; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi05G004700 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G004700
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptioncystinosin homolog
Genome locationchr05:5953801..5957333
RNA-Seq ExpressionLsi05G004700
SyntenyLsi05G004700
Gene Ontology termsGO:0015811 - L-cystine transport (biological process)
GO:0005774 - vacuolar membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0015184 - L-cystine transmembrane transporter activity (molecular function)
InterPro domainsIPR005282 - Lysosomal cystine transporter
IPR006603 - PQ-loop repeat


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_016900860.1 PREDICTED: cystinosin homolog isoform X1 [Cucumis melo]3.8e-5185.16Show/hide
Query:  YGSANPFMALARLHIQAFLNFTRKSTVGFSIGNIVLDFTGGVATLAQMSVQSIDQGSWVNFFGNIGKPLLALTVLQVSIAFDLIFFYQHFVLYHTKASRV
        + S   FM + +   QAFLNFTRKSTVGFSIGNIVLDF+GGVATLAQMSVQS+DQGSWVNF GNIGKPLLALTVLQVSIAFDLIFFYQHFVLYH KASRV
Subjt:  YGSANPFMALARLHIQAFLNFTRKSTVGFSIGNIVLDFTGGVATLAQMSVQSIDQGSWVNFFGNIGKPLLALTVLQVSIAFDLIFFYQHFVLYHTKASRV

Query:  SFQRDPEST--EPLIKDSDHLQGIATAS
        SFQRDPEST  EPLIKDSDHLQGIAT S
Subjt:  SFQRDPEST--EPLIKDSDHLQGIATAS

XP_016900861.1 PREDICTED: cystinosin homolog isoform X2 [Cucumis melo]3.8e-5185.16Show/hide
Query:  YGSANPFMALARLHIQAFLNFTRKSTVGFSIGNIVLDFTGGVATLAQMSVQSIDQGSWVNFFGNIGKPLLALTVLQVSIAFDLIFFYQHFVLYHTKASRV
        + S   FM + +   QAFLNFTRKSTVGFSIGNIVLDF+GGVATLAQMSVQS+DQGSWVNF GNIGKPLLALTVLQVSIAFDLIFFYQHFVLYH KASRV
Subjt:  YGSANPFMALARLHIQAFLNFTRKSTVGFSIGNIVLDFTGGVATLAQMSVQSIDQGSWVNFFGNIGKPLLALTVLQVSIAFDLIFFYQHFVLYHTKASRV

Query:  SFQRDPEST--EPLIKDSDHLQGIATAS
        SFQRDPEST  EPLIKDSDHLQGIAT S
Subjt:  SFQRDPEST--EPLIKDSDHLQGIATAS

XP_038884260.1 cystinosin homolog isoform X3 [Benincasa hispida]6.1e-4984.13Show/hide
Query:  YGSANPFMALARLHIQAFLNFTRKSTVGFSIGNIVLDFTGGVATLAQMSVQSIDQGSWVNFFGNIGKPLLALTVLQVSIAFDLIFFYQHFVLYHTKASRV
        + S   FM   +   QAFLNFTRKSTVGFSIGNIVLDFTGGV TLAQMSVQSIDQGSWVNFFGNIGKPLLAL    VSI FDLIFFYQHFVLYH KASRV
Subjt:  YGSANPFMALARLHIQAFLNFTRKSTVGFSIGNIVLDFTGGVATLAQMSVQSIDQGSWVNFFGNIGKPLLALTVLQVSIAFDLIFFYQHFVLYHTKASRV

Query:  SFQRDPESTEPLIKDSDHLQGIATAS
        SFQRDPESTEPLIKDSDHLQGIAT S
Subjt:  SFQRDPESTEPLIKDSDHLQGIATAS

XP_038884268.1 cystinosin homolog isoform X4 [Benincasa hispida]8.2e-7092.11Show/hide
Query:  AWQPESLKDSHCYLRCSMVLCSSLLFYGSANPFMALARLHIQAFLNFTRKSTVGFSIGNIVLDFTGGVATLAQMSVQSIDQGSWVNFFGNIGKPLLALTV
        AWQPESL+D HCYL CSMVL SSLLFYGSANPFMALARLHIQAFLNFTRKSTVGFSIGNIVLDFTGGV TLAQMSVQSIDQGSWVNFFGNIGKPLLAL  
Subjt:  AWQPESLKDSHCYLRCSMVLCSSLLFYGSANPFMALARLHIQAFLNFTRKSTVGFSIGNIVLDFTGGVATLAQMSVQSIDQGSWVNFFGNIGKPLLALTV

Query:  LQVSIAFDLIFFYQHFVLYHTKASRVSFQRDPESTEPLIKDSDHLQGIATAS
          VSI FDLIFFYQHFVLYH KASRVSFQRDPESTEPLIKDSDHLQGIAT S
Subjt:  LQVSIAFDLIFFYQHFVLYHTKASRVSFQRDPESTEPLIKDSDHLQGIATAS

XP_038884308.1 cystinosin homolog isoform X9 [Benincasa hispida]6.1e-4984.13Show/hide
Query:  YGSANPFMALARLHIQAFLNFTRKSTVGFSIGNIVLDFTGGVATLAQMSVQSIDQGSWVNFFGNIGKPLLALTVLQVSIAFDLIFFYQHFVLYHTKASRV
        + S   FM   +   QAFLNFTRKSTVGFSIGNIVLDFTGGV TLAQMSVQSIDQGSWVNFFGNIGKPLLAL    VSI FDLIFFYQHFVLYH KASRV
Subjt:  YGSANPFMALARLHIQAFLNFTRKSTVGFSIGNIVLDFTGGVATLAQMSVQSIDQGSWVNFFGNIGKPLLALTVLQVSIAFDLIFFYQHFVLYHTKASRV

Query:  SFQRDPESTEPLIKDSDHLQGIATAS
        SFQRDPESTEPLIKDSDHLQGIAT S
Subjt:  SFQRDPESTEPLIKDSDHLQGIATAS

TrEMBL top hitse value%identityAlignment
A0A0A0LB92 Uncharacterized protein6.2e-4781.25Show/hide
Query:  YGSANPFMALARLHIQAFLNFTRKSTVGFSIGNIVLDFTGGVATLAQMSVQSIDQGSWVNFFGNIGKPLLALTVLQVSIAFDLIFFYQHFVLYHTKASRV
        + S   FM   +   QAFLNFTRKSTVGFSIGNIVLDF+GGVATLAQMSVQS+DQGSWVNF GNIGKPLLAL    VSIAFDLIFFYQHFVLYH KASRV
Subjt:  YGSANPFMALARLHIQAFLNFTRKSTVGFSIGNIVLDFTGGVATLAQMSVQSIDQGSWVNFFGNIGKPLLALTVLQVSIAFDLIFFYQHFVLYHTKASRV

Query:  SFQRDPEST--EPLIKDSDHLQGIATAS
        SFQRDPEST  EPLIKDSDHLQGI T S
Subjt:  SFQRDPEST--EPLIKDSDHLQGIATAS

A0A1S4DY01 cystinosin homolog isoform X21.9e-5185.16Show/hide
Query:  YGSANPFMALARLHIQAFLNFTRKSTVGFSIGNIVLDFTGGVATLAQMSVQSIDQGSWVNFFGNIGKPLLALTVLQVSIAFDLIFFYQHFVLYHTKASRV
        + S   FM + +   QAFLNFTRKSTVGFSIGNIVLDF+GGVATLAQMSVQS+DQGSWVNF GNIGKPLLALTVLQVSIAFDLIFFYQHFVLYH KASRV
Subjt:  YGSANPFMALARLHIQAFLNFTRKSTVGFSIGNIVLDFTGGVATLAQMSVQSIDQGSWVNFFGNIGKPLLALTVLQVSIAFDLIFFYQHFVLYHTKASRV

Query:  SFQRDPEST--EPLIKDSDHLQGIATAS
        SFQRDPEST  EPLIKDSDHLQGIAT S
Subjt:  SFQRDPEST--EPLIKDSDHLQGIATAS

A0A1S4DYQ8 cystinosin homolog isoform X11.9e-5185.16Show/hide
Query:  YGSANPFMALARLHIQAFLNFTRKSTVGFSIGNIVLDFTGGVATLAQMSVQSIDQGSWVNFFGNIGKPLLALTVLQVSIAFDLIFFYQHFVLYHTKASRV
        + S   FM + +   QAFLNFTRKSTVGFSIGNIVLDF+GGVATLAQMSVQS+DQGSWVNF GNIGKPLLALTVLQVSIAFDLIFFYQHFVLYH KASRV
Subjt:  YGSANPFMALARLHIQAFLNFTRKSTVGFSIGNIVLDFTGGVATLAQMSVQSIDQGSWVNFFGNIGKPLLALTVLQVSIAFDLIFFYQHFVLYHTKASRV

Query:  SFQRDPEST--EPLIKDSDHLQGIATAS
        SFQRDPEST  EPLIKDSDHLQGIAT S
Subjt:  SFQRDPEST--EPLIKDSDHLQGIATAS

A0A6J1DN06 cystinosin homolog4.0e-4677.24Show/hide
Query:  YGSANPFMALARLHIQAFLNFTRKSTVGFSIGNIVLDFTGGVATLAQMSVQSIDQGSWVNFFGNIGKPLLALTVLQVSIAFDLIFFYQHFVLYHTKASRV
        + +   FM + +   QAF+NFTRKSTVGFSIGN+VLDFTGGVA+LAQMSVQSIDQGSWVNFFGNIGKPLLAL    +SI FDLIFFYQHFVLYHTKASR+
Subjt:  YGSANPFMALARLHIQAFLNFTRKSTVGFSIGNIVLDFTGGVATLAQMSVQSIDQGSWVNFFGNIGKPLLALTVLQVSIAFDLIFFYQHFVLYHTKASRV

Query:  SFQRDPESTEPLIKDSDHLQGIA
        SFQ DPESTEPL+KDSDHL+G++
Subjt:  SFQRDPESTEPLIKDSDHLQGIA

A0A6J1EJ63 cystinosin homolog1.5e-4071.43Show/hide
Query:  YGSANPFMALARLHIQAFLNFTRKSTVGFSIGNIVLDFTGGVATLAQMSVQSIDQGSWVNFFGNIGKPLLALTVLQVSIAFDLIFFYQHFVLYHTKASRV
        + S    M + +   QAFLNFTRKST+GFSI  +VLDF GGVATL QM VQSIDQGSWVNFFGNIGKPLLA     VSI FDLIFFYQHFVLY  KAS+V
Subjt:  YGSANPFMALARLHIQAFLNFTRKSTVGFSIGNIVLDFTGGVATLAQMSVQSIDQGSWVNFFGNIGKPLLALTVLQVSIAFDLIFFYQHFVLYHTKASRV

Query:  SFQRDPESTEPLIKDSDHLQGIATAS
        S QRDPESTE L+++SDHLQGIAT +
Subjt:  SFQRDPESTEPLIKDSDHLQGIATAS

SwissProt top hitse value%identityAlignment
A7MB63 Cystinosin9.6e-1346.07Show/hide
Query:  MALARLHIQAFLNFTRKSTVGFSIGNIVLDFTGGVATLAQMSVQSIDQGSWVNFFGNIGKPLLALTVLQVSIAFDLIFFYQHFVLYHTK
        + L +   QA++NF  KST G+SIGN++LDFTGG  +L QM +QS +   W   FG+  K  L +     SI FD++FF QHF LY  K
Subjt:  MALARLHIQAFLNFTRKSTVGFSIGNIVLDFTGGVATLAQMSVQSIDQGSWVNFFGNIGKPLLALTVLQVSIAFDLIFFYQHFVLYHTK

A8WN56 Cystinosin homolog1.9e-1343.12Show/hide
Query:  QAFLNFTRKSTVGFSIGNIVLDFTGGVATLAQMSVQSIDQGSWVNFFGNIGKPLLALTVLQVSIAFDLIFFYQHFVLY------HTKASRVSFQRDPEST
        QA+ N+ RKSTVG+SIGNI+LDFTGG   + QM +Q+I+   W  F+ N  K  L      VSI FD+IF  QH+ LY      H +   V    DP+S 
Subjt:  QAFLNFTRKSTVGFSIGNIVLDFTGGVATLAQMSVQSIDQGSWVNFFGNIGKPLLALTVLQVSIAFDLIFFYQHFVLY------HTKASRVSFQRDPEST

Query:  EPLIKDSDH
          +++D++H
Subjt:  EPLIKDSDH

P57758 Cystinosin homolog2.0e-2655.08Show/hide
Query:  YGSANPFMALARLHIQAFLNFTRKSTVGFSIGNIVLDFTGGVATLAQMSVQSIDQGSWVNFFGNIGKPLLALTVLQVSIAFDLIFFYQHFVLYHTKASRV
        + S   FM   +   QA +NFTRKSTVG+SIGNI+LDFTGG+A   QM +QSIDQ SW NF+GN+GK LL+L    +SI FD++F +QH+VLY  K    
Subjt:  YGSANPFMALARLHIQAFLNFTRKSTVGFSIGNIVLDFTGGVATLAQMSVQSIDQGSWVNFFGNIGKPLLALTVLQVSIAFDLIFFYQHFVLYHTKASRV

Query:  SFQRDPESTEPLIKDSDH
        S +   ES EPLI DS H
Subjt:  SFQRDPESTEPLIKDSDH

Q09500 Cystinosin homolog8.7e-1452.56Show/hide
Query:  QAFLNFTRKSTVGFSIGNIVLDFTGGVATLAQMSVQSIDQGSWVNFFGNIGKPLLALTVLQVSIAFDLIFFYQHFVLY
        QA+ N+TRKSTVG+SIGNI+LDFTGG   + QM +Q+++   W  F+ N  K  L      VSI FD+IF  QH+VLY
Subjt:  QAFLNFTRKSTVGFSIGNIVLDFTGGVATLAQMSVQSIDQGSWVNFFGNIGKPLLALTVLQVSIAFDLIFFYQHFVLY

Q54WT7 Cystinosin homolog3.3e-1341Show/hide
Query:  FYGSANPFMALARLHIQAFLNFTRKSTVGFSIGNIVLDFTGGVATLAQMSVQSIDQGSWVNFFGNIGKPLLALTVLQVSIAFDLIFFYQHFVLYHTKASR
        +Y     F+   +   QA+LNF  KST G+S+ N++LDF+GGV +L QM +   D G+W  F G+  K  L+L     SIAFD++F  QH++LY    S+
Subjt:  FYGSANPFMALARLHIQAFLNFTRKSTVGFSIGNIVLDFTGGVATLAQMSVQSIDQGSWVNFFGNIGKPLLALTVLQVSIAFDLIFFYQHFVLYHTKASR

Arabidopsis top hitse value%identityAlignment
AT5G40670.1 PQ-loop repeat family protein / transmembrane family protein1.4e-2755.08Show/hide
Query:  YGSANPFMALARLHIQAFLNFTRKSTVGFSIGNIVLDFTGGVATLAQMSVQSIDQGSWVNFFGNIGKPLLALTVLQVSIAFDLIFFYQHFVLYHTKASRV
        + S   FM   +   QA +NFTRKSTVG+SIGNI+LDFTGG+A   QM +QSIDQ SW NF+GN+GK LL+L    +SI FD++F +QH+VLY  K    
Subjt:  YGSANPFMALARLHIQAFLNFTRKSTVGFSIGNIVLDFTGGVATLAQMSVQSIDQGSWVNFFGNIGKPLLALTVLQVSIAFDLIFFYQHFVLYHTKASRV

Query:  SFQRDPESTEPLIKDSDH
        S +   ES EPLI DS H
Subjt:  SFQRDPESTEPLIKDSDH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTATGGCTTCTTGGAAATGGAATTCAGTTTCACTCTACCCATTTGCAAAGTTTACTCTTCAATGCGTATTTACTCGGATGTATTACTTGGAGAAATATAGCCATGG
ACAAGCGTGGCAACCAGAAAGTCTCAAAGACAGCCATTGCTATCTTCGTTGCAGTATGGTTCTTTGCAGCAGCCTGCTTTTTTATGGCTCTGCCAACCCATTCATGGCTT
TGGCTCGTCTCCATATTCAAGCGTTTTTGAACTTCACCAGAAAGAGTACAGTGGGATTCAGCATTGGTAATATAGTTCTTGACTTCACTGGAGGAGTGGCAACTTTGGCT
CAGATGAGCGTGCAGTCAATTGACCAAGGTTCTTGGGTGAACTTTTTTGGAAACATAGGGAAGCCCTTGCTAGCTTTGACTGTGCTGCAGGTCTCTATAGCATTTGATCT
GATTTTCTTCTATCAACATTTTGTATTATATCATACCAAGGCATCAAGGGTTTCATTTCAACGTGACCCTGAAAGCACTGAGCCATTGATTAAGGACTCTGATCACTTGC
AAGGGATTGCCACAGCCAGTTGA
mRNA sequenceShow/hide mRNA sequence
AGAAAACATAATTTTAGTCCCAAAATATCGTTTGAAGCACTCTTCATTCTTCGTCGCCACTTCATCGTTACGCTGACTGTGTGATCCAAAACTCACAATCTTCTCTCCTC
GGCACTGAAGCTGATTTAAGGAGGGAGAAAGAGATGGCTATGGCTTCTTGGAAATGGAATTCAGTTTCACTCTACCCATTTGCAAAGTTTACTCTTCAATGCGTATTTAC
TCGGATGTATTACTTGGAGAAATATAGCCATGGACAAGCGTGGCAACCAGAAAGTCTCAAAGACAGCCATTGCTATCTTCGTTGCAGTATGGTTCTTTGCAGCAGCCTGC
TTTTTTATGGCTCTGCCAACCCATTCATGGCTTTGGCTCGTCTCCATATTCAAGCGTTTTTGAACTTCACCAGAAAGAGTACAGTGGGATTCAGCATTGGTAATATAGTT
CTTGACTTCACTGGAGGAGTGGCAACTTTGGCTCAGATGAGCGTGCAGTCAATTGACCAAGGTTCTTGGGTGAACTTTTTTGGAAACATAGGGAAGCCCTTGCTAGCTTT
GACTGTGCTGCAGGTCTCTATAGCATTTGATCTGATTTTCTTCTATCAACATTTTGTATTATATCATACCAAGGCATCAAGGGTTTCATTTCAACGTGACCCTGAAAGCA
CTGAGCCATTGATTAAGGACTCTGATCACTTGCAAGGGATTGCCACAGCCAGTTGA
Protein sequenceShow/hide protein sequence
MAMASWKWNSVSLYPFAKFTLQCVFTRMYYLEKYSHGQAWQPESLKDSHCYLRCSMVLCSSLLFYGSANPFMALARLHIQAFLNFTRKSTVGFSIGNIVLDFTGGVATLA
QMSVQSIDQGSWVNFFGNIGKPLLALTVLQVSIAFDLIFFYQHFVLYHTKASRVSFQRDPESTEPLIKDSDHLQGIATAS