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Lsi05G004540 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G004540
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionBasic helix-loop-helix (bHLH) DNA-binding family protein
Genome locationchr05:5809879..5810301
RNA-Seq ExpressionLsi05G004540
SyntenyLsi05G004540
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0010629 - negative regulation of gene expression (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR045084 - Transcription factor AIB/MYC-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB2003125.1 hypothetical protein ES319_D11G109700v1 [Gossypium barbadense]2.6e-0869.64Show/hide
Query:  REKLNHRFSFLRSVVLNVSRMDKASLLFDVVLHINDLQMKISELESQVPKKKKKKK
        REKLNHRF  LR+VV NVSRMDKASLL D V +INDL+ KI ELESQ+ +++KK K
Subjt:  REKLNHRFSFLRSVVLNVSRMDKASLLFDVVLHINDLQMKISELESQVPKKKKKKK

XP_008441948.1 PREDICTED: transcription factor MYC3-like [Cucumis melo]2.0e-1668.54Show/hide
Query:  REKLNHRFSFLRSVVLNVSRMDKASLLFDVVLHINDLQMKISELESQVPKKKKKKKGFE-EMEEEATSRDQRERVNKIYVKIIGEDQAM
        REKLN RF+ LR VV NVSRMDKASLL D V +IN+L+MKISE+ES+V KKKKK    E EMEEEA+SRD+RER  +I VKIIG D+A+
Subjt:  REKLNHRFSFLRSVVLNVSRMDKASLLFDVVLHINDLQMKISELESQVPKKKKKKKGFE-EMEEEATSRDQRERVNKIYVKIIGEDQAM

XP_009766909.1 PREDICTED: transcription factor MYC2 [Nicotiana sylvestris]6.8e-0953.76Show/hide
Query:  REKLNHRFSFLRSVVLNVSRMDKASLLFDVVLHINDLQMKISELESQV-----PKKKKKKKGFEEMEEEATSRDQRERVN---KIYVKIIGED
        REKLNHRF  LRSVV NVSRMDKASLL D V +IN L+ K+ ELESQ+       KK+K     E +   TS DQ  R N   ++ VKI+G D
Subjt:  REKLNHRFSFLRSVVLNVSRMDKASLLFDVVLHINDLQMKISELESQV-----PKKKKKKKGFEEMEEEATSRDQRERVN---KIYVKIIGED

XP_031736394.1 transcription factor bHLH14-like [Cucumis sativus]6.8e-1767.03Show/hide
Query:  REKLNHRFSFLRSVVLNVSRMDKASLLFDVVLHINDLQMKISELESQVPKKKKKKKG---FEEMEEEATSRDQRERVNKIYVKIIGEDQAM
        REKLN RF+ LRSVV NVSRMDKASLL D V +IN+L+MKISE+ES+V K+KK+KK      EMEEEA+SRD+RER  +I VKIIG D+A+
Subjt:  REKLNHRFSFLRSVVLNVSRMDKASLLFDVVLHINDLQMKISELESQVPKKKKKKKG---FEEMEEEATSRDQRERVNKIYVKIIGEDQAM

XP_038890552.1 transcription factor MYC3-like [Benincasa hispida]6.1e-1868.18Show/hide
Query:  REKLNHRFSFLRSVVLNVSRMDKASLLFDVVLHINDLQMKISELESQVPKKKKKKKGFEEMEEEATSRDQRERVNKIYVKIIGEDQAM
        REKLNHRF+ LRSVV +VSRMDKASLL + + +IN+LQ KISE+ES+V     KKKG EEMEEEA+SRD+RE+V +I VKIIG DQA+
Subjt:  REKLNHRFSFLRSVVLNVSRMDKASLLFDVVLHINDLQMKISELESQVPKKKKKKKGFEEMEEEATSRDQRERVNKIYVKIIGEDQAM

TrEMBL top hitse value%identityAlignment
A0A0A0LKN8 BHLH domain-containing protein3.3e-1767.03Show/hide
Query:  REKLNHRFSFLRSVVLNVSRMDKASLLFDVVLHINDLQMKISELESQVPKKKKKKKG---FEEMEEEATSRDQRERVNKIYVKIIGEDQAM
        REKLN RF+ LRSVV NVSRMDKASLL D V +IN+L+MKISE+ES+V K+KK+KK      EMEEEA+SRD+RER  +I VKIIG D+A+
Subjt:  REKLNHRFSFLRSVVLNVSRMDKASLLFDVVLHINDLQMKISELESQVPKKKKKKKG---FEEMEEEATSRDQRERVNKIYVKIIGEDQAM

A0A1S3B4K7 transcription factor MYC3-like9.6e-1768.54Show/hide
Query:  REKLNHRFSFLRSVVLNVSRMDKASLLFDVVLHINDLQMKISELESQVPKKKKKKKGFE-EMEEEATSRDQRERVNKIYVKIIGEDQAM
        REKLN RF+ LR VV NVSRMDKASLL D V +IN+L+MKISE+ES+V KKKKK    E EMEEEA+SRD+RER  +I VKIIG D+A+
Subjt:  REKLNHRFSFLRSVVLNVSRMDKASLLFDVVLHINDLQMKISELESQVPKKKKKKKGFE-EMEEEATSRDQRERVNKIYVKIIGEDQAM

A0A1U7VWY5 transcription factor MYC23.3e-0953.76Show/hide
Query:  REKLNHRFSFLRSVVLNVSRMDKASLLFDVVLHINDLQMKISELESQV-----PKKKKKKKGFEEMEEEATSRDQRERVN---KIYVKIIGED
        REKLNHRF  LRSVV NVSRMDKASLL D V +IN L+ K+ ELESQ+       KK+K     E +   TS DQ  R N   ++ VKI+G D
Subjt:  REKLNHRFSFLRSVVLNVSRMDKASLLFDVVLHINDLQMKISELESQV-----PKKKKKKKGFEEMEEEATSRDQRERVN---KIYVKIIGED

A0A5A7V6X0 Transcription factor MYC3-like9.6e-1768.54Show/hide
Query:  REKLNHRFSFLRSVVLNVSRMDKASLLFDVVLHINDLQMKISELESQVPKKKKKKKGFE-EMEEEATSRDQRERVNKIYVKIIGEDQAM
        REKLN RF+ LR VV NVSRMDKASLL D V +IN+L+MKISE+ES+V KKKKK    E EMEEEA+SRD+RER  +I VKIIG D+A+
Subjt:  REKLNHRFSFLRSVVLNVSRMDKASLLFDVVLHINDLQMKISELESQVPKKKKKKKGFE-EMEEEATSRDQRERVNKIYVKIIGEDQAM

A0A5D2IMN0 BHLH domain-containing protein1.3e-0869.64Show/hide
Query:  REKLNHRFSFLRSVVLNVSRMDKASLLFDVVLHINDLQMKISELESQVPKKKKKKK
        REKLNHRF  LR+VV NVSRMDKASLL D V +INDL+ KI ELESQ+ +++KK K
Subjt:  REKLNHRFSFLRSVVLNVSRMDKASLLFDVVLHINDLQMKISELESQVPKKKKKKK

SwissProt top hitse value%identityAlignment
A0A3Q7ELQ2 Transcription factor MTB14.3e-0646.38Show/hide
Query:  REKLNHRFSFLRSVVLNVSRMDKASLLFDVVLHINDLQMKISELESQVPKKKKKKKGFEEMEEEATSRD
        REKLN RF  LR+VV N+S+MDKASLL D + +I +LQ K+ ++ES+            E+   +TSRD
Subjt:  REKLNHRFSFLRSVVLNVSRMDKASLLFDVVLHINDLQMKISELESQVPKKKKKKKGFEEMEEEATSRD

A0A3Q7HES4 Transcription factor MTB23.3e-0646.27Show/hide
Query:  REKLNHRFSFLRSVVLNVSRMDKASLLFDVVLHINDLQMKISELESQVPKKKKKKKGFEEMEEEATS
        REKLN RF  LR+VV N+S+MDKASLL D + HI D+Q +I + E ++ K+        ++  EA S
Subjt:  REKLNHRFSFLRSVVLNVSRMDKASLLFDVVLHINDLQMKISELESQVPKKKKKKKGFEEMEEEATS

O23090 Transcription factor bHLH142.3e-0739.8Show/hide
Query:  REKLNHRFSFLRSVVLNVSRMDKASLLFDVVLHINDLQMKISELESQVPKKKKKK-------------KGFEEMEEEATSRDQRERVNKIYVKIIGED
        REKLNHRF  LR++V  VSRMDKASLL D V +I  L+ KI +LE+++ K K  +                E    +  S+  R    ++ VKI+GE+
Subjt:  REKLNHRFSFLRSVVLNVSRMDKASLLFDVVLHINDLQMKISELESQVPKKKKKK-------------KGFEEMEEEATSRDQRERVNKIYVKIIGED

Q39204 Transcription factor MYC24.3e-0650Show/hide
Query:  REKLNHRFSFLRSVVLNVSRMDKASLLFDVVLHINDLQMKISELESQVPKKKKKKKGFEEMEEEATSR
        REKLN RF  LR+VV NVS+MDKASLL D + +IN+L+ K+ + ES+   K + K   EE++ E   R
Subjt:  REKLNHRFSFLRSVVLNVSRMDKASLLFDVVLHINDLQMKISELESQVPKKKKKKKGFEEMEEEATSR

Q9LUK7 Transcription factor bHLH288.6e-0742.86Show/hide
Query:  REKLNHRFSFLRSVVLNVSRMDKASLLFDVVLHINDLQMKISELESQVPKKKKKKKGFEEMEEEATSR----------DQRERVNKIYVKIIGEDQAM
        REKLNHRF  LR+VV NVS+MDK SLL D V +IN+L+ K   +E +   K   +  F E++E A  R          ++   + KI VKI+  D AM
Subjt:  REKLNHRFSFLRSVVLNVSRMDKASLLFDVVLHINDLQMKISELESQVPKKKKKKKGFEEMEEEATSR----------DQRERVNKIYVKIIGEDQAM

Arabidopsis top hitse value%identityAlignment
AT1G32640.1 Basic helix-loop-helix (bHLH) DNA-binding family protein3.0e-0750Show/hide
Query:  REKLNHRFSFLRSVVLNVSRMDKASLLFDVVLHINDLQMKISELESQVPKKKKKKKGFEEMEEEATSR
        REKLN RF  LR+VV NVS+MDKASLL D + +IN+L+ K+ + ES+   K + K   EE++ E   R
Subjt:  REKLNHRFSFLRSVVLNVSRMDKASLLFDVVLHINDLQMKISELESQVPKKKKKKKGFEEMEEEATSR

AT4G00870.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein1.6e-0839.8Show/hide
Query:  REKLNHRFSFLRSVVLNVSRMDKASLLFDVVLHINDLQMKISELESQVPKKKKKK-------------KGFEEMEEEATSRDQRERVNKIYVKIIGED
        REKLNHRF  LR++V  VSRMDKASLL D V +I  L+ KI +LE+++ K K  +                E    +  S+  R    ++ VKI+GE+
Subjt:  REKLNHRFSFLRSVVLNVSRMDKASLLFDVVLHINDLQMKISELESQVPKKKKKK-------------KGFEEMEEEATSRDQRERVNKIYVKIIGED

AT4G16430.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein4.0e-0751.72Show/hide
Query:  REKLNHRFSFLRSVVLNVSRMDKASLLFDVVLHINDLQMKIS--ELESQVPKKKKKKK
        REKLN RF  LR+VV N+S+MDKASLL D + +I D+Q KI   E E Q+ K+++  +
Subjt:  REKLNHRFSFLRSVVLNVSRMDKASLLFDVVLHINDLQMKIS--ELESQVPKKKKKKK

AT5G46760.1 Basic helix-loop-helix (bHLH) DNA-binding family protein4.0e-0742.42Show/hide
Query:  REKLNHRFSFLRSVVLNVSRMDKASLLFDVVLHINDLQMKISELESQVPKKKKK----------KKGFEEMEEEATSRDQRERVN----KIYVKIIGED
        REKLN RF  LR+VV NVS+MDKASLL D + +IN+L+ K+ + ES   + +KK           KG     +E  S +Q    +    +I VKIIG D
Subjt:  REKLNHRFSFLRSVVLNVSRMDKASLLFDVVLHINDLQMKISELESQVPKKKKK----------KKGFEEMEEEATSRDQRERVN----KIYVKIIGED

AT5G46830.1 NACL-inducible gene 16.1e-0842.86Show/hide
Query:  REKLNHRFSFLRSVVLNVSRMDKASLLFDVVLHINDLQMKISELESQVPKKKKKKKGFEEMEEEATSR----------DQRERVNKIYVKIIGEDQAM
        REKLNHRF  LR+VV NVS+MDK SLL D V +IN+L+ K   +E +   K   +  F E++E A  R          ++   + KI VKI+  D AM
Subjt:  REKLNHRFSFLRSVVLNVSRMDKASLLFDVVLHINDLQMKISELESQVPKKKKKKKGFEEMEEEATSR----------DQRERVNKIYVKIIGEDQAM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGAAGCTGCGTGAGAAGTTGAACCATCGATTCAGCTTTCTCCGTTCTGTGGTTCTGAATGTGTCGAGAATGGACAAAGCGTCTCTGTTATTCGACGTCGTTTT
GCACATCAATGATTTGCAAATGAAAATTTCAGAGTTGGAATCTCAGGTTCCAAAGAAGAAGAAGAAGAAAAAAGGGTTTGAAGAAATGGAAGAAGAAGCGACTTCGAGAG
ACCAACGAGAGAGGGTAAATAAAATTTATGTGAAGATTATTGGAGAAGATCAGGCAATGAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGAAGCTGCGTGAGAAGTTGAACCATCGATTCAGCTTTCTCCGTTCTGTGGTTCTGAATGTGTCGAGAATGGACAAAGCGTCTCTGTTATTCGACGTCGTTTT
GCACATCAATGATTTGCAAATGAAAATTTCAGAGTTGGAATCTCAGGTTCCAAAGAAGAAGAAGAAGAAAAAAGGGTTTGAAGAAATGGAAGAAGAAGCGACTTCGAGAG
ACCAACGAGAGAGGGTAAATAAAATTTATGTGAAGATTATTGGAGAAGATCAGGCAATGAATTAG
Protein sequenceShow/hide protein sequence
MTEKLREKLNHRFSFLRSVVLNVSRMDKASLLFDVVLHINDLQMKISELESQVPKKKKKKKGFEEMEEEATSRDQRERVNKIYVKIIGEDQAMN