CuGenDBv2

Gene ID	Lsi05G003360
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Photosystem II CP43 reaction center protein
Genome location	chr05:4255151..4260210
RNA-Seq Expression	Lsi05G003360
Synteny	Lsi05G003360
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0009772 - photosynthetic electron transport in photosystem II (biological process) GO:0018298 - protein-chromophore linkage (biological process) GO:0009523 - photosystem II (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0015934 - large ribosomal subunit (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0016168 - chlorophyll binding (molecular function) GO:0016740 - transferase activity (molecular function) GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR000932 - Photosystem antenna protein-like IPR036001 - Photosystem antenna protein-like superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAD4981686.1 hypothetical protein E3N88_18357 [Mikania micrantha]

5.6e-28

96.92

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Query:  GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPKTLEESFPFFSYVWKDRNKMTTILD
        GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGP+TLEESFPFF YVWKDRNKMTTILD
Subjt:  GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPKTLEESFPFFSYVWKDRNKMTTILD

KAG2273746.1 hypothetical protein Bca52824_056301 [Brassica carinata]

1.6e-27

74.73

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Query:  HTNLYPEAAGSKHNTLVVFYV----RLGVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPKTLEESFPFFSYVWKDRNKMTTIL
        H  L    AG+ +   V  +V     LGVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGP+TLEE FPFF YVWKDRNKMTTIL
Subjt:  HTNLYPEAAGSKHNTLVVFYV----RLGVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPKTLEESFPFFSYVWKDRNKMTTIL

RYQ93204.1 hypothetical protein Ahy_B09g099478 [Arachis hypogaea]

2.1e-27

94.03

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Query:  GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPKTLEESFPFFSYVWKDRNKMTTILDDK
        GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGP+TLEESFPFF YVWKDRNKMTTIL  K
Subjt:  GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPKTLEESFPFFSYVWKDRNKMTTILDDK

TYG57474.1 hypothetical protein ES288_D08G144400v1, partial [Gossypium darwinii]

7.3e-28

92.65

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Query:  YVRLGVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPKTLEESFPFFSYVWKDRNKMTTIL
        Y RLGVGPGGEVIDTFPYFVSGVLHLISS+VLGFG IYHALLGP+TLEESFPFF YVWKDRNKMTTIL
Subjt:  YVRLGVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPKTLEESFPFFSYVWKDRNKMTTIL

XP_028072669.1 uncharacterized protein LOC114274889 [Camellia sinensis]

1.6e-27

95.45

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Query:  RLGVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPKTLEESFPFFSYVWKDRNKMTTIL
        RLG GPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGP+TLEESFPFF YVWKDRNKMTTIL
Subjt:  RLGVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPKTLEESFPFFSYVWKDRNKMTTIL

TrEMBL top hits

e value

%identity

Alignment

A0A2L0VCR7 Photosystem II CP43 reaction center protein

1.3e-27

96.88

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Query:  GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPKTLEESFPFFSYVWKDRNKMTTIL
        GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGP+TLEESFPFF YVWKDRNKMTTIL
Subjt:  GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPKTLEESFPFFSYVWKDRNKMTTIL

A0A411D8D7 Photosystem II CP43 reaction center protein

1.3e-27

96.88

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Query:  GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPKTLEESFPFFSYVWKDRNKMTTIL
        GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGP+TLEESFPFF YVWKDRNKMTTIL
Subjt:  GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPKTLEESFPFFSYVWKDRNKMTTIL

A0A444XUS6 Uncharacterized protein

1.0e-27

94.03

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Query:  GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPKTLEESFPFFSYVWKDRNKMTTILDDK
        GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGP+TLEESFPFF YVWKDRNKMTTIL  K
Subjt:  GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPKTLEESFPFFSYVWKDRNKMTTILDDK

A0A5D2BJ64 Uncharacterized protein (Fragment)

3.5e-28

92.65

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Query:  YVRLGVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPKTLEESFPFFSYVWKDRNKMTTIL
        Y RLGVGPGGEVIDTFPYFVSGVLHLISS+VLGFG IYHALLGP+TLEESFPFF YVWKDRNKMTTIL
Subjt:  YVRLGVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPKTLEESFPFFSYVWKDRNKMTTIL

A0A5N6NK48 Ribosomal_L2_C domain-containing protein

2.7e-28

96.92

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Query:  GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPKTLEESFPFFSYVWKDRNKMTTILD
        GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGP+TLEESFPFF YVWKDRNKMTTILD
Subjt:  GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPKTLEESFPFFSYVWKDRNKMTTILD

SwissProt top hits

e value

%identity

Alignment

A4QK14 Photosystem II CP43 reaction center protein

3.6e-30

96.88

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Query:  GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPKTLEESFPFFSYVWKDRNKMTTIL
        GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGP+TLEESFPFF YVWKDRNKMTTIL
Subjt:  GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPKTLEESFPFFSYVWKDRNKMTTIL

A9LYI1 Photosystem II CP43 reaction center protein

3.6e-30

96.88

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Query:  GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPKTLEESFPFFSYVWKDRNKMTTIL
        GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGP+TLEESFPFF YVWKDRNKMTTIL
Subjt:  GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPKTLEESFPFFSYVWKDRNKMTTIL

P56778 Photosystem II CP43 reaction center protein

3.6e-30

96.88

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Query:  GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPKTLEESFPFFSYVWKDRNKMTTIL
        GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGP+TLEESFPFF YVWKDRNKMTTIL
Subjt:  GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPKTLEESFPFFSYVWKDRNKMTTIL

Q3V538 Photosystem II CP43 reaction center protein

3.6e-30

96.88

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Query:  GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPKTLEESFPFFSYVWKDRNKMTTIL
        GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGP+TLEESFPFF YVWKDRNKMTTIL
Subjt:  GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPKTLEESFPFFSYVWKDRNKMTTIL

Q70Y07 Photosystem II CP43 reaction center protein

3.6e-30

96.88

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Query:  GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPKTLEESFPFFSYVWKDRNKMTTIL
        GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGP+TLEESFPFF YVWKDRNKMTTIL
Subjt:  GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPKTLEESFPFFSYVWKDRNKMTTIL

Arabidopsis top hits

e value

%identity

Alignment

ATCG00280.1 photosystem II reaction center protein C

2.6e-31

96.88

Show/hide

Query:  GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPKTLEESFPFFSYVWKDRNKMTTIL
        GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGP+TLEESFPFF YVWKDRNKMTTIL
Subjt:  GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPKTLEESFPFFSYVWKDRNKMTTIL

Sequences

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CDS sequence

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ATGGAACATACAAATCTTTATCCTGAAGCAGCCGGATCAAAGCACAATACACTTGTCGTTTTCTACGTTAGGTTGGGGGTAGGTCCTGGTGGGGAAGTTATAGATACATT
TCCTTACTTTGTGTCTGGAGTACTTCACTTAATTTCATCCGCAGTATTGGGTTTTGGCGGTATTTATCATGCACTTCTGGGACCCAAGACCCTTGAAGAATCTTTTCCAT
TCTTCAGTTATGTGTGGAAAGATAGAAATAAAATGACTACCATTTTAGATGACAAAAACTTCTGGAGGTCCACTAAAAACTGTCTTTCGATAAATGGCACCAATATAAGC
TCTGTGATGCTACTAGAAGTTTCCAGAAAGAGGACCTCAAACCAAGAAACTGCTTCAAAGAAAACAATCATAATCCACTGA

mRNA sequence

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Protein sequence

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MEHTNLYPEAAGSKHNTLVVFYVRLGVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPKTLEESFPFFSYVWKDRNKMTTILDDKNFWRSTKNCLSINGTNIS
SVMLLEVSRKRTSNQETASKKTIIIH

Lsi05G003360 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome