; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi05G003950 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G003950
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionCentromere protein F
Genome locationchr05:4983545..4985436
RNA-Seq ExpressionLsi05G003950
SyntenyLsi05G003950
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036129.1 centromere protein F [Cucumis melo var. makuwa]6.0e-6768.75Show/hide
Query:  MAGLLAWAADVVGGGGGANHDDEQTTSIPIIFTPEQQNYVRELNQKAASLSRSVRDLRLRLPPPDISQRLPHLHAHSLASTADLTLQLNAHSTTRQQVRL
        MAGLL+WAADVV GGGGANH+DE++TSIP+IFTPEQQNYVRELNQKAASLSRSVRDLRLRLPPPDISQRLPHLHAHSLASTADLTLQLNAHS+TR+QV+ 
Subjt:  MAGLLAWAADVVGGGGGANHDDEQTTSIPIIFTPEQQNYVRELNQKAASLSRSVRDLRLRLPPPDISQRLPHLHAHSLASTADLTLQLNAHSTTRQQVRL

Query:  LRFICAALLNVCYCPVPGSFQNCFIRWNLFLARFCIGSLFFKLTNNLVD-RELNEWYGSDCQELEETTQNLEVELEKAQAALENDESINFGKLTLKPSKV
        LR I     NV Y                       G       N + + R+  +      +ELEETT+NLEVELE  QAALENDES NFGKLT KPSKV
Subjt:  LRFICAALLNVCYCPVPGSFQNCFIRWNLFLARFCIGSLFFKLTNNLVD-RELNEWYGSDCQELEETTQNLEVELEKAQAALENDESINFGKLTLKPSKV

Query:  EAEQDVEVSKSALLEKLDIKKQEL
        EAEQD+E+SKSALLEKLDIKKQEL
Subjt:  EAEQDVEVSKSALLEKLDIKKQEL

KAG6581169.1 hypothetical protein SDJN03_21171, partial [Cucurbita argyrosperma subsp. sororia]3.0e-6670.85Show/hide
Query:  MAGLLAWAADVVGGGGGANHDDEQTTSIPIIFTPEQQNYVRELNQKAASLSRSVRDLRLRLPPPDISQRLPHLHAHSLASTADLTLQLNAHSTTRQQVRL
        MAGLLAWAADVV  GGGANHDDEQTTSIPIIFTPEQQ YVRELNQKAASLSRS+RDLRLRLPPPDISQRLPHLHAHSLASTADLTLQLNAHS+TR+QV+ 
Subjt:  MAGLLAWAADVVGGGGGANHDDEQTTSIPIIFTPEQQNYVRELNQKAASLSRSVRDLRLRLPPPDISQRLPHLHAHSLASTADLTLQLNAHSTTRQQVRL

Query:  LRFICAALLNVCYCPVPGSFQNCFIRWNLFLARFCIGSLFFKLTNNLVDRELNEWYGSDCQELEETTQNLEVELEKAQAALENDESINFGKLTLKPSKVE
        LR I     NV Y     + +N      +   R     L  KL                 +ELEETT+NLEVELE+AQAALE DESINFGKL  KPSKVE
Subjt:  LRFICAALLNVCYCPVPGSFQNCFIRWNLFLARFCIGSLFFKLTNNLVDRELNEWYGSDCQELEETTQNLEVELEKAQAALENDESINFGKLTLKPSKVE

Query:  AEQDVEVSKSALLEKLDIKKQEL
        AEQD+EVSKSALLEKL+IKKQEL
Subjt:  AEQDVEVSKSALLEKLDIKKQEL

XP_004145637.1 uncharacterized protein LOC101206785 [Cucumis sativus]1.0e-6668.89Show/hide
Query:  MAGLLAWAADVV-GGGGGANHDDEQTTSIPIIFTPEQQNYVRELNQKAASLSRSVRDLRLRLPPPDISQRLPHLHAHSLASTADLTLQLNAHSTTRQQVR
        MAGLL+WAADVV GGGGGANH+DE+TTSIP+IFTP+QQNYVRELNQKAASLSRSVRDLRLRLPPPDISQRLPHLHAHSLASTADLTLQLNAHS+TR+QV+
Subjt:  MAGLLAWAADVV-GGGGGANHDDEQTTSIPIIFTPEQQNYVRELNQKAASLSRSVRDLRLRLPPPDISQRLPHLHAHSLASTADLTLQLNAHSTTRQQVR

Query:  LLRFICAALLNVCYCPVPGSFQNCFIRWNLFLARFCIGSLFFKLTNNLVD-RELNEWYGSDCQELEETTQNLEVELEKAQAALENDESINFGKLTLKPSK
         LR I     NV Y                       G       N + + R+  +      +ELEETT+NLEVELE AQAALENDESINFGKLT KPSK
Subjt:  LLRFICAALLNVCYCPVPGSFQNCFIRWNLFLARFCIGSLFFKLTNNLVD-RELNEWYGSDCQELEETTQNLEVELEKAQAALENDESINFGKLTLKPSK

Query:  VEAEQDVEVSKSALLEKLDIKKQEL
        VEAEQD+E+SKSALL+KL+IKKQEL
Subjt:  VEAEQDVEVSKSALLEKLDIKKQEL

XP_022935341.1 uncharacterized protein PFB0145c [Cucurbita moschata]3.0e-6670.85Show/hide
Query:  MAGLLAWAADVVGGGGGANHDDEQTTSIPIIFTPEQQNYVRELNQKAASLSRSVRDLRLRLPPPDISQRLPHLHAHSLASTADLTLQLNAHSTTRQQVRL
        MAGLLAWAADVV  GGGANHDDEQTTSIPIIFTPEQQ YVRELNQKAASLSRS+RDLRLRLPPPDISQRLPHLHAHSLASTADLTLQLNAHS+TR+QV+ 
Subjt:  MAGLLAWAADVVGGGGGANHDDEQTTSIPIIFTPEQQNYVRELNQKAASLSRSVRDLRLRLPPPDISQRLPHLHAHSLASTADLTLQLNAHSTTRQQVRL

Query:  LRFICAALLNVCYCPVPGSFQNCFIRWNLFLARFCIGSLFFKLTNNLVDRELNEWYGSDCQELEETTQNLEVELEKAQAALENDESINFGKLTLKPSKVE
        LR I     NV Y     + +N      +   R     L  KL                 +ELEETT+NLEVELE+AQAALE DESINFGKL  KPSKVE
Subjt:  LRFICAALLNVCYCPVPGSFQNCFIRWNLFLARFCIGSLFFKLTNNLVDRELNEWYGSDCQELEETTQNLEVELEKAQAALENDESINFGKLTLKPSKVE

Query:  AEQDVEVSKSALLEKLDIKKQEL
        AEQD+EVSKSALLEKL+IKKQEL
Subjt:  AEQDVEVSKSALLEKLDIKKQEL

XP_038895964.1 golgin subfamily A member 1 [Benincasa hispida]5.8e-7071.68Show/hide
Query:  MAGLLAWAADVV--GGGGGANHDDEQTTSIPIIFTPEQQNYVRELNQKAASLSRSVRDLRLRLPPPDISQRLPHLHAHSLASTADLTLQLNAHSTTRQQV
        MAGLLAWAADVV  GGGGGANHDDEQ TSIPIIFTPEQQNYVRELNQKAASLSRSVRDLRLRLPPPDISQRLPHLHAHSLASTADLTLQLNAHS+TR+QV
Subjt:  MAGLLAWAADVV--GGGGGANHDDEQTTSIPIIFTPEQQNYVRELNQKAASLSRSVRDLRLRLPPPDISQRLPHLHAHSLASTADLTLQLNAHSTTRQQV

Query:  RLLRFICAALLNVCYCPVPGSFQNCFIRWNLFLARFCIGSLFFKLTNNLVD-RELNEWYGSDCQELEETTQNLEVELEKAQAALENDESINFGKLTLKPS
        + LR I     NV Y                       G       N + + R+  +   S  +ELEETT+NLE+ELEKAQAALENDESINFG+LT KPS
Subjt:  RLLRFICAALLNVCYCPVPGSFQNCFIRWNLFLARFCIGSLFFKLTNNLVD-RELNEWYGSDCQELEETTQNLEVELEKAQAALENDESINFGKLTLKPS

Query:  KVEAEQDVEVSKSALLEKLDIKKQEL
        KVEAEQD+EVSKSALLEKLDIKKQEL
Subjt:  KVEAEQDVEVSKSALLEKLDIKKQEL

TrEMBL top hitse value%identityAlignment
A0A0A0L9S6 Uncharacterized protein5.0e-6768.89Show/hide
Query:  MAGLLAWAADVV-GGGGGANHDDEQTTSIPIIFTPEQQNYVRELNQKAASLSRSVRDLRLRLPPPDISQRLPHLHAHSLASTADLTLQLNAHSTTRQQVR
        MAGLL+WAADVV GGGGGANH+DE+TTSIP+IFTP+QQNYVRELNQKAASLSRSVRDLRLRLPPPDISQRLPHLHAHSLASTADLTLQLNAHS+TR+QV+
Subjt:  MAGLLAWAADVV-GGGGGANHDDEQTTSIPIIFTPEQQNYVRELNQKAASLSRSVRDLRLRLPPPDISQRLPHLHAHSLASTADLTLQLNAHSTTRQQVR

Query:  LLRFICAALLNVCYCPVPGSFQNCFIRWNLFLARFCIGSLFFKLTNNLVD-RELNEWYGSDCQELEETTQNLEVELEKAQAALENDESINFGKLTLKPSK
         LR I     NV Y                       G       N + + R+  +      +ELEETT+NLEVELE AQAALENDESINFGKLT KPSK
Subjt:  LLRFICAALLNVCYCPVPGSFQNCFIRWNLFLARFCIGSLFFKLTNNLVD-RELNEWYGSDCQELEETTQNLEVELEKAQAALENDESINFGKLTLKPSK

Query:  VEAEQDVEVSKSALLEKLDIKKQEL
        VEAEQD+E+SKSALL+KL+IKKQEL
Subjt:  VEAEQDVEVSKSALLEKLDIKKQEL

A0A1S3CFI4 centromere protein F1.9e-6668.3Show/hide
Query:  MAGLLAWAADVVGGGGGANHDDEQTTSIPIIFTPEQQNYVRELNQKAASLSRSVRDLRLRLPPPDISQRLPHLHAHSLASTADLTLQLNAHSTTRQQVRL
        MAGLL+WAADVV GGGGANH+DE++TSIP+IFTPEQQNYVRELNQKAASLSRSVRDLRLRLPPPDISQRLPHLHAHSLASTADLTLQLNAHS+TR+QV+ 
Subjt:  MAGLLAWAADVVGGGGGANHDDEQTTSIPIIFTPEQQNYVRELNQKAASLSRSVRDLRLRLPPPDISQRLPHLHAHSLASTADLTLQLNAHSTTRQQVRL

Query:  LRFICAALLNVCYCPVPGSFQNCFIRWNLFLARFCIGSLFFKLTNNLVD-RELNEWYGSDCQELEETTQNLEVELEKAQAALENDESINFGKLTLKPSKV
        LR I     NV Y                       G       N + + R+  +      + LEETT+NLEVELE  QAALENDES NFGKLT KPSKV
Subjt:  LRFICAALLNVCYCPVPGSFQNCFIRWNLFLARFCIGSLFFKLTNNLVD-RELNEWYGSDCQELEETTQNLEVELEKAQAALENDESINFGKLTLKPSKV

Query:  EAEQDVEVSKSALLEKLDIKKQEL
        EAEQD+E+SKSALLEKLDIKKQEL
Subjt:  EAEQDVEVSKSALLEKLDIKKQEL

A0A5A7T417 Centromere protein F2.9e-6768.75Show/hide
Query:  MAGLLAWAADVVGGGGGANHDDEQTTSIPIIFTPEQQNYVRELNQKAASLSRSVRDLRLRLPPPDISQRLPHLHAHSLASTADLTLQLNAHSTTRQQVRL
        MAGLL+WAADVV GGGGANH+DE++TSIP+IFTPEQQNYVRELNQKAASLSRSVRDLRLRLPPPDISQRLPHLHAHSLASTADLTLQLNAHS+TR+QV+ 
Subjt:  MAGLLAWAADVVGGGGGANHDDEQTTSIPIIFTPEQQNYVRELNQKAASLSRSVRDLRLRLPPPDISQRLPHLHAHSLASTADLTLQLNAHSTTRQQVRL

Query:  LRFICAALLNVCYCPVPGSFQNCFIRWNLFLARFCIGSLFFKLTNNLVD-RELNEWYGSDCQELEETTQNLEVELEKAQAALENDESINFGKLTLKPSKV
        LR I     NV Y                       G       N + + R+  +      +ELEETT+NLEVELE  QAALENDES NFGKLT KPSKV
Subjt:  LRFICAALLNVCYCPVPGSFQNCFIRWNLFLARFCIGSLFFKLTNNLVD-RELNEWYGSDCQELEETTQNLEVELEKAQAALENDESINFGKLTLKPSKV

Query:  EAEQDVEVSKSALLEKLDIKKQEL
        EAEQD+E+SKSALLEKLDIKKQEL
Subjt:  EAEQDVEVSKSALLEKLDIKKQEL

A0A6J1F4A5 uncharacterized protein PFB0145c1.4e-6670.85Show/hide
Query:  MAGLLAWAADVVGGGGGANHDDEQTTSIPIIFTPEQQNYVRELNQKAASLSRSVRDLRLRLPPPDISQRLPHLHAHSLASTADLTLQLNAHSTTRQQVRL
        MAGLLAWAADVV  GGGANHDDEQTTSIPIIFTPEQQ YVRELNQKAASLSRS+RDLRLRLPPPDISQRLPHLHAHSLASTADLTLQLNAHS+TR+QV+ 
Subjt:  MAGLLAWAADVVGGGGGANHDDEQTTSIPIIFTPEQQNYVRELNQKAASLSRSVRDLRLRLPPPDISQRLPHLHAHSLASTADLTLQLNAHSTTRQQVRL

Query:  LRFICAALLNVCYCPVPGSFQNCFIRWNLFLARFCIGSLFFKLTNNLVDRELNEWYGSDCQELEETTQNLEVELEKAQAALENDESINFGKLTLKPSKVE
        LR I     NV Y     + +N      +   R     L  KL                 +ELEETT+NLEVELE+AQAALE DESINFGKL  KPSKVE
Subjt:  LRFICAALLNVCYCPVPGSFQNCFIRWNLFLARFCIGSLFFKLTNNLVDRELNEWYGSDCQELEETTQNLEVELEKAQAALENDESINFGKLTLKPSKVE

Query:  AEQDVEVSKSALLEKLDIKKQEL
        AEQD+EVSKSALLEKL+IKKQEL
Subjt:  AEQDVEVSKSALLEKLDIKKQEL

A0A6J1J7P1 rab11 family-interacting protein 33.6e-6567.41Show/hide
Query:  MAGLLAWAADVVGGGGGANHDDEQTTSIPIIFTPEQQNYVRELNQKAASLSRSVRDLRLRLPPPDISQRLPHLHAHSLASTADLTLQLNAHSTTRQQVRL
        MAGLLAWAADVV  GGGANHDDEQTTSIPIIFTPEQQ YVRELNQKAASLSRS+RDLRL+LPPPDISQRLPHLHAHSLASTADLTLQLNAHS+TR+QV+L
Subjt:  MAGLLAWAADVVGGGGGANHDDEQTTSIPIIFTPEQQNYVRELNQKAASLSRSVRDLRLRLPPPDISQRLPHLHAHSLASTADLTLQLNAHSTTRQQVRL

Query:  LRFICAALLNVCYCPVPGSFQNCFIRWNLFLARFCIGSLFFKLTNNLVD-RELNEWYGSDCQELEETTQNLEVELEKAQAALENDESINFGKLTLKPSKV
                                   +L    F  G       N + + R+  +      +ELEETT+NLEVELE+ QAALEND SINFGKL  KPSKV
Subjt:  LRFICAALLNVCYCPVPGSFQNCFIRWNLFLARFCIGSLFFKLTNNLVD-RELNEWYGSDCQELEETTQNLEVELEKAQAALENDESINFGKLTLKPSKV

Query:  EAEQDVEVSKSALLEKLDIKKQEL
        EAEQD+EVSKSALLEKL+IKKQEL
Subjt:  EAEQDVEVSKSALLEKLDIKKQEL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G15880.1 unknown protein3.6e-3342.86Show/hide
Query:  MAGLLAWAADVVGGGGGANHDDEQTTSIPIIFTPEQQNYVRELNQKAASLSRSVRDLRLRLPPPDISQRLPHLHAHSLASTADLTLQLNAHSTTRQQVRL
        MAGLLAWAADVVG  G     D++   IP++FT EQQ YV EL +KA +LSRS++DLRLRLPPPDISQRLP LHAHSLAS A LTLQL++HS TR+Q   
Subjt:  MAGLLAWAADVVGGGGGANHDDEQTTSIPIIFTPEQQNYVRELNQKAASLSRSVRDLRLRLPPPDISQRLPHLHAHSLASTADLTLQLNAHSTTRQQVRL

Query:  LRFICAALLNVCYCPVPGSFQNCFIRWNLFLARFCIGSLFFKLTNNLVDRELNEWYGSDCQELEETTQNLEVELEKAQAALENDESINFGKLTLKP-SKV
        +R       N  Y     +   C  +               +   N  D  L +      +ELE   +NL+ E + AQA+L+  +S +  +  ++P    
Subjt:  LRFICAALLNVCYCPVPGSFQNCFIRWNLFLARFCIGSLFFKLTNNLVDRELNEWYGSDCQELEETTQNLEVELEKAQAALENDESINFGKLTLKP-SKV

Query:  EAEQDVEVSKSALLEKLDIKKQEL
        +   D E  KS +LEKL+ KK ++
Subjt:  EAEQDVEVSKSALLEKLDIKKQEL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGGTTTGCTCGCATGGGCAGCGGACGTCGTCGGCGGAGGCGGCGGCGCGAACCACGACGACGAACAGACCACTTCGATTCCCATAATATTTACTCCGGAGCAGCA
GAATTACGTTCGAGAATTGAATCAGAAAGCAGCTTCTCTCAGCCGCTCGGTCCGCGATCTGCGCCTTCGATTGCCTCCTCCCGACATCTCCCAACGGCTTCCCCACCTTC
ATGCCCACTCCCTTGCCTCCACGGCCGATCTTACTCTTCAATTGAACGCCCACTCTACCACTCGCCAACAGGTTAGGCTTCTGCGATTCATTTGTGCTGCATTGTTGAAT
GTTTGTTATTGTCCTGTTCCGGGATCATTTCAAAATTGTTTCATTCGGTGGAATTTATTCTTAGCTCGATTTTGTATTGGATCCCTATTTTTCAAGTTAACAAATAATCT
GGTAGACCGTGAACTGAATGAGTGGTATGGTTCTGATTGCCAGGAGTTGGAAGAAACCACCCAGAATCTGGAAGTTGAGCTAGAAAAAGCACAGGCTGCTCTCGAAAATG
ATGAGTCCATCAACTTTGGAAAATTGACATTGAAACCTTCTAAAGTTGAAGCAGAACAAGATGTGGAAGTATCAAAGTCTGCCTTGCTAGAAAAATTAGATATCAAGAAA
CAAGAACTGGTCTGCTGCCTTATTTTGATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCGGTTTGCTCGCATGGGCAGCGGACGTCGTCGGCGGAGGCGGCGGCGCGAACCACGACGACGAACAGACCACTTCGATTCCCATAATATTTACTCCGGAGCAGCA
GAATTACGTTCGAGAATTGAATCAGAAAGCAGCTTCTCTCAGCCGCTCGGTCCGCGATCTGCGCCTTCGATTGCCTCCTCCCGACATCTCCCAACGGCTTCCCCACCTTC
ATGCCCACTCCCTTGCCTCCACGGCCGATCTTACTCTTCAATTGAACGCCCACTCTACCACTCGCCAACAGGTTAGGCTTCTGCGATTCATTTGTGCTGCATTGTTGAAT
GTTTGTTATTGTCCTGTTCCGGGATCATTTCAAAATTGTTTCATTCGGTGGAATTTATTCTTAGCTCGATTTTGTATTGGATCCCTATTTTTCAAGTTAACAAATAATCT
GGTAGACCGTGAACTGAATGAGTGGTATGGTTCTGATTGCCAGGAGTTGGAAGAAACCACCCAGAATCTGGAAGTTGAGCTAGAAAAAGCACAGGCTGCTCTCGAAAATG
ATGAGTCCATCAACTTTGGAAAATTGACATTGAAACCTTCTAAAGTTGAAGCAGAACAAGATGTGGAAGTATCAAAGTCTGCCTTGCTAGAAAAATTAGATATCAAGAAA
CAAGAACTGGTCTGCTGCCTTATTTTGATTTAA
Protein sequenceShow/hide protein sequence
MAGLLAWAADVVGGGGGANHDDEQTTSIPIIFTPEQQNYVRELNQKAASLSRSVRDLRLRLPPPDISQRLPHLHAHSLASTADLTLQLNAHSTTRQQVRLLRFICAALLN
VCYCPVPGSFQNCFIRWNLFLARFCIGSLFFKLTNNLVDRELNEWYGSDCQELEETTQNLEVELEKAQAALENDESINFGKLTLKPSKVEAEQDVEVSKSALLEKLDIKK
QELVCCLILI