; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi05G004480 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G004480
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionlight-regulated protein-like
Genome locationchr05:5733454..5739450
RNA-Seq ExpressionLsi05G004480
SyntenyLsi05G004480
Gene Ontology termsGO:0009507 - chloroplast (cellular component)
InterPro domainsIPR009856 - Light regulated Lir1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ACV88397.1 GA-like protein, partial [Cucumis sativus]1.9e-2348.07Show/hide
Query:  VLSIALPSLLP-STLSNNNPSHFPLISFRSSHSSGRSAIKATASVVYDASVVDYSSAISGDLEFGSVCNFIELDIIYNGAFGQKYLGKIEKYLQGDGKAV
        VLSIA+PSLLP STLS+N PSHFPLI+F SSHSS RS+IKATASVVYD SVVDYSSAIS  +     C  I          G +  G    + +      
Subjt:  VLSIALPSLLP-STLSNNNPSHFPLISFRSSHSSGRSAIKATASVVYDASVVDYSSAISGDLEFGSVCNFIELDIIYNGAFGQKYLGKIEKYLQGDGKAV

Query:  LSIALPSLLPSTLSNNNPSHFPLISFRSSHSSGRSAIKATASVVYDASVVDYSSAISVFPGEACDDLGGEFCEPEFLNGVF
               L  ++L+N NP                      +S   D   +DY+ + +VFPGEACDDLGGEFCEPEFLNGVF
Subjt:  LSIALPSLLPSTLSNNNPSHFPLISFRSSHSSGRSAIKATASVVYDASVVDYSSAISVFPGEACDDLGGEFCEPEFLNGVF

KAA0066931.1 light-regulated protein isoform X2 [Cucumis melo var. makuwa]5.5e-1845.41Show/hide
Query:  AVLSIALPSLLP-STLSNNNPSHFPLISFRSSHSSGRSAIKATASVVYDASVVDYSSAISGDLEFGSVCNFIELDIIYNGAFGQKYLGKIEKYLQGDGKA
        AVLSIA+PSLLP STLSN++ SHFP I+F  S+SS RSAIKATASVVYD SVVDYSSAIS  +     C  I                       G    
Subjt:  AVLSIALPSLLP-STLSNNNPSHFPLISFRSSHSSGRSAIKATASVVYDASVVDYSSAISGDLEFGSVCNFIELDIIYNGAFGQKYLGKIEKYLQGDGKA

Query:  VLSIALPS--LLPSTLSNNNPSHFPLISFRSSHSSGRSAIKATASVVYDASVVDYSS-AISVFPGEACDDLGGEFCEPEFLNGVF
          +   P   L PS  +N NP+   L                      D   +DY++ + +VF GEACDDLGGEFCE EFLNGVF
Subjt:  VLSIALPS--LLPSTLSNNNPSHFPLISFRSSHSSGRSAIKATASVVYDASVVDYSS-AISVFPGEACDDLGGEFCEPEFLNGVF

KAE8650797.1 hypothetical protein Csa_017474 [Cucumis sativus]1.3e-2448.63Show/hide
Query:  QAVLSIALPSLLP-STLSNNNPSHFPLISFRSSHSSGRSAIKATASVVYDASVVDYSSAISGDLEFGSVCNFIELDIIYNGAFGQKYLGKIEKYLQGDGK
        QAVLSIA+PSLLP STLS+N PSHFPLI+F SSHSS RS+IKATASVVYD SVVDYSSAIS  +     C  I          G +  G    + +    
Subjt:  QAVLSIALPSLLP-STLSNNNPSHFPLISFRSSHSSGRSAIKATASVVYDASVVDYSSAISGDLEFGSVCNFIELDIIYNGAFGQKYLGKIEKYLQGDGK

Query:  AVLSIALPSLLPSTLSNNNPSHFPLISFRSSHSSGRSAIKATASVVYDASVVDYSSAISVFPGEACDDLGGEFCEPEFLNGVF
                 L  ++L+N NP                      +S   D   +DY+ + +VFPGEACDDLGGEFCEPEFLNGVF
Subjt:  AVLSIALPSLLPSTLSNNNPSHFPLISFRSSHSSGRSAIKATASVVYDASVVDYSSAISVFPGEACDDLGGEFCEPEFLNGVF

XP_004145699.2 light-regulated protein, chloroplastic [Cucumis sativus]1.3e-2448.63Show/hide
Query:  QAVLSIALPSLLP-STLSNNNPSHFPLISFRSSHSSGRSAIKATASVVYDASVVDYSSAISGDLEFGSVCNFIELDIIYNGAFGQKYLGKIEKYLQGDGK
        QAVLSIA+PSLLP STLS+N PSHFPLI+F SSHSS RS+IKATASVVYD SVVDYSSAIS  +     C  I          G +  G    + +    
Subjt:  QAVLSIALPSLLP-STLSNNNPSHFPLISFRSSHSSGRSAIKATASVVYDASVVDYSSAISGDLEFGSVCNFIELDIIYNGAFGQKYLGKIEKYLQGDGK

Query:  AVLSIALPSLLPSTLSNNNPSHFPLISFRSSHSSGRSAIKATASVVYDASVVDYSSAISVFPGEACDDLGGEFCEPEFLNGVF
                 L  ++L+N NP                      +S   D   +DY+ + +VFPGEACDDLGGEFCEPEFLNGVF
Subjt:  AVLSIALPSLLPSTLSNNNPSHFPLISFRSSHSSGRSAIKATASVVYDASVVDYSSAISVFPGEACDDLGGEFCEPEFLNGVF

XP_038893926.1 light-regulated protein, chloroplastic-like [Benincasa hispida]1.6e-2548.63Show/hide
Query:  QAVLSIALPSLLPSTLSNNNPSHFPLISFRSSHSSGRSAIKATASVVYDASVVDYSSAISGDLEFGSVCNFIELDIIYNGAFGQKYLGKIEKYLQGDGKA
        QAVLSIA+P LLPSTLSNNNPS FPLISF SSH S RSAIKATASVVYDAS+VDYSSAIS  +     C  I                         G+A
Subjt:  QAVLSIALPSLLPSTLSNNNPSHFPLISFRSSHSSGRSAIKATASVVYDASVVDYSSAISGDLEFGSVCNFIELDIIYNGAFGQKYLGKIEKYLQGDGKA

Query:  VLSIALPSL-LPSTLSNNNPSHFPLISFRSSHSSGRSAIKATASVVYDASVVDYSSAISVFPGEACDDLGGEFCEPEFLNGVF
          +   P + +  +L+N  P                    A A    D   +DY+ + +VFPGEACDDLGGEFCEPEFLN VF
Subjt:  VLSIALPSL-LPSTLSNNNPSHFPLISFRSSHSSGRSAIKATASVVYDASVVDYSSAISVFPGEACDDLGGEFCEPEFLNGVF

TrEMBL top hitse value%identityAlignment
A0A0A0L8G9 Uncharacterized protein6.5e-2548.63Show/hide
Query:  QAVLSIALPSLLP-STLSNNNPSHFPLISFRSSHSSGRSAIKATASVVYDASVVDYSSAISGDLEFGSVCNFIELDIIYNGAFGQKYLGKIEKYLQGDGK
        QAVLSIA+PSLLP STLS+N PSHFPLI+F SSHSS RS+IKATASVVYD SVVDYSSAIS  +     C  I          G +  G    + +    
Subjt:  QAVLSIALPSLLP-STLSNNNPSHFPLISFRSSHSSGRSAIKATASVVYDASVVDYSSAISGDLEFGSVCNFIELDIIYNGAFGQKYLGKIEKYLQGDGK

Query:  AVLSIALPSLLPSTLSNNNPSHFPLISFRSSHSSGRSAIKATASVVYDASVVDYSSAISVFPGEACDDLGGEFCEPEFLNGVF
                 L  ++L+N NP                      +S   D   +DY+ + +VFPGEACDDLGGEFCEPEFLNGVF
Subjt:  AVLSIALPSLLPSTLSNNNPSHFPLISFRSSHSSGRSAIKATASVVYDASVVDYSSAISVFPGEACDDLGGEFCEPEFLNGVF

A0A1S3BND3 light-regulated protein isoform X21.7e-1744.86Show/hide
Query:  AVLSIALPSLLP-STLSNNNPSHFPLISFRSSHSSGRSAIKATASVVYDASVVDYSSAISGDLEFGSVCNFIELDIIYNGAFGQKYLGKIEKYLQGDGKA
        AVLSIA+PSLLP STLSN++ SHFP I+F  S+SS  SAIKATASVVYD SVVDYSSAIS  +     C  I                       G    
Subjt:  AVLSIALPSLLP-STLSNNNPSHFPLISFRSSHSSGRSAIKATASVVYDASVVDYSSAISGDLEFGSVCNFIELDIIYNGAFGQKYLGKIEKYLQGDGKA

Query:  VLSIALPS--LLPSTLSNNNPSHFPLISFRSSHSSGRSAIKATASVVYDASVVDYSS-AISVFPGEACDDLGGEFCEPEFLNGVF
          +   P   L PS  +N NP+   L                      D   +DY++ + +VF GEACDDLGGEFCE EFLNGVF
Subjt:  VLSIALPS--LLPSTLSNNNPSHFPLISFRSSHSSGRSAIKATASVVYDASVVDYSS-AISVFPGEACDDLGGEFCEPEFLNGVF

A0A1S4DXW1 light-regulated protein isoform X31.7e-1744.86Show/hide
Query:  AVLSIALPSLLP-STLSNNNPSHFPLISFRSSHSSGRSAIKATASVVYDASVVDYSSAISGDLEFGSVCNFIELDIIYNGAFGQKYLGKIEKYLQGDGKA
        AVLSIA+PSLLP STLSN++ SHFP I+F  S+SS  SAIKATASVVYD SVVDYSSAIS  +     C  I                       G    
Subjt:  AVLSIALPSLLP-STLSNNNPSHFPLISFRSSHSSGRSAIKATASVVYDASVVDYSSAISGDLEFGSVCNFIELDIIYNGAFGQKYLGKIEKYLQGDGKA

Query:  VLSIALPS--LLPSTLSNNNPSHFPLISFRSSHSSGRSAIKATASVVYDASVVDYSS-AISVFPGEACDDLGGEFCEPEFLNGVF
          +   P   L PS  +N NP+   L                      D   +DY++ + +VF GEACDDLGGEFCE EFLNGVF
Subjt:  VLSIALPS--LLPSTLSNNNPSHFPLISFRSSHSSGRSAIKATASVVYDASVVDYSS-AISVFPGEACDDLGGEFCEPEFLNGVF

A0A5A7VMP8 Light-regulated protein isoform X22.6e-1845.41Show/hide
Query:  AVLSIALPSLLP-STLSNNNPSHFPLISFRSSHSSGRSAIKATASVVYDASVVDYSSAISGDLEFGSVCNFIELDIIYNGAFGQKYLGKIEKYLQGDGKA
        AVLSIA+PSLLP STLSN++ SHFP I+F  S+SS RSAIKATASVVYD SVVDYSSAIS  +     C  I                       G    
Subjt:  AVLSIALPSLLP-STLSNNNPSHFPLISFRSSHSSGRSAIKATASVVYDASVVDYSSAISGDLEFGSVCNFIELDIIYNGAFGQKYLGKIEKYLQGDGKA

Query:  VLSIALPS--LLPSTLSNNNPSHFPLISFRSSHSSGRSAIKATASVVYDASVVDYSS-AISVFPGEACDDLGGEFCEPEFLNGVF
          +   P   L PS  +N NP+   L                      D   +DY++ + +VF GEACDDLGGEFCE EFLNGVF
Subjt:  VLSIALPS--LLPSTLSNNNPSHFPLISFRSSHSSGRSAIKATASVVYDASVVDYSS-AISVFPGEACDDLGGEFCEPEFLNGVF

C9E9F1 GA-like protein (Fragment)9.4e-2448.07Show/hide
Query:  VLSIALPSLLP-STLSNNNPSHFPLISFRSSHSSGRSAIKATASVVYDASVVDYSSAISGDLEFGSVCNFIELDIIYNGAFGQKYLGKIEKYLQGDGKAV
        VLSIA+PSLLP STLS+N PSHFPLI+F SSHSS RS+IKATASVVYD SVVDYSSAIS  +     C  I          G +  G    + +      
Subjt:  VLSIALPSLLP-STLSNNNPSHFPLISFRSSHSSGRSAIKATASVVYDASVVDYSSAISGDLEFGSVCNFIELDIIYNGAFGQKYLGKIEKYLQGDGKAV

Query:  LSIALPSLLPSTLSNNNPSHFPLISFRSSHSSGRSAIKATASVVYDASVVDYSSAISVFPGEACDDLGGEFCEPEFLNGVF
               L  ++L+N NP                      +S   D   +DY+ + +VFPGEACDDLGGEFCEPEFLNGVF
Subjt:  LSIALPSLLPSTLSNNNPSHFPLISFRSSHSSGRSAIKATASVVYDASVVDYSSAISVFPGEACDDLGGEFCEPEFLNGVF

SwissProt top hitse value%identityAlignment
Q96500 Light-regulated protein 1, chloroplastic7.9e-0453.85Show/hide
Query:  KATASVVYDASVVDYSSAISVFPGEACDDLGGEFCEPEF
        +  AS   D    +Y+S  +VF  EACDDLGGEFCEP+F
Subjt:  KATASVVYDASVVDYSSAISVFPGEACDDLGGEFCEPEF

Arabidopsis top hitse value%identityAlignment
AT3G26740.1 CCR-like5.6e-0553.85Show/hide
Query:  KATASVVYDASVVDYSSAISVFPGEACDDLGGEFCEPEF
        +  AS   D    +Y+S  +VF  EACDDLGGEFCEP+F
Subjt:  KATASVVYDASVVDYSSAISVFPGEACDDLGGEFCEPEF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCGTCTCGCAGGCTGTTCTTAGCATTGCTCTTCCTTCCCTTCTCCCCTCAACACTTTCCAATAATAACCCTTCTCACTTTCCTTTGATCTCATTTCGTTCGTCTCA
CTCCTCGGGTCGCTCGGCCATCAAAGCAACCGCCTCCGTCGTCTACGACGCATCGGTGGTTGATTATAGTTCTGCTATCTCTGGGGACTTGGAATTTGGCAGTGTATGTA
ACTTTATTGAGTTAGACATCATATATAATGGGGCCTTTGGGCAAAAATATCTTGGGAAGATTGAGAAATATCTCCAAGGTGATGGGAAAGCTGTTCTTAGCATTGCTCTT
CCTTCCCTTCTCCCCTCAACACTTTCCAATAATAACCCTTCTCACTTTCCTTTGATCTCATTTCGTTCGTCTCACTCCTCGGGTCGCTCGGCCATCAAAGCAACCGCCTC
CGTCGTCTACGACGCATCGGTGGTTGATTATAGTTCTGCTATCTCTGTTTTCCCAGGAGAGGCTTGCGATGATCTTGGTGGAGAATTCTGTGAACCCGAGTTTCTAAACG
GCGTTTTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGCGTCTCGCAGGCTGTTCTTAGCATTGCTCTTCCTTCCCTTCTCCCCTCAACACTTTCCAATAATAACCCTTCTCACTTTCCTTTGATCTCATTTCGTTCGTCTCA
CTCCTCGGGTCGCTCGGCCATCAAAGCAACCGCCTCCGTCGTCTACGACGCATCGGTGGTTGATTATAGTTCTGCTATCTCTGGGGACTTGGAATTTGGCAGTGTATGTA
ACTTTATTGAGTTAGACATCATATATAATGGGGCCTTTGGGCAAAAATATCTTGGGAAGATTGAGAAATATCTCCAAGGTGATGGGAAAGCTGTTCTTAGCATTGCTCTT
CCTTCCCTTCTCCCCTCAACACTTTCCAATAATAACCCTTCTCACTTTCCTTTGATCTCATTTCGTTCGTCTCACTCCTCGGGTCGCTCGGCCATCAAAGCAACCGCCTC
CGTCGTCTACGACGCATCGGTGGTTGATTATAGTTCTGCTATCTCTGTTTTCCCAGGAGAGGCTTGCGATGATCTTGGTGGAGAATTCTGTGAACCCGAGTTTCTAAACG
GCGTTTTCTAGTTCTGTGAACCCGAGTTTCTAAATGACGTTTTCTAGTGTATTTCTATTTACAAAAAAGGCTCTTAGTCTATAGCCCCATATCATACATTCTGTAACTGT
AACCCACTTTTCACCATTCTCAACGC
Protein sequenceShow/hide protein sequence
MSVSQAVLSIALPSLLPSTLSNNNPSHFPLISFRSSHSSGRSAIKATASVVYDASVVDYSSAISGDLEFGSVCNFIELDIIYNGAFGQKYLGKIEKYLQGDGKAVLSIAL
PSLLPSTLSNNNPSHFPLISFRSSHSSGRSAIKATASVVYDASVVDYSSAISVFPGEACDDLGGEFCEPEFLNGVF