; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi05G004950 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G004950
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionvegetative cell wall protein gp1-like
Genome locationchr05:6253930..6254517
RNA-Seq ExpressionLsi05G004950
SyntenyLsi05G004950
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_011652729.1 extensin [Cucumis sativus]5.8e-6376.24Show/hide
Query:  MDKFAL-LTVLILFSPFTGVVFGYNSLAAAPKPTKT------AHSPVVSPPSHSASPSKSPTVSPPATTPAISPALATPPSVAPPKAPASAPVSSPAASP
        M KFAL +T+L LFSPF G+VF  +S AA+PKP KT      AHSPVVSPPSH+ SPSKSP  SPP  TP ISPALATPPSVAP KAPA+ P+SSP    
Subjt:  MDKFAL-LTVLILFSPFTGVVFGYNSLAAAPKPTKT------AHSPVVSPPSHSASPSKSPTVSPPATTPAISPALATPPSVAPPKAPASAPVSSPAASP

Query:  VGSENSPVSSPPSPPSFDASPVATPVGAPVEPEIPANPISGGTPVGTPSIFPSSSSPPMSTPASLAPETAERPGNDASAFGKHKIGVEVILSGLSIWAAW
          SENSP+SSPPSP  FDAS    PVGAPVEPEIPANPISGG+PVGTPSIFPSSSSPPM+TP SLAPETAERPGNDASA GK+KIGVEVILSGLSIWAAW
Subjt:  VGSENSPVSSPPSPPSFDASPVATPVGAPVEPEIPANPISGGTPVGTPSIFPSSSSPPMSTPASLAPETAERPGNDASAFGKHKIGVEVILSGLSIWAAW

Query:  AF
        AF
Subjt:  AF

XP_022932347.1 gibberellin-regulated protein 14-like [Cucurbita moschata]7.9e-6879.6Show/hide
Query:  MDKFALLTVLILFSPFTGVVFGYNSLAAAPKPTKT------AHSPVVSPPSHSASPSKSPTVSPPATTPAISPALATPPSVAPPKAPASAPVSSPAASPV
        M+KFAL TVLILFS FT VV GY+S AAAPKPTKT      AHSPVVSPP+HSASP  SPT SPPA TPAISP+LATPP V+PPKAPA+APVSSPAASPV
Subjt:  MDKFALLTVLILFSPFTGVVFGYNSLAAAPKPTKT------AHSPVVSPPSHSASPSKSPTVSPPATTPAISPALATPPSVAPPKAPASAPVSSPAASPV

Query:  GSENSPVSSPPSPPSFDASPVATPVGAPVEPEIPANPISGGTPVGTPSIFPSSSSPPMSTPASLAPETAERPGNDASAFGKHKIGVEVILSGLSIWAAWA
         S  SP+ SPPSP   DASPV  PVGAPVEPEIPANPI+GGTPV TPSIFPSSSSPPMSTPASLAPETAE PG DASA GK++IG EVILSGLSIWA WA
Subjt:  GSENSPVSSPPSPPSFDASPVATPVGAPVEPEIPANPISGGTPVGTPSIFPSSSSPPMSTPASLAPETAERPGNDASAFGKHKIGVEVILSGLSIWAAWA

Query:  F
        F
Subjt:  F

XP_023007601.1 gibberellin-regulated protein 14-like [Cucurbita maxima]2.8e-6577.61Show/hide
Query:  MDKFALLTVLILFSPFTGVVFGYNSLAAAPKPTKT------AHSPVVSPPSHSASPSKSPTVSPPATTPAISPALATPPSVAPPKAPASAPVSSPAASPV
        M+ FAL TVLILFS FT VV  Y+S AAAPKPTKT      AHSPV SPPSHSASP  SPT SPPA TPAISP+L TPP V+PPK PA+APVSSPAASPV
Subjt:  MDKFALLTVLILFSPFTGVVFGYNSLAAAPKPTKT------AHSPVVSPPSHSASPSKSPTVSPPATTPAISPALATPPSVAPPKAPASAPVSSPAASPV

Query:  GSENSPVSSPPSPPSFDASPVATPVGAPVEPEIPANPISGGTPVGTPSIFPSSSSPPMSTPASLAPETAERPGNDASAFGKHKIGVEVILSGLSIWAAWA
         S  SPV SPPSP   DASPV  PVGAPVEPEIPANPI+GGTPV TPSIFPSSSSPPMSTPASLAPETAE PG DAS  GK++IG EVILSGLSIWA WA
Subjt:  GSENSPVSSPPSPPSFDASPVATPVGAPVEPEIPANPISGGTPVGTPSIFPSSSSPPMSTPASLAPETAERPGNDASAFGKHKIGVEVILSGLSIWAAWA

Query:  F
        F
Subjt:  F

XP_023552940.1 gibberellin-regulated protein 14-like [Cucurbita pepo subsp. pepo]6.2e-6578.11Show/hide
Query:  MDKFALLTVLILFSPFTGVVFGYNSLAAAPKPTKT------AHSPVVSPPSHSASPSKSPTVSPPATTPAISPALATPPSVAPPKAPASAPVSSPAASPV
        M+KF L TVLILFS FT VVFGY+S AAAPKPTKT      AHSPVVSPP+HSASP  SPT SPPA TPAISP+LATPP V+PPKAPA+APVSSPAASPV
Subjt:  MDKFALLTVLILFSPFTGVVFGYNSLAAAPKPTKT------AHSPVVSPPSHSASPSKSPTVSPPATTPAISPALATPPSVAPPKAPASAPVSSPAASPV

Query:  GSENSPVSSPPSPPSFDASPVATPVGAPVEPEIPANPISGGTPVGTPSIFPSSSSPPMSTPASLAPETAERPGNDASAFGKHKIGVEVILSGLSIWAAWA
         S      SPPSP   DASPV  PVGAPVEPEIPANPI+GGTPV TPSIFPSSSSPPMSTPASLAPETAE PG DASA GK++IG EVILSGLS+WA WA
Subjt:  GSENSPVSSPPSPPSFDASPVATPVGAPVEPEIPANPISGGTPVGTPSIFPSSSSPPMSTPASLAPETAERPGNDASAFGKHKIGVEVILSGLSIWAAWA

Query:  F
        F
Subjt:  F

XP_038904208.1 calphotin-like [Benincasa hispida]5.4e-7788.06Show/hide
Query:  MDKFALLTVLILFSPFTGVVFGYNSLAAAPKPTKT------AHSPVVSPPSHSASPSKSPTVSPPATTPAISPALATPPSVAPPKAPASAPVSSPAASPV
        MDKFAL TVLILFSPFTGVVFGY+S AAAPKPTKT      AHSPVVSPPS SASP K P  SPPA TPAISPA ATPPSVAPPKAPASAPVSSPA SPV
Subjt:  MDKFALLTVLILFSPFTGVVFGYNSLAAAPKPTKT------AHSPVVSPPSHSASPSKSPTVSPPATTPAISPALATPPSVAPPKAPASAPVSSPAASPV

Query:  GSENSPVSSPPSPPSFDASPVATPVGAPVEPEIPANPISGGTPVGTPSIFPSSSSPPMSTPASLAPETAERPGNDASAFGKHKIGVEVILSGLSIWAAWA
         SE SPVSSPPSPP  DASPVATPVG PVEPEIPANPISGGTPVGTPSIFPSSSSPPMSTPASLAPETAERPGNDASA GK KIGVEVILSGLSIWAAWA
Subjt:  GSENSPVSSPPSPPSFDASPVATPVGAPVEPEIPANPISGGTPVGTPSIFPSSSSPPMSTPASLAPETAERPGNDASAFGKHKIGVEVILSGLSIWAAWA

Query:  F
        F
Subjt:  F

TrEMBL top hitse value%identityAlignment
A0A0A0L269 Lipid binding protein2.8e-6376.24Show/hide
Query:  MDKFAL-LTVLILFSPFTGVVFGYNSLAAAPKPTKT------AHSPVVSPPSHSASPSKSPTVSPPATTPAISPALATPPSVAPPKAPASAPVSSPAASP
        M KFAL +T+L LFSPF G+VF  +S AA+PKP KT      AHSPVVSPPSH+ SPSKSP  SPP  TP ISPALATPPSVAP KAPA+ P+SSP    
Subjt:  MDKFAL-LTVLILFSPFTGVVFGYNSLAAAPKPTKT------AHSPVVSPPSHSASPSKSPTVSPPATTPAISPALATPPSVAPPKAPASAPVSSPAASP

Query:  VGSENSPVSSPPSPPSFDASPVATPVGAPVEPEIPANPISGGTPVGTPSIFPSSSSPPMSTPASLAPETAERPGNDASAFGKHKIGVEVILSGLSIWAAW
          SENSP+SSPPSP  FDAS    PVGAPVEPEIPANPISGG+PVGTPSIFPSSSSPPM+TP SLAPETAERPGNDASA GK+KIGVEVILSGLSIWAAW
Subjt:  VGSENSPVSSPPSPPSFDASPVATPVGAPVEPEIPANPISGGTPVGTPSIFPSSSSPPMSTPASLAPETAERPGNDASAFGKHKIGVEVILSGLSIWAAW

Query:  AF
        AF
Subjt:  AF

A0A5A7VJY8 Extensin-like4.8e-6375.62Show/hide
Query:  MDKFALLTVLILFSPFTGVVFGYNSLAAAPKPTKT------AHSPVVSPPSHSASPSKSPTVSPPATTPAISPALATPPSVAPPKAPASAPVSSPAASPV
        M  FAL TVL   SPF G+VF Y+S AA+PKP KT      AHSPVVSPPS S SPSKSPT SPP  TP ISPALATPPSVAP KAPA+ P+SSP     
Subjt:  MDKFALLTVLILFSPFTGVVFGYNSLAAAPKPTKT------AHSPVVSPPSHSASPSKSPTVSPPATTPAISPALATPPSVAPPKAPASAPVSSPAASPV

Query:  GSENSPVSSPPSPPSFDASPVATPVGAPVEPEIPANPISGGTPVGTPSIFPSSSSPPMSTPASLAPETAERPGNDASAFGKHKIGVEVILSGLSIWAAWA
         SENSPVSSPPSP  FDAS    PVGAPVEPEIPANPISGG+PVGTPSIFPSSSSPPM+TP +LAPETAERPGNDASA G++KIGVEV+LSGLSIWAAWA
Subjt:  GSENSPVSSPPSPPSFDASPVATPVGAPVEPEIPANPISGGTPVGTPSIFPSSSSPPMSTPASLAPETAERPGNDASAFGKHKIGVEVILSGLSIWAAWA

Query:  F
        F
Subjt:  F

A0A6J1DWL9 classical arabinogalactan protein 4-like4.5e-6173.3Show/hide
Query:  MDKFALLTVLILFSPFTGVVFGYNSLAAAPKPTKT------AHSPVVSPPSHSASPSKSPTVSPPATTPAISPALATPPSVAPPKAPASAPVSSPAASPV
        M+K A LTVL+LF+PFTGVV  Y++ A +PKPTKT       HSP VS PSHSASPSKSP  SPPATTP ISPAL+TPP+ A P+APA+AP SSP ASPV
Subjt:  MDKFALLTVLILFSPFTGVVFGYNSLAAAPKPTKT------AHSPVVSPPSHSASPSKSPTVSPPATTPAISPALATPPSVAPPKAPASAPVSSPAASPV

Query:  GSENSPVSSPPSPPSFDASPVA----TPVGAPVEPEIPANPISGGTPVGTPSIFPSSSSPPMSTPASLAPETAERPGNDASAF-GKHKIGVEVILSGLSI
        GSE SPVSSPPSPP   ASPV+    TP G+P EPEIPANPI+GG+PV TPSIFPSSSSPPMS+P SLAPETAERPGNDASA   K+KIG EVILSG+SI
Subjt:  GSENSPVSSPPSPPSFDASPVA----TPVGAPVEPEIPANPISGGTPVGTPSIFPSSSSPPMSTPASLAPETAERPGNDASAF-GKHKIGVEVILSGLSI

Query:  WAAWAF
        WAAWAF
Subjt:  WAAWAF

A0A6J1EWE6 gibberellin-regulated protein 14-like3.8e-6879.6Show/hide
Query:  MDKFALLTVLILFSPFTGVVFGYNSLAAAPKPTKT------AHSPVVSPPSHSASPSKSPTVSPPATTPAISPALATPPSVAPPKAPASAPVSSPAASPV
        M+KFAL TVLILFS FT VV GY+S AAAPKPTKT      AHSPVVSPP+HSASP  SPT SPPA TPAISP+LATPP V+PPKAPA+APVSSPAASPV
Subjt:  MDKFALLTVLILFSPFTGVVFGYNSLAAAPKPTKT------AHSPVVSPPSHSASPSKSPTVSPPATTPAISPALATPPSVAPPKAPASAPVSSPAASPV

Query:  GSENSPVSSPPSPPSFDASPVATPVGAPVEPEIPANPISGGTPVGTPSIFPSSSSPPMSTPASLAPETAERPGNDASAFGKHKIGVEVILSGLSIWAAWA
         S  SP+ SPPSP   DASPV  PVGAPVEPEIPANPI+GGTPV TPSIFPSSSSPPMSTPASLAPETAE PG DASA GK++IG EVILSGLSIWA WA
Subjt:  GSENSPVSSPPSPPSFDASPVATPVGAPVEPEIPANPISGGTPVGTPSIFPSSSSPPMSTPASLAPETAERPGNDASAFGKHKIGVEVILSGLSIWAAWA

Query:  F
        F
Subjt:  F

A0A6J1L107 gibberellin-regulated protein 14-like1.4e-6577.61Show/hide
Query:  MDKFALLTVLILFSPFTGVVFGYNSLAAAPKPTKT------AHSPVVSPPSHSASPSKSPTVSPPATTPAISPALATPPSVAPPKAPASAPVSSPAASPV
        M+ FAL TVLILFS FT VV  Y+S AAAPKPTKT      AHSPV SPPSHSASP  SPT SPPA TPAISP+L TPP V+PPK PA+APVSSPAASPV
Subjt:  MDKFALLTVLILFSPFTGVVFGYNSLAAAPKPTKT------AHSPVVSPPSHSASPSKSPTVSPPATTPAISPALATPPSVAPPKAPASAPVSSPAASPV

Query:  GSENSPVSSPPSPPSFDASPVATPVGAPVEPEIPANPISGGTPVGTPSIFPSSSSPPMSTPASLAPETAERPGNDASAFGKHKIGVEVILSGLSIWAAWA
         S  SPV SPPSP   DASPV  PVGAPVEPEIPANPI+GGTPV TPSIFPSSSSPPMSTPASLAPETAE PG DAS  GK++IG EVILSGLSIWA WA
Subjt:  GSENSPVSSPPSPPSFDASPVATPVGAPVEPEIPANPISGGTPVGTPSIFPSSSSPPMSTPASLAPETAERPGNDASAFGKHKIGVEVILSGLSIWAAWA

Query:  F
        F
Subjt:  F

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G68725.1 arabinogalactan protein 193.8e-0437.23Show/hide
Query:  SPFTGVVFGYNSLAAAPKPTKTAHSPVVSPPSHSASPSKSPTVSPPATTPAISPA--------LATPPSVAPPKAPASAP-VSSPAASPVGSENSPVSSP
        SP T          AAP  T        +PP  +A P  SP   PPA TP   PA         ATPP   P   PASAP VS P  SP  +  SP  +P
Subjt:  SPFTGVVFGYNSLAAAPKPTKTAHSPVVSPPSHSASPSKSPTVSPPATTPAISPA--------LATPPSVAPPKAPASAP-VSSPAASPVGSENSPVSSP

Query:  PSPPSFDASPVATPVGAPVEPEIPANPISGGTPVGTP
         SPP   ASP   P   P  P  P  P+   +P+  P
Subjt:  PSPPSFDASPVATPVGAPVEPEIPANPISGGTPVGTP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAAATTTGCTCTGTTAACTGTTCTGATTTTGTTTTCGCCATTCACCGGCGTCGTTTTCGGTTACAATTCGCTGGCCGCCGCTCCAAAACCCACTAAAACGGCTCA
TTCTCCGGTGGTTTCGCCGCCGAGTCACTCGGCATCTCCGTCGAAGTCTCCGACTGTTTCTCCACCGGCGACAACTCCGGCTATTTCTCCGGCATTGGCTACCCCACCAT
CTGTAGCACCCCCGAAGGCTCCGGCTTCGGCGCCGGTTTCTTCGCCGGCGGCAAGTCCGGTAGGGAGTGAAAATTCACCAGTTTCGTCGCCGCCGTCTCCTCCGTCTTTC
GATGCTTCTCCGGTGGCTACTCCAGTTGGGGCTCCAGTGGAACCAGAAATTCCGGCCAATCCGATCTCGGGAGGGACTCCGGTGGGGACGCCGTCGATATTCCCGTCGAG
CAGCAGCCCACCAATGTCGACTCCGGCAAGTCTAGCACCGGAAACGGCGGAGAGGCCTGGAAACGACGCATCGGCGTTTGGGAAACACAAGATCGGGGTGGAGGTTATTT
TAAGTGGGCTTTCTATTTGGGCCGCTTGGGCCTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGACAAATTTGCTCTGTTAACTGTTCTGATTTTGTTTTCGCCATTCACCGGCGTCGTTTTCGGTTACAATTCGCTGGCCGCCGCTCCAAAACCCACTAAAACGGCTCA
TTCTCCGGTGGTTTCGCCGCCGAGTCACTCGGCATCTCCGTCGAAGTCTCCGACTGTTTCTCCACCGGCGACAACTCCGGCTATTTCTCCGGCATTGGCTACCCCACCAT
CTGTAGCACCCCCGAAGGCTCCGGCTTCGGCGCCGGTTTCTTCGCCGGCGGCAAGTCCGGTAGGGAGTGAAAATTCACCAGTTTCGTCGCCGCCGTCTCCTCCGTCTTTC
GATGCTTCTCCGGTGGCTACTCCAGTTGGGGCTCCAGTGGAACCAGAAATTCCGGCCAATCCGATCTCGGGAGGGACTCCGGTGGGGACGCCGTCGATATTCCCGTCGAG
CAGCAGCCCACCAATGTCGACTCCGGCAAGTCTAGCACCGGAAACGGCGGAGAGGCCTGGAAACGACGCATCGGCGTTTGGGAAACACAAGATCGGGGTGGAGGTTATTT
TAAGTGGGCTTTCTATTTGGGCCGCTTGGGCCTTTTGA
Protein sequenceShow/hide protein sequence
MDKFALLTVLILFSPFTGVVFGYNSLAAAPKPTKTAHSPVVSPPSHSASPSKSPTVSPPATTPAISPALATPPSVAPPKAPASAPVSSPAASPVGSENSPVSSPPSPPSF
DASPVATPVGAPVEPEIPANPISGGTPVGTPSIFPSSSSPPMSTPASLAPETAERPGNDASAFGKHKIGVEVILSGLSIWAAWAF