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Lsi05G004380 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G004380
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionChalcone synthase protein
Genome locationchr05:5610869..5611243
RNA-Seq ExpressionLsi05G004380
SyntenyLsi05G004380
Gene Ontology termsGO:0006633 - fatty acid biosynthetic process (biological process)
GO:0030639 - polyketide biosynthetic process (biological process)
GO:0016747 - transferase activity, transferring acyl groups other than amino-acyl groups (molecular function)
InterPro domainsIPR011141 - Polyketide synthase, type III
IPR012328 - Chalcone/stilbene synthase, C-terminal
IPR016039 - Thiolase-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AGL76986.1 chalcone synthase protein, partial [Cucumis melo]8.1e-2588.06Show/hide
Query:  SEYGNMSSVCVLFIMDQMRKNSMQEGNSTTGEGLEWGVLFGFGLGITVETVVLHSVDIKETTLKAAS
        SEYGNMSS CVLFIMDQMRKNSM+EGNSTTGEGLEWGVLFGFG G+TVETVVLHSVDIKE+T+  AS
Subjt:  SEYGNMSSVCVLFIMDQMRKNSMQEGNSTTGEGLEWGVLFGFGLGITVETVVLHSVDIKETTLKAAS

KAA0048584.1 chalcone synthase 2 [Cucumis melo var. makuwa]8.1e-2588.06Show/hide
Query:  SEYGNMSSVCVLFIMDQMRKNSMQEGNSTTGEGLEWGVLFGFGLGITVETVVLHSVDIKETTLKAAS
        SEYGNMSS CVLFIMDQMRKNSM+EGNSTTGEGLEWGVLFGFG G+TVETVVLHSVDIKE+T+  AS
Subjt:  SEYGNMSSVCVLFIMDQMRKNSMQEGNSTTGEGLEWGVLFGFGLGITVETVVLHSVDIKETTLKAAS

XP_004145707.1 chalcone synthase 2 [Cucumis sativus]3.1e-2486.57Show/hide
Query:  SEYGNMSSVCVLFIMDQMRKNSMQEGNSTTGEGLEWGVLFGFGLGITVETVVLHSVDIKETTLKAAS
        SEYGNMSS CVLFIMDQMRKNSM+EGNSTTGEGLEWGVLFGFG G+TVETVVLHSV+IKE+T+  AS
Subjt:  SEYGNMSSVCVLFIMDQMRKNSMQEGNSTTGEGLEWGVLFGFGLGITVETVVLHSVDIKETTLKAAS

XP_008449984.1 PREDICTED: chalcone synthase 2 [Cucumis melo]8.1e-2588.06Show/hide
Query:  SEYGNMSSVCVLFIMDQMRKNSMQEGNSTTGEGLEWGVLFGFGLGITVETVVLHSVDIKETTLKAAS
        SEYGNMSS CVLFIMDQMRKNSM+EGNSTTGEGLEWGVLFGFG G+TVETVVLHSVDIKE+T+  AS
Subjt:  SEYGNMSSVCVLFIMDQMRKNSMQEGNSTTGEGLEWGVLFGFGLGITVETVVLHSVDIKETTLKAAS

XP_038892343.1 chalcone synthase 2 [Benincasa hispida]6.2e-2575Show/hide
Query:  GKIRSKGREDESNSE--SEYGNMSSVCVLFIMDQMRKNSMQEGNSTTGEGLEWGVLFGFGLGITVETVVLHSVDIKETTLKAAS
        GK+  K  +  +  E  SEYGNMSS CVLFIMDQMRKNS++EGNSTTGEGLEWGVLFGFG G+TVETVVLHS+DIKETTL+ AS
Subjt:  GKIRSKGREDESNSE--SEYGNMSSVCVLFIMDQMRKNSMQEGNSTTGEGLEWGVLFGFGLGITVETVVLHSVDIKETTLKAAS

TrEMBL top hitse value%identityAlignment
A0A0A0LDT8 Uncharacterized protein1.5e-2486.57Show/hide
Query:  SEYGNMSSVCVLFIMDQMRKNSMQEGNSTTGEGLEWGVLFGFGLGITVETVVLHSVDIKETTLKAAS
        SEYGNMSS CVLFIMDQMRKNSM+EGNSTTGEGLEWGVLFGFG G+TVETVVLHSV+IKE+T+  AS
Subjt:  SEYGNMSSVCVLFIMDQMRKNSMQEGNSTTGEGLEWGVLFGFGLGITVETVVLHSVDIKETTLKAAS

A0A1S3BNX6 chalcone synthase 23.9e-2588.06Show/hide
Query:  SEYGNMSSVCVLFIMDQMRKNSMQEGNSTTGEGLEWGVLFGFGLGITVETVVLHSVDIKETTLKAAS
        SEYGNMSS CVLFIMDQMRKNSM+EGNSTTGEGLEWGVLFGFG G+TVETVVLHSVDIKE+T+  AS
Subjt:  SEYGNMSSVCVLFIMDQMRKNSMQEGNSTTGEGLEWGVLFGFGLGITVETVVLHSVDIKETTLKAAS

A0A5A7TZX5 Chalcone synthase 23.9e-2588.06Show/hide
Query:  SEYGNMSSVCVLFIMDQMRKNSMQEGNSTTGEGLEWGVLFGFGLGITVETVVLHSVDIKETTLKAAS
        SEYGNMSS CVLFIMDQMRKNSM+EGNSTTGEGLEWGVLFGFG G+TVETVVLHSVDIKE+T+  AS
Subjt:  SEYGNMSSVCVLFIMDQMRKNSMQEGNSTTGEGLEWGVLFGFGLGITVETVVLHSVDIKETTLKAAS

D6PV09 Chalcone synthase1.5e-2485.07Show/hide
Query:  SEYGNMSSVCVLFIMDQMRKNSMQEGNSTTGEGLEWGVLFGFGLGITVETVVLHSVDIKETTLKAAS
        SEYGNMSS CVLFIMDQMRKNSM+EG +TTGEGLEWGVLFGFG G+TVETVVLHSV++KETT+KAA+
Subjt:  SEYGNMSSVCVLFIMDQMRKNSMQEGNSTTGEGLEWGVLFGFGLGITVETVVLHSVDIKETTLKAAS

R4QZR2 Chalcone synthase protein (Fragment)3.9e-2588.06Show/hide
Query:  SEYGNMSSVCVLFIMDQMRKNSMQEGNSTTGEGLEWGVLFGFGLGITVETVVLHSVDIKETTLKAAS
        SEYGNMSS CVLFIMDQMRKNSM+EGNSTTGEGLEWGVLFGFG G+TVETVVLHSVDIKE+T+  AS
Subjt:  SEYGNMSSVCVLFIMDQMRKNSMQEGNSTTGEGLEWGVLFGFGLGITVETVVLHSVDIKETTLKAAS

SwissProt top hitse value%identityAlignment
P06515 Chalcone synthase2.1e-2079.31Show/hide
Query:  SEYGNMSSVCVLFIMDQMRKNSMQEGNSTTGEGLEWGVLFGFGLGITVETVVLHSVDI
        SEYGNMSS CVLFI+D+MRK+S +EG STTGEGL+WGVLFGFG G+TVETVVLHSV +
Subjt:  SEYGNMSSVCVLFIMDQMRKNSMQEGNSTTGEGLEWGVLFGFGLGITVETVVLHSVDI

P26018 Chalcone synthase 12.1e-2077.59Show/hide
Query:  SEYGNMSSVCVLFIMDQMRKNSMQEGNSTTGEGLEWGVLFGFGLGITVETVVLHSVDI
        SEYGNMSS CVLFIMD+MRK S ++G++TTGEG++WGVLFGFG G+TVETVVLHSV I
Subjt:  SEYGNMSSVCVLFIMDQMRKNSMQEGNSTTGEGLEWGVLFGFGLGITVETVVLHSVDI

Q01286 Chalcone synthase 11.3e-2081.03Show/hide
Query:  SEYGNMSSVCVLFIMDQMRKNSMQEGNSTTGEGLEWGVLFGFGLGITVETVVLHSVDI
        SEYGNMSS CVLFI+DQMRK S Q+G +TTGEGLEWGVLFGFG G+T+ETVVLHSV I
Subjt:  SEYGNMSSVCVLFIMDQMRKNSMQEGNSTTGEGLEWGVLFGFGLGITVETVVLHSVDI

Q9FSB9 Chalcone synthase 12.8e-2077.97Show/hide
Query:  SEYGNMSSVCVLFIMDQMRKNSMQEGNSTTGEGLEWGVLFGFGLGITVETVVLHSVDIK
        SEYGNMSS CVLFI+D+MRKN  +EG +TTGEGL+WGVLFGFG G+TVETVVL SV IK
Subjt:  SEYGNMSSVCVLFIMDQMRKNSMQEGNSTTGEGLEWGVLFGFGLGITVETVVLHSVDIK

Q9XJ57 Chalcone synthase 22.1e-2065.33Show/hide
Query:  KIRSKGREDESNSE--SEYGNMSSVCVLFIMDQMRKNSMQEGNSTTGEGLEWGVLFGFGLGITVETVVLHSVDIK
        K+  KG + ++  +  SEYGNMSS CVLFI+D+MRK S++E  +TTGEGL+WGVLFGFG G+TVETVVLHSV IK
Subjt:  KIRSKGREDESNSE--SEYGNMSSVCVLFIMDQMRKNSMQEGNSTTGEGLEWGVLFGFGLGITVETVVLHSVDIK

Arabidopsis top hitse value%identityAlignment
AT1G02050.1 Chalcone and stilbene synthase family protein1.3e-0431.43Show/hide
Query:  KIRSKGREDESNSESEYGNMSSVCVLFIMDQMRKNSMQEGNSTTGEGLEWGVLFGFGLGITVETVVLHSV
        K+  +  E    +  +YGN+SS  +L++M+ MR    ++G++      EWG+   FG GIT E +++ S+
Subjt:  KIRSKGREDESNSESEYGNMSSVCVLFIMDQMRKNSMQEGNSTTGEGLEWGVLFGFGLGITVETVVLHSV

AT4G00040.1 Chalcone and stilbene synthase family protein2.2e-0432.86Show/hide
Query:  KIRSKGREDESNSESEYGNMSSVCVLFIMDQMRKNSMQEGNSTTGEGLEWGVLFGFGLGITVETVVLHSV
        K++ +  E    +  +YGN+SS  + +IMD++R    ++G     EG EWG+   FG GIT E  ++ ++
Subjt:  KIRSKGREDESNSESEYGNMSSVCVLFIMDQMRKNSMQEGNSTTGEGLEWGVLFGFGLGITVETVVLHSV

AT4G34850.1 Chalcone and stilbene synthase family protein7.6e-0531.58Show/hide
Query:  EYGNMSSVCVLFIMDQMRKNSMQEGNSTTGEGLEWGVLFGFGLGITVETVVLHSVDI
        +YGN SS  ++++++ M + S +  N    E  EWG++  FG G+T E ++  ++D+
Subjt:  EYGNMSSVCVLFIMDQMRKNSMQEGNSTTGEGLEWGVLFGFGLGITVETVVLHSVDI

AT5G13930.1 Chalcone and stilbene synthase family protein1.3e-2075.86Show/hide
Query:  SEYGNMSSVCVLFIMDQMRKNSMQEGNSTTGEGLEWGVLFGFGLGITVETVVLHSVDI
        SEYGNMSS CVLFI+D+MR+ S ++G +TTGEGLEWGVLFGFG G+TVETVVLHSV +
Subjt:  SEYGNMSSVCVLFIMDQMRKNSMQEGNSTTGEGLEWGVLFGFGLGITVETVVLHSVDI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGGAGGCAAAATTAGGTCTAAAGGAAGAGAAGATGAGAGCAACTCTGAGAGCGAGTATGGTAACATGTCGAGCGTGTGCGTGTTGTTTATAATGGATCAAATGAG
GAAGAACTCTATGCAGGAAGGAAATTCGACAACCGGAGAAGGGCTCGAATGGGGAGTTTTGTTTGGGTTCGGGCTAGGGATAACGGTGGAGACCGTGGTGCTACATAGTG
TTGACATAAAGGAAACCACCTTGAAAGCTGCCTCTCTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGTGGAGGCAAAATTAGGTCTAAAGGAAGAGAAGATGAGAGCAACTCTGAGAGCGAGTATGGTAACATGTCGAGCGTGTGCGTGTTGTTTATAATGGATCAAATGAG
GAAGAACTCTATGCAGGAAGGAAATTCGACAACCGGAGAAGGGCTCGAATGGGGAGTTTTGTTTGGGTTCGGGCTAGGGATAACGGTGGAGACCGTGGTGCTACATAGTG
TTGACATAAAGGAAACCACCTTGAAAGCTGCCTCTCTTTAA
Protein sequenceShow/hide protein sequence
MSGGKIRSKGREDESNSESEYGNMSSVCVLFIMDQMRKNSMQEGNSTTGEGLEWGVLFGFGLGITVETVVLHSVDIKETTLKAASL