; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi05G005190 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G005190
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRNA polymerase II elongation factor
Genome locationchr05:6495718..6496374
RNA-Seq ExpressionLsi05G005190
SyntenyLsi05G005190
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7015562.1 hypothetical protein SDJN02_23198, partial [Cucurbita argyrosperma subsp. argyrosperma]4.3e-9985.25Show/hide
Query:  ESKDSG--VHIVEIPVQHENHTQNQTLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTSS
        E+KDSG   H+VEIP       +NQ +MISVI+ HPLRQISESSGHLLLLKLWQR+EHLFGLRIGRRETK+ESLKQQIFQLCCYFFLFHALSLTLL+TSS
Subjt:  ESKDSG--VHIVEIPVQHENHTQNQTLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTSS

Query:  DPNVCKKWWVPAVAMGATSGVFVIVVQLKLWLYWKATGQLRREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISL
        DPNVC KWWVP VAMGATSGVFVIVVQLKLWLYWKA+ QL+REKSENRALTRCVQELRMKGSCFNLSKEPQIG+RMKSSSVEIKWGPLTW SRNF+TI L
Subjt:  DPNVCKKWWVPAVAMGATSGVFVIVVQLKLWLYWKATGQLRREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISL

Query:  FCFSAIVFAASKFILCG
         CFS IVF ASKFILCG
Subjt:  FCFSAIVFAASKFILCG

XP_004149573.1 uncharacterized protein LOC101219596 [Cucumis sativus]1.8e-10589.95Show/hide
Query:  MAESKDS-GVHIVEIPVQHENHTQNQTLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTS
        MAE+KDS   HIVEIPV+ ENHTQN  LMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCC+FFLFHALSLTLLYTS
Subjt:  MAESKDS-GVHIVEIPVQHENHTQNQTLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTS

Query:  SDPNVCKKWWVPAVAMGATSGVFVIVVQLKLWLYWKATGQLRREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITIS
        SDP VCKKWWVPAV +GATSGVFVIVVQLKLW+YWKA GQL++EK+ENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITIS
Subjt:  SDPNVCKKWWVPAVAMGATSGVFVIVVQLKLWLYWKATGQLRREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITIS

Query:  LFCFSAIVFAASKFILCGF
        L  FSAI+F  SKFILCGF
Subjt:  LFCFSAIVFAASKFILCGF

XP_008449068.1 PREDICTED: uncharacterized protein LOC103491049 [Cucumis melo]8.1e-10690.87Show/hide
Query:  MAESKDS-GVHIVEIPVQHENHTQNQTLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTS
        MA++KDS   HIVEIPV+ ENHTQN  LMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCC+FFLFHALSLTLLYTS
Subjt:  MAESKDS-GVHIVEIPVQHENHTQNQTLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTS

Query:  SDPNVCKKWWVPAVAMGATSGVFVIVVQLKLWLYWKATGQLRREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITIS
        SDP VCKKWWVPAV +GATSGVFVIVVQLKLW+YWKA GQL+REKSENRALTRC QELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFI IS
Subjt:  SDPNVCKKWWVPAVAMGATSGVFVIVVQLKLWLYWKATGQLRREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITIS

Query:  LFCFSAIVFAASKFILCGF
        L  FSAIVFAASKFILCGF
Subjt:  LFCFSAIVFAASKFILCGF

XP_023553388.1 uncharacterized protein LOC111810817 [Cucurbita pepo subsp. pepo]4.3e-9985.19Show/hide
Query:  ESKDSG-VHIVEIPVQHENHTQNQTLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTSSD
        E++DSG  H+VEIP       +NQ +MISVI+ HPLRQISESSGHLLLLKLWQR+EHLFGLR+GRRETKMESLKQQIFQLCCYFFLFHALSLTLL+TSSD
Subjt:  ESKDSG-VHIVEIPVQHENHTQNQTLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTSSD

Query:  PNVCKKWWVPAVAMGATSGVFVIVVQLKLWLYWKATGQLRREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISLF
        PNVC KWWVP VAMGATSGVFVIVVQLKLWLYWKA+ QL+REKSENRALTRCVQELRMKGSCFNLSKEPQIG+RMKSSSVEIKWGPLTW SRNF+TI L 
Subjt:  PNVCKKWWVPAVAMGATSGVFVIVVQLKLWLYWKATGQLRREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISLF

Query:  CFSAIVFAASKFILCG
        CFS IVF ASKFILCG
Subjt:  CFSAIVFAASKFILCG

XP_038905570.1 uncharacterized protein LOC120091553 [Benincasa hispida]3.8e-11193.58Show/hide
Query:  MAESKDSGVHIVEIPVQHENHTQNQTLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTSS
        MAE+KDSG HIVEIPV+ ENHTQNQ  MISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCC+FFLFHALSLTLLYTSS
Subjt:  MAESKDSGVHIVEIPVQHENHTQNQTLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTSS

Query:  DPNVCKKWWVPAVAMGATSGVFVIVVQLKLWLYWKATGQLRREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISL
        DPNVCKKWWVPAVAMGATSGVFVIVVQLKLWLYWKA+GQL+REK+ENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITI L
Subjt:  DPNVCKKWWVPAVAMGATSGVFVIVVQLKLWLYWKATGQLRREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISL

Query:  FCFSAIVFAASKFILCGF
          FSAIVFAASKFILC F
Subjt:  FCFSAIVFAASKFILCGF

TrEMBL top hitse value%identityAlignment
A0A0A0L2U7 Uncharacterized protein8.8e-10689.95Show/hide
Query:  MAESKDS-GVHIVEIPVQHENHTQNQTLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTS
        MAE+KDS   HIVEIPV+ ENHTQN  LMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCC+FFLFHALSLTLLYTS
Subjt:  MAESKDS-GVHIVEIPVQHENHTQNQTLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTS

Query:  SDPNVCKKWWVPAVAMGATSGVFVIVVQLKLWLYWKATGQLRREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITIS
        SDP VCKKWWVPAV +GATSGVFVIVVQLKLW+YWKA GQL++EK+ENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITIS
Subjt:  SDPNVCKKWWVPAVAMGATSGVFVIVVQLKLWLYWKATGQLRREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITIS

Query:  LFCFSAIVFAASKFILCGF
        L  FSAI+F  SKFILCGF
Subjt:  LFCFSAIVFAASKFILCGF

A0A1S3BL81 uncharacterized protein LOC1034910493.9e-10690.87Show/hide
Query:  MAESKDS-GVHIVEIPVQHENHTQNQTLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTS
        MA++KDS   HIVEIPV+ ENHTQN  LMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCC+FFLFHALSLTLLYTS
Subjt:  MAESKDS-GVHIVEIPVQHENHTQNQTLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTS

Query:  SDPNVCKKWWVPAVAMGATSGVFVIVVQLKLWLYWKATGQLRREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITIS
        SDP VCKKWWVPAV +GATSGVFVIVVQLKLW+YWKA GQL+REKSENRALTRC QELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFI IS
Subjt:  SDPNVCKKWWVPAVAMGATSGVFVIVVQLKLWLYWKATGQLRREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITIS

Query:  LFCFSAIVFAASKFILCGF
        L  FSAIVFAASKFILCGF
Subjt:  LFCFSAIVFAASKFILCGF

A0A5A7VJ68 Uncharacterized protein3.7e-7293.24Show/hide
Query:  MESLKQQIFQLCCYFFLFHALSLTLLYTSSDPNVCKKWWVPAVAMGATSGVFVIVVQLKLWLYWKATGQLRREKSENRALTRCVQELRMKGSCFNLSKEP
        MESLKQQIFQLCC+FFLFHALSLTLLYTSSDP VCKKWWVPAV +GATSGVFVIVVQLKLW+YWKA GQL+REKSENRALTRCVQELRMKGSCFNLSKEP
Subjt:  MESLKQQIFQLCCYFFLFHALSLTLLYTSSDPNVCKKWWVPAVAMGATSGVFVIVVQLKLWLYWKATGQLRREKSENRALTRCVQELRMKGSCFNLSKEP

Query:  QIGNRMKSSSVEIKWGPLTWFSRNFITISLFCFSAIVFAASKFILCGF
        QIGNRMKSSSVEIKWGPLTWFSRNFI ISL  FSAIVFAASKFILCGF
Subjt:  QIGNRMKSSSVEIKWGPLTWFSRNFITISLFCFSAIVFAASKFILCGF

A0A6J1EWB5 uncharacterized protein LOC1114387096.7e-9884.79Show/hide
Query:  ESKDSG--VHIVEIPVQHENHTQNQTLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTSS
        E+KDSG   H+VEIP       +NQ +MISVI+ HPLRQISESSGHLLLLKLWQR+EHLFGLRIGRRETK+ESLKQQIFQLCCYFFLFHALSLTLL+TSS
Subjt:  ESKDSG--VHIVEIPVQHENHTQNQTLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTSS

Query:  DPNVCKKWWVPAVAMGATSGVFVIVVQLKLWLYWKATGQLRREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISL
        DPNVC KWWVP VAMGATSGVFVIVVQLKLWLYWKA+ QL+REKSENRALTRCVQELRMKGSCFNLSKEPQIG+RMKSSSVEIKWGPLT  SRNF+TI L
Subjt:  DPNVCKKWWVPAVAMGATSGVFVIVVQLKLWLYWKATGQLRREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISL

Query:  FCFSAIVFAASKFILCG
         CFS IVF ASKFILCG
Subjt:  FCFSAIVFAASKFILCG

A0A6J1HN07 uncharacterized protein LOC1114651141.8e-9885.25Show/hide
Query:  ESKDSG--VHIVEIPVQHENHTQNQTLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTSS
        E+KDSG   HIVEIP       +NQ +MISVI+ HPLRQISESSGHLLLLKLWQR+EHLFGLRIGRRETK+ESLKQQIFQLCCYFFLFHALSLTLL+TSS
Subjt:  ESKDSG--VHIVEIPVQHENHTQNQTLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTSS

Query:  DPNVCKKWWVPAVAMGATSGVFVIVVQLKLWLYWKATGQLRREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISL
        DPNVC KWWVP VAMGATSGVFVIVVQLKLWLYWKA+ QL+REKSENRALTR VQELRMKGSCFNLSKEPQIG+RMKSSSVEIKWGPLTW SRNF+TI L
Subjt:  DPNVCKKWWVPAVAMGATSGVFVIVVQLKLWLYWKATGQLRREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISL

Query:  FCFSAIVFAASKFILCG
         CFS IVF ASKFILCG
Subjt:  FCFSAIVFAASKFILCG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G12870.1 unknown protein4.0e-2636.32Show/hide
Query:  HPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLY-------TSSDPNVCKKWWVPAVAMGATSGVFVIVVQ
        HPL QI+++  H LLLK W ++E L   R+  +E++++S++++I QL  +FFLFH++SL LL+       +S+  + CK+ W+P++    +S   +  V+
Subjt:  HPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLY-------TSSDPNVCKKWWVPAVAMGATSGVFVIVVQ

Query:  LKLWLYWKATGQLRREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPL-TWFSRNFITISLFCFSAIVFAASKFILC
         K  +       L REK + + L +CV+EL+ KG  F+L KE     R KS  VE K  P+  W +R+F+T+  F  S +V A  + ILC
Subjt:  LKLWLYWKATGQLRREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPL-TWFSRNFITISLFCFSAIVFAASKFILC

AT5G56120.1 unknown protein6.3e-6454.2Show/hide
Query:  MAESKDSGVHIVEIPV--QHENHTQNQTL---------MISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFH
        MA +KDS  H+VEIPV  +H+   Q Q L         ++ VIQ HPL +ISES GHLLLLKLWQR+E LF  R+  +E+++ES+K++IFQLCC+F +FH
Subjt:  MAESKDSGVHIVEIPV--QHENHTQNQTL---------MISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFH

Query:  ALSLTLLYTSSDPN---------VCKKWWVPAVAMGATSGVFVIVVQLKLWLYWKATGQLRREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSS
            TL+Y+SS  +         VCKKWW+P+    ATS V V +VQ KL+++WK    + RE+++NR LTRCV ELRMKGS F+LSKEP  G RMKSSS
Subjt:  ALSLTLLYTSSDPN---------VCKKWWVPAVAMGATSGVFVIVVQLKLWLYWKATGQLRREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSS

Query:  VEIKWGPLTWFSRNFITISLFCFSAIVFAASKFILCGF
        VEIKW P+TWFS+  ITI L C + + F  SKFILCGF
Subjt:  VEIKWGPLTWFSRNFITISLFCFSAIVFAASKFILCGF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGAATCCAAAGATTCAGGCGTCCACATAGTTGAAATCCCAGTACAACACGAAAACCACACTCAGAATCAAACCCTTATGATCTCTGTAATTCAACACCACCCATT
GAGGCAAATTTCCGAAAGCTCTGGTCATTTATTACTCTTGAAGCTTTGGCAACGAGACGAGCATCTCTTCGGTCTTCGAATCGGACGTCGAGAGACCAAAATGGAGTCTT
TAAAGCAACAGATCTTCCAACTCTGTTGCTACTTCTTCCTCTTCCATGCCCTCTCTCTTACTCTCTTGTACACTTCTTCTGATCCCAATGTGTGCAAAAAATGGTGGGTT
CCGGCCGTGGCAATGGGGGCAACGTCGGGGGTGTTCGTGATCGTTGTGCAGCTGAAATTGTGGCTGTATTGGAAGGCAACAGGGCAGTTACGGAGGGAGAAGAGTGAGAA
CAGAGCACTTACAAGATGTGTTCAAGAACTTAGAATGAAAGGTTCTTGTTTTAATTTGTCTAAAGAGCCTCAAATTGGTAATAGGATGAAGAGTTCTAGTGTGGAGATTA
AATGGGGGCCTCTCACTTGGTTTTCTAGAAATTTCATCACCATTTCTCTTTTTTGCTTTTCTGCCATTGTTTTTGCTGCTTCAAAGTTCATACTTTGTGGCTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGAATCCAAAGATTCAGGCGTCCACATAGTTGAAATCCCAGTACAACACGAAAACCACACTCAGAATCAAACCCTTATGATCTCTGTAATTCAACACCACCCATT
GAGGCAAATTTCCGAAAGCTCTGGTCATTTATTACTCTTGAAGCTTTGGCAACGAGACGAGCATCTCTTCGGTCTTCGAATCGGACGTCGAGAGACCAAAATGGAGTCTT
TAAAGCAACAGATCTTCCAACTCTGTTGCTACTTCTTCCTCTTCCATGCCCTCTCTCTTACTCTCTTGTACACTTCTTCTGATCCCAATGTGTGCAAAAAATGGTGGGTT
CCGGCCGTGGCAATGGGGGCAACGTCGGGGGTGTTCGTGATCGTTGTGCAGCTGAAATTGTGGCTGTATTGGAAGGCAACAGGGCAGTTACGGAGGGAGAAGAGTGAGAA
CAGAGCACTTACAAGATGTGTTCAAGAACTTAGAATGAAAGGTTCTTGTTTTAATTTGTCTAAAGAGCCTCAAATTGGTAATAGGATGAAGAGTTCTAGTGTGGAGATTA
AATGGGGGCCTCTCACTTGGTTTTCTAGAAATTTCATCACCATTTCTCTTTTTTGCTTTTCTGCCATTGTTTTTGCTGCTTCAAAGTTCATACTTTGTGGCTTTTAA
Protein sequenceShow/hide protein sequence
MAESKDSGVHIVEIPVQHENHTQNQTLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTSSDPNVCKKWWV
PAVAMGATSGVFVIVVQLKLWLYWKATGQLRREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISLFCFSAIVFAASKFILCGF