; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi05G004630 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G004630
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRab family
Genome locationchr05:5899207..5901572
RNA-Seq ExpressionLsi05G004630
SyntenyLsi05G004630
Gene Ontology termsGO:0030100 - regulation of endocytosis (biological process)
GO:0005768 - endosome (cellular component)
GO:0003924 - GTPase activity (molecular function)
GO:0005525 - GTP binding (molecular function)
InterPro domainsIPR001806 - Small GTPase
IPR027417 - P-loop containing nucleoside triphosphate hydrolase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA8548167.1 hypothetical protein F0562_004572 [Nyssa sinensis]8.9e-2060.42Show/hide
Query:  MLIGNKVDLDRRIEVSQEEGEQFAKQNGLLFFHASAKTTQNIHEAFAKIAANVLEKIEDGVINLSNTPSGIKVGL-RGQRSSTAIATTISLQSGCC
        MLIGNK DL  R  VS+EEGEQFAK+NGLLF  ASA+T QN+ EAF K AA +L+KI++GV ++SN  SGIKVG  R Q  S A   TI+ + GCC
Subjt:  MLIGNKVDLDRRIEVSQEEGEQFAKQNGLLFFHASAKTTQNIHEAFAKIAANVLEKIEDGVINLSNTPSGIKVGL-RGQRSSTAIATTISLQSGCC

KAG2710474.1 hypothetical protein I3760_04G029300 [Carya illinoinensis]1.2e-1960.82Show/hide
Query:  MLIGNKVDLDRRIEVSQEEGEQFAKQNGLLFFHASAKTTQNIHEAFAKIAANVLEKIEDGVINLSNTPSGIKVGL-RGQRSSTAIATTISLQSGCCS
        MLIGNK DL  R  VS+EEGEQFAK+NGLLF  ASA+T QN+ EAF K AA +L+ I++GV ++SN  SGIKVG  R Q  S A   TIS   GCCS
Subjt:  MLIGNKVDLDRRIEVSQEEGEQFAKQNGLLFFHASAKTTQNIHEAFAKIAANVLEKIEDGVINLSNTPSGIKVGL-RGQRSSTAIATTISLQSGCCS

XP_004304678.1 PREDICTED: ras-related protein RABB1b [Fragaria vesca subsp. vesca]8.9e-2058.76Show/hide
Query:  MLIGNKVDLDRRIEVSQEEGEQFAKQNGLLFFHASAKTTQNIHEAFAKIAANVLEKIEDGVINLSNTPSGIKVGL-RGQRSSTAIATTISLQSGCCS
        ML+GNK DL  R  VS+EEGEQFAK+NGLLF  ASA+T QN+ EAF K AA +L+ I+DGV ++SN  SGIKVG  R Q  S A    ++ +SGCCS
Subjt:  MLIGNKVDLDRRIEVSQEEGEQFAKQNGLLFFHASAKTTQNIHEAFAKIAANVLEKIEDGVINLSNTPSGIKVGL-RGQRSSTAIATTISLQSGCCS

XP_030450747.1 ras-related protein RABB1b [Syzygium oleosum]6.8e-2055.21Show/hide
Query:  MLIGNKVDLDRRIEVSQEEGEQFAKQNGLLFFHASAKTTQNIHEAFAKIAANVLEKIEDGVINLSNTPSGIKVGLRGQRSSTAIATTISLQSGCCS
        MLIGNK DL  R  VS+EEGEQFAK+NGLLF  ASA+T QN+ EAF K A+ +L+ I+DGV ++SN  SGIKVG    +     + T++ + GCCS
Subjt:  MLIGNKVDLDRRIEVSQEEGEQFAKQNGLLFFHASAKTTQNIHEAFAKIAANVLEKIEDGVINLSNTPSGIKVGLRGQRSSTAIATTISLQSGCCS

XP_030544628.1 ras-related protein RABB1b [Rhodamnia argentea]8.9e-2058.76Show/hide
Query:  MLIGNKVDLDRRIEVSQEEGEQFAKQNGLLFFHASAKTTQNIHEAFAKIAANVLEKIEDGVINLSNTPSGIKVGL-RGQRSSTAIATTISLQSGCCS
        MLIGNK DL  R  VS+EEGEQFAK+NGLLF  ASA+T QN+ EAF K AA +L+ I+DGV ++SN  SGIKVG  R Q  + A   T++ + GCCS
Subjt:  MLIGNKVDLDRRIEVSQEEGEQFAKQNGLLFFHASAKTTQNIHEAFAKIAANVLEKIEDGVINLSNTPSGIKVGL-RGQRSSTAIATTISLQSGCCS

TrEMBL top hitse value%identityAlignment
A0A498HGV9 Uncharacterized protein5.7e-2055.21Show/hide
Query:  MLIGNKVDLDRRIEVSQEEGEQFAKQNGLLFFHASAKTTQNIHEAFAKIAANVLEKIEDGVINLSNTPSGIKVGLRGQRSSTAIATTISLQSGCCS
        MLIGNK DL  R  VS+EEGEQFAK+NGLLF  ASA+T QN+ EAF K AA +L+ I++GV ++SN  SGIKVG    +  +    T++ + GCCS
Subjt:  MLIGNKVDLDRRIEVSQEEGEQFAKQNGLLFFHASAKTTQNIHEAFAKIAANVLEKIEDGVINLSNTPSGIKVGLRGQRSSTAIATTISLQSGCCS

A0A498J3T3 Uncharacterized protein5.7e-2055.21Show/hide
Query:  MLIGNKVDLDRRIEVSQEEGEQFAKQNGLLFFHASAKTTQNIHEAFAKIAANVLEKIEDGVINLSNTPSGIKVGLRGQRSSTAIATTISLQSGCCS
        MLIGNK DL  R  VS+EEGEQFAK+NGLLF  ASA+T QN+ EAF K AA +L+ I++GV ++SN  SGIKVG    +  +    T++ + GCCS
Subjt:  MLIGNKVDLDRRIEVSQEEGEQFAKQNGLLFFHASAKTTQNIHEAFAKIAANVLEKIEDGVINLSNTPSGIKVGLRGQRSSTAIATTISLQSGCCS

A0A540MHB7 Uncharacterized protein5.7e-2055.21Show/hide
Query:  MLIGNKVDLDRRIEVSQEEGEQFAKQNGLLFFHASAKTTQNIHEAFAKIAANVLEKIEDGVINLSNTPSGIKVGLRGQRSSTAIATTISLQSGCCS
        MLIGNK DL  R  VS+EEGEQFAK+NGLLF  ASA+T QN+ EAF K AA +L+ I++GV ++SN  SGIKVG    +  +    T++   GCCS
Subjt:  MLIGNKVDLDRRIEVSQEEGEQFAKQNGLLFFHASAKTTQNIHEAFAKIAANVLEKIEDGVINLSNTPSGIKVGLRGQRSSTAIATTISLQSGCCS

A0A5J5C2N2 Uncharacterized protein4.3e-2060.42Show/hide
Query:  MLIGNKVDLDRRIEVSQEEGEQFAKQNGLLFFHASAKTTQNIHEAFAKIAANVLEKIEDGVINLSNTPSGIKVGL-RGQRSSTAIATTISLQSGCC
        MLIGNK DL  R  VS+EEGEQFAK+NGLLF  ASA+T QN+ EAF K AA +L+KI++GV ++SN  SGIKVG  R Q  S A   TI+ + GCC
Subjt:  MLIGNKVDLDRRIEVSQEEGEQFAKQNGLLFFHASAKTTQNIHEAFAKIAANVLEKIEDGVINLSNTPSGIKVGL-RGQRSSTAIATTISLQSGCC

A0A5N5GKA8 Ras-related protein RABB1b5.7e-2055.21Show/hide
Query:  MLIGNKVDLDRRIEVSQEEGEQFAKQNGLLFFHASAKTTQNIHEAFAKIAANVLEKIEDGVINLSNTPSGIKVGLRGQRSSTAIATTISLQSGCCS
        MLIGNK DL  R  VS+EEGEQFAK+NGLLF  ASA+T QN+ EAF K AA +L+ I++GV ++SN  SGIKVG    +  +    T++ + GCCS
Subjt:  MLIGNKVDLDRRIEVSQEEGEQFAKQNGLLFFHASAKTTQNIHEAFAKIAANVLEKIEDGVINLSNTPSGIKVGLRGQRSSTAIATTISLQSGCCS

SwissProt top hitse value%identityAlignment
P49103 Ras-related protein Rab-2-A6.0e-1954.08Show/hide
Query:  MLIGNKVDLDRRIEVSQEEGEQFAKQNGLLFFHASAKTTQNIHEAFAKIAANVLEKIEDGVINLSNTPSGIKVG--LRGQRSSTAIATTISLQSGCCS
        ML+GNK DL  R  VS EEGEQFAK++GL+F  ASAKT QN+ EAF K A  + +KI+DGV ++SN   GIKVG  + GQ      A + S   GCCS
Subjt:  MLIGNKVDLDRRIEVSQEEGEQFAKQNGLLFFHASAKTTQNIHEAFAKIAANVLEKIEDGVINLSNTPSGIKVG--LRGQRSSTAIATTISLQSGCCS

P49104 Ras-related protein Rab-2-B7.1e-2053.12Show/hide
Query:  MLIGNKVDLDRRIEVSQEEGEQFAKQNGLLFFHASAKTTQNIHEAFAKIAANVLEKIEDGVINLSNTPSGIKVGLRGQRSSTAIATTISLQSGCCS
        ML+GNK DL  R  VS EEGEQFAK++GL+F  ASAKT QN+ EAF K A  + +KI+DGV ++SN   GIKVG      S    ++ S   GCCS
Subjt:  MLIGNKVDLDRRIEVSQEEGEQFAKQNGLLFFHASAKTTQNIHEAFAKIAANVLEKIEDGVINLSNTPSGIKVGLRGQRSSTAIATTISLQSGCCS

P92963 Ras-related protein RABB1c7.9e-1955.21Show/hide
Query:  MLIGNKVDLDRRIEVSQEEGEQFAKQNGLLFFHASAKTTQNIHEAFAKIAANVLEKIEDGVINLSNTPSGIKVGLRG-QRSSTAIATTISLQSGCC
        MLIGNK DL  R  VS EEGEQFAK++GL+F  ASAKT QN+ EAF K AA + +KI+DGV ++SN   GIKVG  G    S     + S   GCC
Subjt:  MLIGNKVDLDRRIEVSQEEGEQFAKQNGLLFFHASAKTTQNIHEAFAKIAANVLEKIEDGVINLSNTPSGIKVGLRG-QRSSTAIATTISLQSGCC

Q38922 Ras-related protein RABB1b5.4e-2054.17Show/hide
Query:  MLIGNKVDLDRRIEVSQEEGEQFAKQNGLLFFHASAKTTQNIHEAFAKIAANVLEKIEDGVINLSNTPSGIKVGL-RGQRSSTAIATTISLQSGCC
        MLIGNK DL  +  VS+EEG+QFAK++GLLF  ASA+T QN+ EAF + AA +L+ I+DGV ++SN  SGIK+G  R Q ++     TIS   GCC
Subjt:  MLIGNKVDLDRRIEVSQEEGEQFAKQNGLLFFHASAKTTQNIHEAFAKIAANVLEKIEDGVINLSNTPSGIKVGL-RGQRSSTAIATTISLQSGCC

Q90965 Ras-related protein Rab-2A1.6e-1644.9Show/hide
Query:  MLIGNKVDLDRRIEVSQEEGEQFAKQNGLLFFHASAKTTQNIHEAFAKIAANVLEKIEDGVINLSNTPSGIKVGLRGQRSSTAIATTISLQ---SGCC
        MLIGNK DL+ R EV +EEGE FA+++GL+F   SAKT  N+ EAF   A  + EKI++GV +++N  +GIK+G +   ++  +A     Q    GCC
Subjt:  MLIGNKVDLDRRIEVSQEEGEQFAKQNGLLFFHASAKTTQNIHEAFAKIAANVLEKIEDGVINLSNTPSGIKVGLRGQRSSTAIATTISLQ---SGCC

Arabidopsis top hitse value%identityAlignment
AT3G09900.1 RAB GTPase homolog E1E3.8e-0831.96Show/hide
Query:  MLIGNKVDLDR-RIEVSQEEGEQFAKQNGLLFFHASAKTTQNIHEAFAKIAANVLEKIEDGVINLSNTPSGIKVGLRGQRSSTAIATTISLQSGCCS
        +L+GNK D+D  +  V   +G+  A + G+ FF  SAKT QN+ + F  IA ++ +++ +   +    P GIK+    Q ++ A +++ + +S CCS
Subjt:  MLIGNKVDLDR-RIEVSQEEGEQFAKQNGLLFFHASAKTTQNIHEAFAKIAANVLEKIEDGVINLSNTPSGIKVGLRGQRSSTAIATTISLQSGCCS

AT4G17160.1 RAB GTPase homolog B1A7.5e-1747.37Show/hide
Query:  MLIGNKVDLDRRIEVSQEEGEQFAKQNGLLFFHASAKTTQNIHEAFAKIAANVLEKIEDGVINLSNTPSGIKVGLRGQRSSTAIATTISLQSGCC
        MLIGNK DL+ +  VS EEGEQFA+++GL+F  ASAKT  N+ EAF + AA + ++I+DGV++ +N P GI  G  G +     A++   + GCC
Subjt:  MLIGNKVDLDRRIEVSQEEGEQFAKQNGLLFFHASAKTTQNIHEAFAKIAANVLEKIEDGVINLSNTPSGIKVGLRGQRSSTAIATTISLQSGCC

AT4G17170.1 RAB GTPase homolog B1C5.6e-2055.21Show/hide
Query:  MLIGNKVDLDRRIEVSQEEGEQFAKQNGLLFFHASAKTTQNIHEAFAKIAANVLEKIEDGVINLSNTPSGIKVGLRG-QRSSTAIATTISLQSGCC
        MLIGNK DL  R  VS EEGEQFAK++GL+F  ASAKT QN+ EAF K AA + +KI+DGV ++SN   GIKVG  G    S     + S   GCC
Subjt:  MLIGNKVDLDRRIEVSQEEGEQFAKQNGLLFFHASAKTTQNIHEAFAKIAANVLEKIEDGVINLSNTPSGIKVGLRG-QRSSTAIATTISLQSGCC

AT4G35860.1 GTP-binding 23.9e-2154.17Show/hide
Query:  MLIGNKVDLDRRIEVSQEEGEQFAKQNGLLFFHASAKTTQNIHEAFAKIAANVLEKIEDGVINLSNTPSGIKVGL-RGQRSSTAIATTISLQSGCC
        MLIGNK DL  +  VS+EEG+QFAK++GLLF  ASA+T QN+ EAF + AA +L+ I+DGV ++SN  SGIK+G  R Q ++     TIS   GCC
Subjt:  MLIGNKVDLDRRIEVSQEEGEQFAKQNGLLFFHASAKTTQNIHEAFAKIAANVLEKIEDGVINLSNTPSGIKVGL-RGQRSSTAIATTISLQSGCC

AT4G35860.2 GTP-binding 23.9e-2154.17Show/hide
Query:  MLIGNKVDLDRRIEVSQEEGEQFAKQNGLLFFHASAKTTQNIHEAFAKIAANVLEKIEDGVINLSNTPSGIKVGL-RGQRSSTAIATTISLQSGCC
        MLIGNK DL  +  VS+EEG+QFAK++GLLF  ASA+T QN+ EAF + AA +L+ I+DGV ++SN  SGIK+G  R Q ++     TIS   GCC
Subjt:  MLIGNKVDLDRRIEVSQEEGEQFAKQNGLLFFHASAKTTQNIHEAFAKIAANVLEKIEDGVINLSNTPSGIKVGL-RGQRSSTAIATTISLQSGCC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGATAGGAAACAAAGTTGATCTGGACCGTCGAATTGAAGTAAGCCAAGAAGAAGGAGAGCAATTTGCAAAACAAAATGGACTCTTGTTTTTTCACGCATCCGCTAA
AACAACTCAAAATATTCACGAGGCATTCGCAAAAATTGCAGCTAATGTACTTGAAAAGATTGAGGATGGTGTCATTAATTTATCCAATACACCATCTGGAATTAAAGTCG
GTTTGCGGGGCCAACGGTCATCGACGGCAATAGCTACAACAATTTCGTTGCAAAGTGGATGTTGTAGCATACAATGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGATAGGAAACAAAGTTGATCTGGACCGTCGAATTGAAGTAAGCCAAGAAGAAGGAGAGCAATTTGCAAAACAAAATGGACTCTTGTTTTTTCACGCATCCGCTAA
AACAACTCAAAATATTCACGAGGCATTCGCAAAAATTGCAGCTAATGTACTTGAAAAGATTGAGGATGGTGTCATTAATTTATCCAATACACCATCTGGAATTAAAGTCG
GTTTGCGGGGCCAACGGTCATCGACGGCAATAGCTACAACAATTTCGTTGCAAAGTGGATGTTGTAGCATACAATGAACATTGGGAATTAGATCATGTATACACAATGGA
TTTTTAACGATTTATTTAGTTATTATTATATATATTTTTTGAAATTCAATATTATACAAAGTGAAAATTCAAATC
Protein sequenceShow/hide protein sequence
MLIGNKVDLDRRIEVSQEEGEQFAKQNGLLFFHASAKTTQNIHEAFAKIAANVLEKIEDGVINLSNTPSGIKVGLRGQRSSTAIATTISLQSGCCSIQ