CuGenDBv2

Gene ID	Lsi05G003630
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	TF-B3 domain-containing protein
Genome location	chr05:4604462..4605834
RNA-Seq Expression	Lsi05G003630
Synteny	Lsi05G003630
Gene Ontology terms	GO:0005634 - nucleus (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0003677 - DNA binding (molecular function)
InterPro domains	IPR003340 - B3 DNA binding domain IPR015300 - DNA-binding pseudobarrel domain superfamily IPR044837 - B3 domain-containing protein REM16-like

Homology

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GenBank top hits

e value

%identity

Alignment

XP_011650806.1 B3 domain-containing protein Os04g0386900 [Cucumis sativus]

1.1e-53

70.95

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Query:  MQSGQEEALPTPTMESPQNGEILPLLGKPYHPFILSKSHVPPIYNICMPTKFHSILPAIMIPTTIFCGEKVWKIDYYGNRRSKALDAKQWKKFVNDNGLK
        MQS ++     PTME PQNGE +PL GKPYH FILSKSHV PIYN+ +P KFHSILPAI+IP  + C  K WKIDY+GNRR KALD+KQW+KFVNDN LK
Subjt:  MQSGQEEALPTPTMESPQNGEILPLLGKPYHPFILSKSHVPPIYNICMPTKFHSILPAIMIPTTIFCGEKVWKIDYYGNRRSKALDAKQWKKFVNDNGLK

Query:  CGDACVFELLECRSTLLKFRVQILRGHIPFQLHHKFSGETKETPIIID
         GDA VFELLEC S++LKFRVQIL G IP +LH KFSGETKETPI +D
Subjt:  CGDACVFELLECRSTLLKFRVQILRGHIPFQLHHKFSGETKETPIIID

XP_022941967.1 B3 domain-containing protein Os04g0386900-like [Cucurbita moschata]

3.4e-55

70.95

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Query:  MQSGQEEALPTPTMESPQNGEILPLLGKPYHPFILSKSHVPPIYNICMPTKFHSILPAIMIPTTIFCGEKVWKIDYYGNRRSKALDAKQWKKFVNDNGLK
        MQS QE+  P PT   PQN  ILPL GKPYH  ILSKSHV PI N+ +P KFHS+LPAIMIP  ++C  K WKIDYYGNRR KALD KQW+KFVNDN LK
Subjt:  MQSGQEEALPTPTMESPQNGEILPLLGKPYHPFILSKSHVPPIYNICMPTKFHSILPAIMIPTTIFCGEKVWKIDYYGNRRSKALDAKQWKKFVNDNGLK

Query:  CGDACVFELLECRSTLLKFRVQILRGHIPFQLHHKFSGETKETPIIID
        CGDACVFEL+EC S+++KFRVQILRG IPF+LH KFSGE++ TPI+ID
Subjt:  CGDACVFELLECRSTLLKFRVQILRGHIPFQLHHKFSGETKETPIIID

XP_022974195.1 B3 domain-containing protein Os04g0386900-like [Cucurbita maxima]

1.7e-54

70.95

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Query:  MQSGQEEALPTPTMESPQNGEILPLLGKPYHPFILSKSHVPPIYNICMPTKFHSILPAIMIPTTIFCGEKVWKIDYYGNRRSKALDAKQWKKFVNDNGLK
        MQS QE+    PT   PQN  ILPL GKPYH  ILSKSHV PI N+ +P KFHS+LPAIMIP  ++C  K WKIDYYGNRR KALD KQW+KFVNDN LK
Subjt:  MQSGQEEALPTPTMESPQNGEILPLLGKPYHPFILSKSHVPPIYNICMPTKFHSILPAIMIPTTIFCGEKVWKIDYYGNRRSKALDAKQWKKFVNDNGLK

Query:  CGDACVFELLECRSTLLKFRVQILRGHIPFQLHHKFSGETKETPIIID
        CGDACVFEL+EC S++LKFRVQILRG IPF+LH KFSGE++ TPI+ID
Subjt:  CGDACVFELLECRSTLLKFRVQILRGHIPFQLHHKFSGETKETPIIID

XP_023539026.1 B3 domain-containing protein Os04g0386900-like [Cucurbita pepo subsp. pepo]

1.3e-54

70.95

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Query:  MQSGQEEALPTPTMESPQNGEILPLLGKPYHPFILSKSHVPPIYNICMPTKFHSILPAIMIPTTIFCGEKVWKIDYYGNRRSKALDAKQWKKFVNDNGLK
        MQS QE+    PT   PQN  ILPL GKPYH  ILSKSHV PI N+ MP KFHS+LPAIMIP  ++C  K WKIDYYGNRR KALD KQW+KFVNDN LK
Subjt:  MQSGQEEALPTPTMESPQNGEILPLLGKPYHPFILSKSHVPPIYNICMPTKFHSILPAIMIPTTIFCGEKVWKIDYYGNRRSKALDAKQWKKFVNDNGLK

Query:  CGDACVFELLECRSTLLKFRVQILRGHIPFQLHHKFSGETKETPIIID
        CGDACVFEL+EC S+++KFRVQILRG IPF+LH KFSGE++ TPI+ID
Subjt:  CGDACVFELLECRSTLLKFRVQILRGHIPFQLHHKFSGETKETPIIID

XP_038903804.1 B3 domain-containing protein Os04g0386900-like [Benincasa hispida]

9.9e-55

71.62

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Query:  MQSGQEEALPTPTMESPQNGEILPLLGKPYHPFILSKSHVPPIYNICMPTKFHSILPAIMIPTTIFCGEKVWKIDYYGNRRSKALDAKQWKKFVNDNGLK
        MQS ++     PTME PQ+GEILPL GKPYH FILSKSHV PI ++ +P KFHSILPAI+IP  +FC  K W IDYYGNRR KALD KQW+KFVNDN LK
Subjt:  MQSGQEEALPTPTMESPQNGEILPLLGKPYHPFILSKSHVPPIYNICMPTKFHSILPAIMIPTTIFCGEKVWKIDYYGNRRSKALDAKQWKKFVNDNGLK

Query:  CGDACVFELLECRSTLLKFRVQILRGHIPFQLHHKFSGETKETPIIID
         GDACVFEL+EC S++LKFRVQILRG IPFQLH KFSGETK+TPI ++
Subjt:  CGDACVFELLECRSTLLKFRVQILRGHIPFQLHHKFSGETKETPIIID

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L3V3 TF-B3 domain-containing protein

5.3e-54

70.95

Show/hide

Query:  MQSGQEEALPTPTMESPQNGEILPLLGKPYHPFILSKSHVPPIYNICMPTKFHSILPAIMIPTTIFCGEKVWKIDYYGNRRSKALDAKQWKKFVNDNGLK
        MQS ++     PTME PQNGE +PL GKPYH FILSKSHV PIYN+ +P KFHSILPAI+IP  + C  K WKIDY+GNRR KALD+KQW+KFVNDN LK
Subjt:  MQSGQEEALPTPTMESPQNGEILPLLGKPYHPFILSKSHVPPIYNICMPTKFHSILPAIMIPTTIFCGEKVWKIDYYGNRRSKALDAKQWKKFVNDNGLK

Query:  CGDACVFELLECRSTLLKFRVQILRGHIPFQLHHKFSGETKETPIIID
         GDA VFELLEC S++LKFRVQIL G IP +LH KFSGETKETPI +D
Subjt:  CGDACVFELLECRSTLLKFRVQILRGHIPFQLHHKFSGETKETPIIID

A0A5D3CJR1 B3 domain-containing protein

8.5e-44

83.33

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Query:  HSILPAIMIPTTIFCGEKVWKIDYYGNRRSKALDAKQWKKFVNDNGLKCGDACVFELLECRSTLLKFRVQILRGHIPFQLHHKFSGETKETPIIID
        +S+LP IMIPT I+CGEKVWK++YYGNRRSKAL++KQWKKFVNDNGLKCGD CVFELLEC ++LLKFRVQILRGHIPFQLHHKF+GETK+TPI+ID
Subjt:  HSILPAIMIPTTIFCGEKVWKIDYYGNRRSKALDAKQWKKFVNDNGLKCGDACVFELLECRSTLLKFRVQILRGHIPFQLHHKFSGETKETPIIID

A0A6J1D033 B3 domain-containing protein Os04g0386900-like

3.3e-48

64.19

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Query:  MQSGQEEALPTPTMESPQNGEILPLLGKPYHPFILSKSHVPPIYNICMPTKFHSILPAIMIPTTIFCGEKVWKIDYYGNRRSKALDAKQWKKFVNDNGLK
        MQS ++      TME P+N EI PL  KP+H  IL+KSHV PIYN+ +P KFHS+LPAI+I   ++CG K W +DYYGNRR K+LD + W+KFVNDN LK
Subjt:  MQSGQEEALPTPTMESPQNGEILPLLGKPYHPFILSKSHVPPIYNICMPTKFHSILPAIMIPTTIFCGEKVWKIDYYGNRRSKALDAKQWKKFVNDNGLK

Query:  CGDACVFELLECRSTLLKFRVQILRGHIPFQLHHKFSGETKETPIIID
         GDACVFEL+EC S+ LKFRVQILRG IP QLH KFSGE+K+TPI ID
Subjt:  CGDACVFELLECRSTLLKFRVQILRGHIPFQLHHKFSGETKETPIIID

A0A6J1FTK2 B3 domain-containing protein Os04g0386900-like

1.6e-55

70.95

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Query:  MQSGQEEALPTPTMESPQNGEILPLLGKPYHPFILSKSHVPPIYNICMPTKFHSILPAIMIPTTIFCGEKVWKIDYYGNRRSKALDAKQWKKFVNDNGLK
        MQS QE+  P PT   PQN  ILPL GKPYH  ILSKSHV PI N+ +P KFHS+LPAIMIP  ++C  K WKIDYYGNRR KALD KQW+KFVNDN LK
Subjt:  MQSGQEEALPTPTMESPQNGEILPLLGKPYHPFILSKSHVPPIYNICMPTKFHSILPAIMIPTTIFCGEKVWKIDYYGNRRSKALDAKQWKKFVNDNGLK

Query:  CGDACVFELLECRSTLLKFRVQILRGHIPFQLHHKFSGETKETPIIID
        CGDACVFEL+EC S+++KFRVQILRG IPF+LH KFSGE++ TPI+ID
Subjt:  CGDACVFELLECRSTLLKFRVQILRGHIPFQLHHKFSGETKETPIIID

A0A6J1IDC2 B3 domain-containing protein Os04g0386900-like

8.2e-55

70.95

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Query:  MQSGQEEALPTPTMESPQNGEILPLLGKPYHPFILSKSHVPPIYNICMPTKFHSILPAIMIPTTIFCGEKVWKIDYYGNRRSKALDAKQWKKFVNDNGLK
        MQS QE+    PT   PQN  ILPL GKPYH  ILSKSHV PI N+ +P KFHS+LPAIMIP  ++C  K WKIDYYGNRR KALD KQW+KFVNDN LK
Subjt:  MQSGQEEALPTPTMESPQNGEILPLLGKPYHPFILSKSHVPPIYNICMPTKFHSILPAIMIPTTIFCGEKVWKIDYYGNRRSKALDAKQWKKFVNDNGLK

Query:  CGDACVFELLECRSTLLKFRVQILRGHIPFQLHHKFSGETKETPIIID
        CGDACVFEL+EC S++LKFRVQILRG IPF+LH KFSGE++ TPI+ID
Subjt:  CGDACVFELLECRSTLLKFRVQILRGHIPFQLHHKFSGETKETPIIID

SwissProt top hits

e value

%identity

Alignment

Q7XLP4 B3 domain-containing protein Os04g0386900

3.0e-22

38.82

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Query:  SGQEEALPTPTMESPQ---NGEILPLLGKPYHPFILSKSHVPPIYNICMPTKFHSILPAIMIPTTIFCGEKVWKIDYYGNRRSKALDAKQWKKFVNDNGL
        +G E A P P    P+      +LPLLGKPY   I+ KSHV P + + +P  F  +LP+   P T+    + W + + G R  + L+A  W+ F  DN L
Subjt:  SGQEEALPTPTMESPQ---NGEILPLLGKPYHPFILSKSHVPPIYNICMPTKFHSILPAIMIPTTIFCGEKVWKIDYYGNRRSKALDAKQWKKFVNDNGL

Query:  KCGDACVFELL---ECRSTLLKFRVQILRGHIPFQLHHKFSGETKETPIIID
        + GD CVFELL         ++FRVQ+LR  IP ++  +  G T  TPI+ID
Subjt:  KCGDACVFELL---ECRSTLLKFRVQILRGHIPFQLHHKFSGETKETPIIID

Q9LHY9 B3 domain-containing protein Os06g0112300

2.3e-14

35.33

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Query:  EEALPTPTMESPQNGE----ILPL-LGKPYHPFILSKSHVPPIYNICMPTKFHSIL--PAIMIPTTIFCGEKVWKIDYYGNRRSKALDAKQWKKFVNDNG
        ++ LP P   +  +GE      PL  G P+   +++KSH+ P + + +P +F   L  P       +  G K W   Y G+ + K LDA  W +F  DN 
Subjt:  EEALPTPTMESPQNGE----ILPL-LGKPYHPFILSKSHVPPIYNICMPTKFHSIL--PAIMIPTTIFCGEKVWKIDYYGNRRSKALDAKQWKKFVNDNG

Query:  LKCGDACVFELLECRST-LLKFRVQILRGHIPFQLHHKFSGETKETPIII
        L  GDACVFEL+   +   L+F+VQILRG +P ++     G T + PI+I
Subjt:  LKCGDACVFELLECRST-LLKFRVQILRGHIPFQLHHKFSGETKETPIII

Arabidopsis top hits

e value

%identity

Alignment

AT4G33280.1 AP2/B3-like transcriptional factor family protein

7.7e-05

42.59

Show/hide

Query:  KIDYYGNRRSKALDAKQWKKFVNDNGLKCGDACVFELLECRSTLLKFRVQILRG
        K + +G R S  + +  WKKFV DN L+ GD CVFE     +  L   V I RG
Subjt:  KIDYYGNRRSKALDAKQWKKFVNDNGLKCGDACVFELLECRSTLLKFRVQILRG

Sequences

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CDS sequence

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ATGCAGTCCGGCCAAGAGGAAGCACTTCCAACTCCAACAATGGAATCCCCGCAGAATGGTGAAATTTTGCCACTTTTAGGCAAACCCTACCATCCTTTTATTCTTTCTAA
ATCGCATGTCCCTCCCATTTACAATATTTGTATGCCAACAAAATTTCACTCTATTTTACCTGCTATTATGATCCCTACGACTATTTTCTGTGGGGAAAAGGTATGGAAGA
TAGATTATTATGGGAACAGACGCAGTAAAGCACTTGATGCAAAACAATGGAAGAAGTTTGTTAATGATAATGGTTTGAAGTGTGGAGATGCTTGTGTGTTTGAGCTCTTG
GAATGTAGAAGCACTTTACTCAAATTCAGAGTTCAAATTCTTAGAGGTCATATCCCTTTCCAGTTGCACCACAAGTTTAGTGGAGAAACTAAAGAGACCCCTATAATCAT
TGACTAG

mRNA sequence

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Protein sequence

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MQSGQEEALPTPTMESPQNGEILPLLGKPYHPFILSKSHVPPIYNICMPTKFHSILPAIMIPTTIFCGEKVWKIDYYGNRRSKALDAKQWKKFVNDNGLKCGDACVFELL
ECRSTLLKFRVQILRGHIPFQLHHKFSGETKETPIIID

Lsi05G003630 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome