CuGenDBv2

Gene ID	Lsi05G003940
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	centromere protein F
Genome location	chr05:4982681..4983455
RNA-Seq Expression	Lsi05G003940
Synteny	Lsi05G003940
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008461579.1 PREDICTED: centromere protein F [Cucumis melo]

8.8e-64

93.15

Show/hide

Query:  MEDTVQELEKRWAEIQDKALKQPSPVQREKMLDKQLHSLIEQLAVKQAQAEGLASDIHLKEMELEKLNASSRRLQSSSSEAKIARNRFGRSMSDKNFSDH
        MEDT++ELEK+WAEIQDKALKQPSPVQREKMLDKQLHSLIEQLAVKQAQAEGLASDIHLKEMELEKLNASSRRLQSSSSEA IARNRFGRSMSDKNF DH
Subjt:  MEDTVQELEKRWAEIQDKALKQPSPVQREKMLDKQLHSLIEQLAVKQAQAEGLASDIHLKEMELEKLNASSRRLQSSSSEAKIARNRFGRSMSDKNFSDH

Query:  LADSHHKLPYRVGGRSENQQRLMILRSAFVLYILALHILVFIKISF
        LA+SHHKLPYR GGRSENQQRLM+ RSAFV+YILALHILVFIKISF
Subjt:  LADSHHKLPYRVGGRSENQQRLMILRSAFVLYILALHILVFIKISF

XP_022935341.1 uncharacterized protein PFB0145c [Cucurbita moschata]

4.4e-63

92.47

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Query:  MEDTVQELEKRWAEIQDKALKQPSPVQREKMLDKQLHSLIEQLAVKQAQAEGLASDIHLKEMELEKLNASSRRLQSSSSEAKIARNRFGRSMSDKNFSDH
        MEDTV++LEKRWA++QDKALKQPSPVQR KMLDKQLHSL+EQLAVKQAQAEGLASDIHLKEMELEKLNASSRRLQSSSSEA IARNRFGRSMSDKNFSDH
Subjt:  MEDTVQELEKRWAEIQDKALKQPSPVQREKMLDKQLHSLIEQLAVKQAQAEGLASDIHLKEMELEKLNASSRRLQSSSSEAKIARNRFGRSMSDKNFSDH

Query:  LADSHHKLPYRVGGRSENQQRLMILRSAFVLYILALHILVFIKISF
        LADSHHKLPYR GGRS++QQRLM+LRSAFVLYILALHILVFIKISF
Subjt:  LADSHHKLPYRVGGRSENQQRLMILRSAFVLYILALHILVFIKISF

XP_022983408.1 rab11 family-interacting protein 3 [Cucurbita maxima]

7.5e-63

93.15

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Query:  MEDTVQELEKRWAEIQDKALKQPSPVQREKMLDKQLHSLIEQLAVKQAQAEGLASDIHLKEMELEKLNASSRRLQSSSSEAKIARNRFGRSMSDKNFSDH
        MEDTV++LEKRWAEIQDKALKQPSPVQR KMLDKQLHSL+EQLAVKQAQAEGLASDIHLKEMELEKLNASSRRLQSSSSEA IARNRFGRSMSDKNF DH
Subjt:  MEDTVQELEKRWAEIQDKALKQPSPVQREKMLDKQLHSLIEQLAVKQAQAEGLASDIHLKEMELEKLNASSRRLQSSSSEAKIARNRFGRSMSDKNFSDH

Query:  LADSHHKLPYRVGGRSENQQRLMILRSAFVLYILALHILVFIKISF
        LADSHHKLPYR GGRSE+QQ+LM+LRSAFVLYILALHILVFIKISF
Subjt:  LADSHHKLPYRVGGRSENQQRLMILRSAFVLYILALHILVFIKISF

XP_023528196.1 uncharacterized protein PFB0145c [Cucurbita pepo subsp. pepo]

1.5e-63

93.84

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Query:  MEDTVQELEKRWAEIQDKALKQPSPVQREKMLDKQLHSLIEQLAVKQAQAEGLASDIHLKEMELEKLNASSRRLQSSSSEAKIARNRFGRSMSDKNFSDH
        MEDTV++LEKRWAEIQDKALKQPSPVQR KMLDKQLHSL+EQLAVKQAQAEGLASDIHLKEMELEKLNASSRRLQSSSSEA IARNRFGRSMSDKNFSDH
Subjt:  MEDTVQELEKRWAEIQDKALKQPSPVQREKMLDKQLHSLIEQLAVKQAQAEGLASDIHLKEMELEKLNASSRRLQSSSSEAKIARNRFGRSMSDKNFSDH

Query:  LADSHHKLPYRVGGRSENQQRLMILRSAFVLYILALHILVFIKISF
        LADSHHKLPYR GGRS++QQRLM+LRSAFVLYILALHILVFIKISF
Subjt:  LADSHHKLPYRVGGRSENQQRLMILRSAFVLYILALHILVFIKISF

XP_038895964.1 golgin subfamily A member 1 [Benincasa hispida]

5.7e-63

93.15

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Query:  MEDTVQELEKRWAEIQDKALKQPSPVQREKMLDKQLHSLIEQLAVKQAQAEGLASDIHLKEMELEKLNASSRRLQSSSSEAKIARNRFGRSMSDKNFSDH
        MEDTV+ELEKRW EIQDK+LKQPSPVQREKMLDKQLHSLIEQLAVKQAQAEGLASDIHLKEMELEKLNAS RRLQSSSSEAKIARNRFGRSMSDKNFSDH
Subjt:  MEDTVQELEKRWAEIQDKALKQPSPVQREKMLDKQLHSLIEQLAVKQAQAEGLASDIHLKEMELEKLNASSRRLQSSSSEAKIARNRFGRSMSDKNFSDH

Query:  LADSHHKLPYRVGGRSENQQRLMILRSAFVLYILALHILVFIKISF
        L+DSHH+LP R GGRSENQQRLM+LRSAFVLYILALHI+VFIKISF
Subjt:  LADSHHKLPYRVGGRSENQQRLMILRSAFVLYILALHILVFIKISF

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L9S6 Uncharacterized protein

9.8e-61

90.41

Show/hide

Query:  MEDTVQELEKRWAEIQDKALKQPSPVQREKMLDKQLHSLIEQLAVKQAQAEGLASDIHLKEMELEKLNASSRRLQSSSSEAKIARNRFGRSMSDKNFSDH
        MEDTV+ELEK WAEIQDKALKQPSPVQREKMLDKQLHSL+EQLAVKQAQAEGLASDIHLKEMELEKL  SSRRLQSSSSEA IARNRFG+SMSDKNF D 
Subjt:  MEDTVQELEKRWAEIQDKALKQPSPVQREKMLDKQLHSLIEQLAVKQAQAEGLASDIHLKEMELEKLNASSRRLQSSSSEAKIARNRFGRSMSDKNFSDH

Query:  LADSHHKLPYRVGGRSENQQRLMILRSAFVLYILALHILVFIKISF
        LADSHH+LPYR GGRSENQQRLM+ RSAFV+YILALHILVFIKISF
Subjt:  LADSHHKLPYRVGGRSENQQRLMILRSAFVLYILALHILVFIKISF

A0A1S3CFI4 centromere protein F

4.3e-64

93.15

Show/hide

Query:  MEDTVQELEKRWAEIQDKALKQPSPVQREKMLDKQLHSLIEQLAVKQAQAEGLASDIHLKEMELEKLNASSRRLQSSSSEAKIARNRFGRSMSDKNFSDH
        MEDT++ELEK+WAEIQDKALKQPSPVQREKMLDKQLHSLIEQLAVKQAQAEGLASDIHLKEMELEKLNASSRRLQSSSSEA IARNRFGRSMSDKNF DH
Subjt:  MEDTVQELEKRWAEIQDKALKQPSPVQREKMLDKQLHSLIEQLAVKQAQAEGLASDIHLKEMELEKLNASSRRLQSSSSEAKIARNRFGRSMSDKNFSDH

Query:  LADSHHKLPYRVGGRSENQQRLMILRSAFVLYILALHILVFIKISF
        LA+SHHKLPYR GGRSENQQRLM+ RSAFV+YILALHILVFIKISF
Subjt:  LADSHHKLPYRVGGRSENQQRLMILRSAFVLYILALHILVFIKISF

A0A5A7T417 Centromere protein F

3.6e-63

91.78

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Query:  MEDTVQELEKRWAEIQDKALKQPSPVQREKMLDKQLHSLIEQLAVKQAQAEGLASDIHLKEMELEKLNASSRRLQSSSSEAKIARNRFGRSMSDKNFSDH
        MEDT++ELEK+WAEIQDKALKQPSPVQREKMLDKQLHSL+EQLAVKQAQAEGLASDIHL EMELEKLNASSRRLQSSSSEA IARNRFGRSMSDKNF DH
Subjt:  MEDTVQELEKRWAEIQDKALKQPSPVQREKMLDKQLHSLIEQLAVKQAQAEGLASDIHLKEMELEKLNASSRRLQSSSSEAKIARNRFGRSMSDKNFSDH

Query:  LADSHHKLPYRVGGRSENQQRLMILRSAFVLYILALHILVFIKISF
        LA+SHHKLPYR GGRSENQQRLM+ RSAFV+YILALHILVFIKISF
Subjt:  LADSHHKLPYRVGGRSENQQRLMILRSAFVLYILALHILVFIKISF

A0A6J1F4A5 uncharacterized protein PFB0145c

2.1e-63

92.47

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Query:  MEDTVQELEKRWAEIQDKALKQPSPVQREKMLDKQLHSLIEQLAVKQAQAEGLASDIHLKEMELEKLNASSRRLQSSSSEAKIARNRFGRSMSDKNFSDH
        MEDTV++LEKRWA++QDKALKQPSPVQR KMLDKQLHSL+EQLAVKQAQAEGLASDIHLKEMELEKLNASSRRLQSSSSEA IARNRFGRSMSDKNFSDH
Subjt:  MEDTVQELEKRWAEIQDKALKQPSPVQREKMLDKQLHSLIEQLAVKQAQAEGLASDIHLKEMELEKLNASSRRLQSSSSEAKIARNRFGRSMSDKNFSDH

Query:  LADSHHKLPYRVGGRSENQQRLMILRSAFVLYILALHILVFIKISF
        LADSHHKLPYR GGRS++QQRLM+LRSAFVLYILALHILVFIKISF
Subjt:  LADSHHKLPYRVGGRSENQQRLMILRSAFVLYILALHILVFIKISF

A0A6J1J7P1 rab11 family-interacting protein 3

3.6e-63

93.15

Show/hide

Query:  MEDTVQELEKRWAEIQDKALKQPSPVQREKMLDKQLHSLIEQLAVKQAQAEGLASDIHLKEMELEKLNASSRRLQSSSSEAKIARNRFGRSMSDKNFSDH
        MEDTV++LEKRWAEIQDKALKQPSPVQR KMLDKQLHSL+EQLAVKQAQAEGLASDIHLKEMELEKLNASSRRLQSSSSEA IARNRFGRSMSDKNF DH
Subjt:  MEDTVQELEKRWAEIQDKALKQPSPVQREKMLDKQLHSLIEQLAVKQAQAEGLASDIHLKEMELEKLNASSRRLQSSSSEAKIARNRFGRSMSDKNFSDH

Query:  LADSHHKLPYRVGGRSENQQRLMILRSAFVLYILALHILVFIKISF
        LADSHHKLPYR GGRSE+QQ+LM+LRSAFVLYILALHILVFIKISF
Subjt:  LADSHHKLPYRVGGRSENQQRLMILRSAFVLYILALHILVFIKISF

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G15880.1 unknown protein

6.5e-41

64.63

Show/hide

Query:  MEDTVQELEKRWAEIQDKALKQPSPVQREKMLDKQLHSLIEQLAVKQAQAEGLASDIHLKEMELEKLNASSRRLQSSSSEAKIARNRFGRSMSDKNF-SD
        ME+ VQ+LE+ WA IQ++ALKQPSP QREK LDKQLHSLIEQLA KQAQAEG+  +IHL EMELE+LN   RR +S + E   ARNRF R+ SD+ F SD
Subjt:  MEDTVQELEKRWAEIQDKALKQPSPVQREKMLDKQLHSLIEQLAVKQAQAEGLASDIHLKEMELEKLNASSRRLQSSSSEAKIARNRFGRSMSDKNF-SD

Query:  HLADSHHKLPYRVGGRSENQQRLMILRSAFVLYILALHILVFIKISF
        H  D H  LPY    R+  Q RLM LRSAFV+YILAL +LVFI+ISF
Subjt:  HLADSHHKLPYRVGGRSENQQRLMILRSAFVLYILALHILVFIKISF

Sequences

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CDS sequence

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ATGGAAGATACAGTTCAAGAGTTAGAAAAAAGGTGGGCAGAAATTCAGGATAAAGCTCTAAAACAGCCATCACCAGTTCAGAGAGAGAAAATGTTAGACAAACAACTCCA
TAGCCTCATCGAGCAACTAGCTGTAAAACAGGCACAAGCTGAAGGTTTGGCAAGTGATATTCATTTGAAGGAGATGGAACTGGAAAAACTAAATGCATCATCAAGGAGGC
TTCAAAGTAGCAGCTCTGAGGCTAAAATTGCTCGGAATCGTTTTGGAAGAAGCATGTCCGACAAGAATTTTTCAGACCATTTAGCTGACTCACACCACAAACTTCCTTAT
CGTGTTGGTGGTCGAAGTGAGAATCAACAGAGACTAATGATACTCCGATCTGCTTTCGTGCTCTACATTTTAGCTCTGCACATCTTGGTTTTCATCAAAATTTCATTCTG
A

mRNA sequence

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Protein sequence

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MEDTVQELEKRWAEIQDKALKQPSPVQREKMLDKQLHSLIEQLAVKQAQAEGLASDIHLKEMELEKLNASSRRLQSSSSEAKIARNRFGRSMSDKNFSDHLADSHHKLPY
RVGGRSENQQRLMILRSAFVLYILALHILVFIKISF

Lsi05G003940 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome