CuGenDBv2

Gene ID	Lsi05G004830
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	DUF1713 domain-containing protein
Genome location	chr05:6149959..6150351
RNA-Seq Expression	Lsi05G004830
Synteny	Lsi05G004830
Gene Ontology terms	GO:0006397 - mRNA processing (biological process)
InterPro domains	IPR013177 - Mitochondrial mRNA-processing protein COX24, C-terminal

Homology

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GenBank top hits

e value

%identity

Alignment

KAE8650785.1 hypothetical protein Csa_017463 [Cucumis sativus]

1.2e-56

90.77

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Query:  MASMLQKLIRKSPPTRLIAALGAQTSQNLSTPYILHQPHDFDKKPDGHCDSNLNSVSTSNPSHFSQFYPSFPFGLWLPQISSTGVLPFEPNFVEQDDSRM
        MASMLQ LIRKSPPTRLIAALGAQTSQNLSTP+ILHQP DFDKKPD HC SN+NS STSNPSHFSQFYPSFPFGL LPQISSTG+LPFEP+ VEQDDSR 
Subjt:  MASMLQKLIRKSPPTRLIAALGAQTSQNLSTPYILHQPHDFDKKPDGHCDSNLNSVSTSNPSHFSQFYPSFPFGLWLPQISSTGVLPFEPNFVEQDDSRM

Query:  LWADSVKKKRKRKMNKHKYKKLRKRLRRQT
        LWADSVKKKRKRKMNKHKYKKLRKRLRRQT
Subjt:  LWADSVKKKRKRKMNKHKYKKLRKRLRRQT

KAG7017804.1 hypothetical protein SDJN02_19670, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.3e-55

89.23

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Query:  MASMLQKLIRKSPPTRLIAALGAQTSQNLSTPYILHQPHDFDKKPDGHCDSNLNSVSTSNPSHFSQFYPSFPFGLWLPQISSTGVLPFEPNFVEQDDSRM
        MASMLQKL+RKSPPTRLIAALG QTSQN   PYILHQP DFDKKPD HCDSNLNSVSTSNPSHFS FYPSFPFG  LPQISS+G+LPFEP+FVEQDDSR 
Subjt:  MASMLQKLIRKSPPTRLIAALGAQTSQNLSTPYILHQPHDFDKKPDGHCDSNLNSVSTSNPSHFSQFYPSFPFGLWLPQISSTGVLPFEPNFVEQDDSRM

Query:  LWADSVKKKRKRKMNKHKYKKLRKRLRRQT
        LWADSVKKKRKRKMNKHKYKKLRKRLRRQT
Subjt:  LWADSVKKKRKRKMNKHKYKKLRKRLRRQT

XP_011651574.1 uncharacterized protein LOC101220058 [Cucumis sativus]

1.2e-56

90.77

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Query:  MASMLQKLIRKSPPTRLIAALGAQTSQNLSTPYILHQPHDFDKKPDGHCDSNLNSVSTSNPSHFSQFYPSFPFGLWLPQISSTGVLPFEPNFVEQDDSRM
        MASMLQ LIRKSPPTRLIAALGAQTSQNLSTP+ILHQP DFDKKPD HC SN+NS STSNPSHFSQFYPSFPFGL LPQISSTG+LPFEP+ VEQDDSR 
Subjt:  MASMLQKLIRKSPPTRLIAALGAQTSQNLSTPYILHQPHDFDKKPDGHCDSNLNSVSTSNPSHFSQFYPSFPFGLWLPQISSTGVLPFEPNFVEQDDSRM

Query:  LWADSVKKKRKRKMNKHKYKKLRKRLRRQT
        LWADSVKKKRKRKMNKHKYKKLRKRLRRQT
Subjt:  LWADSVKKKRKRKMNKHKYKKLRKRLRRQT

XP_022934588.1 uncharacterized protein LOC111441723 [Cucurbita moschata]

3.0e-55

89.23

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Query:  MASMLQKLIRKSPPTRLIAALGAQTSQNLSTPYILHQPHDFDKKPDGHCDSNLNSVSTSNPSHFSQFYPSFPFGLWLPQISSTGVLPFEPNFVEQDDSRM
        MASMLQKL+RKSPPTRLIAALG QTSQN   PYILHQP DFDKKPD HCDSNLNSVSTSNPSHFS FYPSFPFG  LPQISS+G+LPFEP FVEQDDSR 
Subjt:  MASMLQKLIRKSPPTRLIAALGAQTSQNLSTPYILHQPHDFDKKPDGHCDSNLNSVSTSNPSHFSQFYPSFPFGLWLPQISSTGVLPFEPNFVEQDDSRM

Query:  LWADSVKKKRKRKMNKHKYKKLRKRLRRQT
        LWADSVKKKRKRKMNKHKYKKLRKRLRRQT
Subjt:  LWADSVKKKRKRKMNKHKYKKLRKRLRRQT

XP_023526336.1 uncharacterized protein LOC111789858 [Cucurbita pepo subsp. pepo]

6.7e-55

88.46

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Query:  MASMLQKLIRKSPPTRLIAALGAQTSQNLSTPYILHQPHDFDKKPDGHCDSNLNSVSTSNPSHFSQFYPSFPFGLWLPQISSTGVLPFEPNFVEQDDSRM
        MASMLQKL+RKSPPTRLIAALG QTSQN   PYILHQP DFDKKPD HCDSNLNSVSTSNPSHFS FYPSFPFG  LPQISS+G+LPFEP+FVEQD+SR 
Subjt:  MASMLQKLIRKSPPTRLIAALGAQTSQNLSTPYILHQPHDFDKKPDGHCDSNLNSVSTSNPSHFSQFYPSFPFGLWLPQISSTGVLPFEPNFVEQDDSRM

Query:  LWADSVKKKRKRKMNKHKYKKLRKRLRRQT
        LWADSVKKKRKRKMNKHKYKKLRKRLRRQT
Subjt:  LWADSVKKKRKRKMNKHKYKKLRKRLRRQT

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LDP0 DUF1713 domain-containing protein

5.9e-57

90.77

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Query:  MASMLQKLIRKSPPTRLIAALGAQTSQNLSTPYILHQPHDFDKKPDGHCDSNLNSVSTSNPSHFSQFYPSFPFGLWLPQISSTGVLPFEPNFVEQDDSRM
        MASMLQ LIRKSPPTRLIAALGAQTSQNLSTP+ILHQP DFDKKPD HC SN+NS STSNPSHFSQFYPSFPFGL LPQISSTG+LPFEP+ VEQDDSR 
Subjt:  MASMLQKLIRKSPPTRLIAALGAQTSQNLSTPYILHQPHDFDKKPDGHCDSNLNSVSTSNPSHFSQFYPSFPFGLWLPQISSTGVLPFEPNFVEQDDSRM

Query:  LWADSVKKKRKRKMNKHKYKKLRKRLRRQT
        LWADSVKKKRKRKMNKHKYKKLRKRLRRQT
Subjt:  LWADSVKKKRKRKMNKHKYKKLRKRLRRQT

A0A5A7UNU9 DUF1713 domain-containing protein

7.2e-55

89.23

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Query:  MASMLQKLIRKSPPTRLIAALGAQTSQNLSTPYILHQPHDFDKKPDGHCDSNLNSVSTSNPSHFSQFYPSFPFGLWLPQISSTGVLPFEPNFVEQDDSRM
        MASMLQKLIRKSPP+RLIAALGAQTSQNLSTP+ILHQP DFDKK D H  SNLNS STSNPS FSQFYPSFPFGL LPQISSTG+LPFEP++VEQDDSR 
Subjt:  MASMLQKLIRKSPPTRLIAALGAQTSQNLSTPYILHQPHDFDKKPDGHCDSNLNSVSTSNPSHFSQFYPSFPFGLWLPQISSTGVLPFEPNFVEQDDSRM

Query:  LWADSVKKKRKRKMNKHKYKKLRKRLRRQT
        LWADSVKKKRKRKMNKHKYKKLRKRLRRQT
Subjt:  LWADSVKKKRKRKMNKHKYKKLRKRLRRQT

A0A6J1F832 uncharacterized protein LOC111441723

1.4e-55

89.23

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Query:  MASMLQKLIRKSPPTRLIAALGAQTSQNLSTPYILHQPHDFDKKPDGHCDSNLNSVSTSNPSHFSQFYPSFPFGLWLPQISSTGVLPFEPNFVEQDDSRM
        MASMLQKL+RKSPPTRLIAALG QTSQN   PYILHQP DFDKKPD HCDSNLNSVSTSNPSHFS FYPSFPFG  LPQISS+G+LPFEP FVEQDDSR 
Subjt:  MASMLQKLIRKSPPTRLIAALGAQTSQNLSTPYILHQPHDFDKKPDGHCDSNLNSVSTSNPSHFSQFYPSFPFGLWLPQISSTGVLPFEPNFVEQDDSRM

Query:  LWADSVKKKRKRKMNKHKYKKLRKRLRRQT
        LWADSVKKKRKRKMNKHKYKKLRKRLRRQT
Subjt:  LWADSVKKKRKRKMNKHKYKKLRKRLRRQT

A0A6J1J7I5 uncharacterized protein LOC111482461

2.0e-52

86.15

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Query:  MASMLQKLIRKSPPTRLIAALGAQTSQNLSTPYILHQPHDFDKKPDGHCDSNLNSVSTSNPSHFSQFYPSFPFGLWLPQISSTGVLPFEPNFVEQDDSRM
        MASMLQKL+RKS PTRLIAALG QTSQN   PYILHQP DFDKKPD HCDSNLNSVSTS+ SHF  FYPSFPFG  LPQISS+G+LPFEP+FVEQDDSR 
Subjt:  MASMLQKLIRKSPPTRLIAALGAQTSQNLSTPYILHQPHDFDKKPDGHCDSNLNSVSTSNPSHFSQFYPSFPFGLWLPQISSTGVLPFEPNFVEQDDSRM

Query:  LWADSVKKKRKRKMNKHKYKKLRKRLRRQT
        LWADSVKKKRKRKMNKHKYKKLRKRLRRQT
Subjt:  LWADSVKKKRKRKMNKHKYKKLRKRLRRQT

A0A6J1JQJ4 uncharacterized protein LOC111486591

1.3e-51

83.85

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Query:  MASMLQKLIRKSPPTRLIAALGAQTSQNLSTPYILHQPHDFDKKPDGHCDSNLNSVSTSNPSHFSQFYPSFPFGLWLPQISSTGVLPFEPNFVEQDDSRM
        MAS+LQKLIRKSPPTR IAALG+QTSQN S PYILHQP D D+KPDGHCDSNLNSVSTS PS FSQF+PSFPFGL+L QISSTG + FEP++VE++DSR 
Subjt:  MASMLQKLIRKSPPTRLIAALGAQTSQNLSTPYILHQPHDFDKKPDGHCDSNLNSVSTSNPSHFSQFYPSFPFGLWLPQISSTGVLPFEPNFVEQDDSRM

Query:  LWADSVKKKRKRKMNKHKYKKLRKRLRRQT
        LWADSVKKKRKRKMNKHKYKKLRKRLRRQT
Subjt:  LWADSVKKKRKRKMNKHKYKKLRKRLRRQT

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G63150.1 unknown protein

3.2e-07

41.94

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Query:  KKPDGHCDSN-LNSVSTSNPSHFSQFYPSFPFGLWLPQISSTGVLPFEPNFVEQDDSR----MLWADSVKKKRKRKMNKHKYKKLRKRLRRQT
        +KPD    +N L ++S +  +   +FYPSF  GL L      G+   E   +E+++      +++ADSVKKKRK+KMNKHKY+KLRK+L R++
Subjt:  KKPDGHCDSN-LNSVSTSNPSHFSQFYPSFPFGLWLPQISSTGVLPFEPNFVEQDDSR----MLWADSVKKKRKRKMNKHKYKKLRKRLRRQT

Sequences

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CDS sequence

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ATGGCGTCGATGCTTCAAAAGCTCATCAGAAAATCGCCACCCACAAGATTAATTGCTGCTCTGGGTGCCCAGACCTCTCAGAATCTCTCAACACCCTACATTCTTCACCA
GCCGCATGATTTTGATAAGAAACCAGACGGGCATTGCGATTCTAATTTAAACTCTGTTTCTACATCGAATCCGTCTCACTTTTCCCAGTTTTACCCTAGTTTTCCATTTG
GGCTTTGGTTGCCGCAAATCTCCTCAACTGGGGTGCTTCCGTTCGAGCCTAATTTTGTTGAGCAAGACGATTCTCGGATGTTATGGGCTGATAGCGTGAAGAAGAAGAGG
AAACGGAAGATGAACAAGCATAAGTACAAGAAGCTAAGGAAGCGGCTCCGAAGACAGACATAG

mRNA sequence

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Protein sequence

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MASMLQKLIRKSPPTRLIAALGAQTSQNLSTPYILHQPHDFDKKPDGHCDSNLNSVSTSNPSHFSQFYPSFPFGLWLPQISSTGVLPFEPNFVEQDDSRMLWADSVKKKR
KRKMNKHKYKKLRKRLRRQT

Lsi05G004830 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome