKRFDANGDGKISATELGDALNGFGV++EDAKRMMDAIDKDGDG ISF+EF+DFAKDNRALMKDFAKAF
Subjt:  MADSGVSSAECERIFKRFDANGDGKISATELGDALNGFGVNAEDAKRMMDAIDKDGDGCISFEEFADFAKDNRALMKDFAKAF

XP_022948513.1 probable calcium-binding protein CML28 [Cucurbita moschata]3.0e-3287.95Show/hide
Query:  MADSGVSSAECERIFKRFDANGDGKISATELGDALNGFGVNAEDAKRMMDAIDKDGDGCISFEEFADFAKDNRALMKDFAKAF
        MAD+GV SAECERIFKRFDANGDG+ISATELGDALNG GV++EDAKRMMDAIDKDGDG ISF+EF +FAKDNRALMKDFAKAF
Subjt:  MADSGVSSAECERIFKRFDANGDGKISATELGDALNGFGVNAEDAKRMMDAIDKDGDGCISFEEFADFAKDNRALMKDFAKAF

XP_022982739.1 polcalcin Syr v 3-like [Cucurbita maxima]5.6e-3185.54Show/hide
Query:  MADSGVSSAECERIFKRFDANGDGKISATELGDALNGFGVNAEDAKRMMDAIDKDGDGCISFEEFADFAKDNRALMKDFAKAF
        MA+S +S+AECERIFKRFDANGDG ISA ELGDALNG GVNAE+AKRMMDAIDKDGDG IS+EEFADF K+NRALMKDFAKAF
Subjt:  MADSGVSSAECERIFKRFDANGDGKISATELGDALNGFGVNAEDAKRMMDAIDKDGDGCISFEEFADFAKDNRALMKDFAKAF

XP_038874793.1 probable calcium-binding protein CML28 [Benincasa hispida]9.8e-3693.98Show/hide
Query:  MADSGVSSAECERIFKRFDANGDGKISATELGDALNGFGVNAEDAKRMMDAIDKDGDGCISFEEFADFAKDNRALMKDFAKAF
        MA+SGVS+A+CERIFKRFDANGDGKISATELGDALNGFGV+AEDAKRMMDAIDKDGDGCISFEEFA+FAKDNRALMKDFAKAF
Subjt:  MADSGVSSAECERIFKRFDANGDGKISATELGDALNGFGVNAEDAKRMMDAIDKDGDGCISFEEFADFAKDNRALMKDFAKAF

TrEMBL top hitse value%identityAlignment
A0A0A0L775 Putative calcium-binding protein CML283.2e-3289.16Show/hide
Query:  MADSGVSSAECERIFKRFDANGDGKISATELGDALNGFGVNAEDAKRMMDAIDKDGDGCISFEEFADFAKDNRALMKDFAKAF
        MADSGV+SA+ ERIFKRFDANGDGKISATELGDALN FGV++EDAKRMMDAIDKDGDG ISF+EF DFAKDNRALMKDFAKAF
Subjt:  MADSGVSSAECERIFKRFDANGDGKISATELGDALNGFGVNAEDAKRMMDAIDKDGDGCISFEEFADFAKDNRALMKDFAKAF

A0A1S4E1G1 polcalcin Bra n 2-like1.2e-3491.57Show/hide
Query:  MADSGVSSAECERIFKRFDANGDGKISATELGDALNGFGVNAEDAKRMMDAIDKDGDGCISFEEFADFAKDNRALMKDFAKAF
        MADSGV+SA+CERIFKRFDANGDGKISATELGDALNGFGV++EDAKRMMDAIDKDGDG ISF+EF+DFAKDNRALMKDFAKAF
Subjt:  MADSGVSSAECERIFKRFDANGDGKISATELGDALNGFGVNAEDAKRMMDAIDKDGDGCISFEEFADFAKDNRALMKDFAKAF

A0A6J1G9I0 probable calcium-binding protein CML281.4e-3287.95Show/hide
Query:  MADSGVSSAECERIFKRFDANGDGKISATELGDALNGFGVNAEDAKRMMDAIDKDGDGCISFEEFADFAKDNRALMKDFAKAF
        MAD+GV SAECERIFKRFDANGDG+ISATELGDALNG GV++EDAKRMMDAIDKDGDG ISF+EF +FAKDNRALMKDFAKAF
Subjt:  MADSGVSSAECERIFKRFDANGDGKISATELGDALNGFGVNAEDAKRMMDAIDKDGDGCISFEEFADFAKDNRALMKDFAKAF

A0A6J1J5E7 polcalcin Syr v 3-like2.7e-3185.54Show/hide
Query:  MADSGVSSAECERIFKRFDANGDGKISATELGDALNGFGVNAEDAKRMMDAIDKDGDGCISFEEFADFAKDNRALMKDFAKAF
        MA+S +S+AECERIFKRFDANGDG ISA ELGDALNG GVNAE+AKRMMDAIDKDGDG IS+EEFADF K+NRALMKDFAKAF
Subjt:  MADSGVSSAECERIFKRFDANGDGKISATELGDALNGFGVNAEDAKRMMDAIDKDGDGCISFEEFADFAKDNRALMKDFAKAF

A0A6J1KB11 probable calcium-binding protein CML281.4e-3287.95Show/hide
Query:  MADSGVSSAECERIFKRFDANGDGKISATELGDALNGFGVNAEDAKRMMDAIDKDGDGCISFEEFADFAKDNRALMKDFAKAF
        MAD+GV SAECERIFKRFDANGDG+ISATELGDALNG GV++EDAKRMMDAIDKDGDG ISF+EF +FAKDNRALMKDFAKAF
Subjt:  MADSGVSSAECERIFKRFDANGDGKISATELGDALNGFGVNAEDAKRMMDAIDKDGDGCISFEEFADFAKDNRALMKDFAKAF

SwissProt top hitse value%identityAlignment
O81092 Polcalcin Ole e 32.3e-1963.1Show/hide
Query:  MADSGVSSAECERIFKRFDANGDGKISATELGDALNGFG-VNAEDAKRMMDAIDKDGDGCISFEEFADFAKDNRALMKDFAKAF
        MAD     AE ERIFKRFDANGDGKIS++ELG+ L   G V  E+ +RMM  ID DGDG ISFEEF  FA+ NR L+KD AK F
Subjt:  MADSGVSSAECERIFKRFDANGDGKISATELGDALNGFG-VNAEDAKRMMDAIDKDGDGCISFEEFADFAKDNRALMKDFAKAF

P69198 Polcalcin Bra n 27.1e-2165.48Show/hide
Query:  MADSGVSSAECERIFKRFDANGDGKISATELGDALNGFG-VNAEDAKRMMDAIDKDGDGCISFEEFADFAKDNRALMKDFAKAF
        MAD+    AE +RIFK+FDANGDGKISA+ELGDAL   G V  +D KRMM  ID DGDG IS++EF+DFA  NR LMKD AK F
Subjt:  MADSGVSSAECERIFKRFDANGDGKISATELGDALNGFG-VNAEDAKRMMDAIDKDGDGCISFEEFADFAKDNRALMKDFAKAF

P69199 Polcalcin Bra r 27.1e-2165.48Show/hide
Query:  MADSGVSSAECERIFKRFDANGDGKISATELGDALNGFG-VNAEDAKRMMDAIDKDGDGCISFEEFADFAKDNRALMKDFAKAF
        MAD+    AE +RIFK+FDANGDGKISA+ELGDAL   G V  +D KRMM  ID DGDG IS++EF+DFA  NR LMKD AK F
Subjt:  MADSGVSSAECERIFKRFDANGDGKISATELGDALNGFG-VNAEDAKRMMDAIDKDGDGCISFEEFADFAKDNRALMKDFAKAF

Q9LF54 Probable calcium-binding protein CML291.8e-1964.29Show/hide
Query:  MADSGVSSAECERIFKRFDANGDGKISATELGDALNGFG-VNAEDAKRMMDAIDKDGDGCISFEEFADFAKDNRALMKDFAKAF
        MAD+    AE +RIFK+FDANGDGKISA EL +AL   G V A+D KRMM  ID DGDG IS++EF DFA  NR LMKD AK F
Subjt:  MADSGVSSAECERIFKRFDANGDGKISATELGDALNGFG-VNAEDAKRMMDAIDKDGDGCISFEEFADFAKDNRALMKDFAKAF

Q9SRP7 Probable calcium-binding protein CML287.1e-2166.67Show/hide
Query:  MADSGVSSAECERIFKRFDANGDGKISATELGDALNGFG-VNAEDAKRMMDAIDKDGDGCISFEEFADFAKDNRALMKDFAKAF
        MAD+    AE +RIFK+FDANGDGKISA ELGDAL   G V  ED KRMM  ID DGDG IS++EF DFA  NR LMKD AK F
Subjt:  MADSGVSSAECERIFKRFDANGDGKISATELGDALNGFG-VNAEDAKRMMDAIDKDGDGCISFEEFADFAKDNRALMKDFAKAF

Arabidopsis top hitse value%identityAlignment
AT1G05990.1 EF hand calcium-binding protein family3.2e-0839.68Show/hide
Query:  ECERIFKRFDANGDGKISATELGDALNGFGVNAEDAK--RMMDAIDKDGDGCISFEEFADFAK
        E +R+F+ FD NGDG I+  EL + L   G+   D +  +M++ ID +GDGC+  +EF +  K
Subjt:  ECERIFKRFDANGDGKISATELGDALNGFGVNAEDAK--RMMDAIDKDGDGCISFEEFADFAK

AT1G24620.1 EF hand calcium-binding protein family2.2e-0940.51Show/hide
Query:  ECERIFKRFDANGDGKISATELGDALNGFG--VNAEDAKRMMDAIDKDGDGCISFEEFADF---AKDNRALMKDFAKAF
        E E +FK+FD NGDGKIS+ ELG  +   G  V  E+ ++ +  ID+ GDG I+FEEF +      D   ++++   AF
Subjt:  ECERIFKRFDANGDGKISATELGDALNGFG--VNAEDAKRMMDAIDKDGDGCISFEEFADF---AKDNRALMKDFAKAF

AT2G43290.1 Calcium-binding EF-hand family protein1.4e-0840.32Show/hide
Query:  VSSAECERIFKRFDANGDGKISATELGDALNGFGVNA--EDAKRMMDAIDKDGDGCISFEEF
        +  +E +R+F+ FD NGDG+I+  EL D+L   G+    +D  +M+  ID +GDGC+  +EF
Subjt:  VSSAECERIFKRFDANGDGKISATELGDALNGFGVNA--EDAKRMMDAIDKDGDGCISFEEF

AT3G03430.1 Calcium-binding EF-hand family protein5.1e-2266.67Show/hide
Query:  MADSGVSSAECERIFKRFDANGDGKISATELGDALNGFG-VNAEDAKRMMDAIDKDGDGCISFEEFADFAKDNRALMKDFAKAF
        MAD+    AE +RIFK+FDANGDGKISA ELGDAL   G V  ED KRMM  ID DGDG IS++EF DFA  NR LMKD AK F
Subjt:  MADSGVSSAECERIFKRFDANGDGKISATELGDALNGFG-VNAEDAKRMMDAIDKDGDGCISFEEFADFAKDNRALMKDFAKAF

AT5G17480.1 pollen calcium-binding protein 11.2e-2064.29Show/hide
Query:  MADSGVSSAECERIFKRFDANGDGKISATELGDALNGFG-VNAEDAKRMMDAIDKDGDGCISFEEFADFAKDNRALMKDFAKAF
        MAD+    AE +RIFK+FDANGDGKISA EL +AL   G V A+D KRMM  ID DGDG IS++EF DFA  NR LMKD AK F
Subjt:  MADSGVSSAECERIFKRFDANGDGKISATELGDALNGFG-VNAEDAKRMMDAIDKDGDGCISFEEFADFAKDNRALMKDFAKAF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGACAGTGGCGTAAGCTCAGCCGAATGCGAGAGGATTTTCAAGCGATTCGATGCTAATGGCGACGGGAAGATCTCGGCGACGGAGCTGGGCGATGCTTTGAACGG
ATTTGGAGTGAACGCTGAGGACGCCAAGAGGATGATGGACGCCATTGATAAAGATGGCGATGGCTGCATTTCCTTTGAAGAGTTCGCCGATTTTGCTAAGGATAATCGCG
CTTTGATGAAGGATTTTGCCAAGGCGTTTTAG
mRNA sequenceShow/hide mRNA sequence
GATGGATGAAGAACACATCCCCAATGGCTTCGCAAAATCACAAATCTGATTGCCCTAACTTCAGCAAAAATCAGTTGAACAGAGCGATTTCGATGTAGAAGGAGACAACA
CCAGGTGTTTCCAATGCCAATAATTTAGGGCAAAATAGCGATTATTAAAGGAGCAATGAAAATTGAAGAAGAGGAGAAAGAAAGAAGCATTTGCCCTAAGTTTCAGATTC
ATTCCAAATCAAAGTTAAGTGCAGAAAATGGCGGACAGTGGCGTAAGCTCAGCCGAATGCGAGAGGATTTTCAAGCGATTCGATGCTAATGGCGACGGGAAGATCTCGGC
GACGGAGCTGGGCGATGCTTTGAACGGATTTGGAGTGAACGCTGAGGACGCCAAGAGGATGATGGACGCCATTGATAAAGATGGCGATGGCTGCATTTCCTTTGAAGAGT
TCGCCGATTTTGCTAAGGATAATCGCGCTTTGATGAAGGATTTTGCCAAGGCGTTTTAGTTCTCCATTGCCTTGCCACTTGTTCTCGATGGTGCCCTCACTGGTAGTCTC
CGTTTCAGAAAAAGTGGCATCGGCTTGAGAGTGGTTGCCTCTAACTTATCTATGGAAAGGTTGCTTGGCTTGAGAGTGGTTGCCTCTAACTTATCTATGGAAAGGTTGCT
TAAAGTGCATATACACAGAGGCAAAGAGAGAGAATTAATGTACACAGG
Protein sequenceShow/hide protein sequence
MADSGVSSAECERIFKRFDANGDGKISATELGDALNGFGVNAEDAKRMMDAIDKDGDGCISFEEFADFAKDNRALMKDFAKAF