; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi05G005210 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G005210
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionA2L_zn_ribbon domain-containing protein
Genome locationchr05:6525408..6527612
RNA-Seq ExpressionLsi05G005210
SyntenyLsi05G005210
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR014900 - Viral late gene transcription factor 3 , zinc ribbon


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6596745.1 hypothetical protein SDJN03_09925, partial [Cucurbita argyrosperma subsp. sororia]4.8e-3470.73Show/hide
Query:  MEALPVPPISNPLFPF------TLRRSSTFPLKPRSISIQNRRRTAAFAAIDGASL----APDPSQVEITWQIFVGAIAGVTPFVVAGIEFSKRIIAQKR
        MEAL   PIS   F F      +LR  S+FPL  RS S+  RRRT  FAAIDGASL    A DP+QVEITWQI VGAIAGVTPFVVAGIEFSKRI+AQKR
Subjt:  MEALPVPPISNPLFPF------TLRRSSTFPLKPRSISIQNRRRTAAFAAIDGASL----APDPSQVEITWQIFVGAIAGVTPFVVAGIEFSKRIIAQKR

Query:  CKECGGSGLVLTNDDYFRCPECG
        CKECGGSGLVL + DYFRCPECG
Subjt:  CKECGGSGLVLTNDDYFRCPECG

KAG7028282.1 hypothetical protein SDJN02_09463, partial [Cucurbita argyrosperma subsp. argyrosperma]4.8e-3470.73Show/hide
Query:  MEALPVPPISNPLFPF------TLRRSSTFPLKPRSISIQNRRRTAAFAAIDGASL----APDPSQVEITWQIFVGAIAGVTPFVVAGIEFSKRIIAQKR
        MEAL   PIS   F F      +LR  S+FPL  RS S+  RRRT  FAAIDGASL    A DP+QVEITWQI VGAIAGVTPFVVAGIEFSKRI+AQKR
Subjt:  MEALPVPPISNPLFPF------TLRRSSTFPLKPRSISIQNRRRTAAFAAIDGASL----APDPSQVEITWQIFVGAIAGVTPFVVAGIEFSKRIIAQKR

Query:  CKECGGSGLVLTNDDYFRCPECG
        CKECGGSGLVL + DYFRCPECG
Subjt:  CKECGGSGLVLTNDDYFRCPECG

XP_004149576.1 uncharacterized protein LOC101220311 [Cucumis sativus]1.1e-3879.13Show/hide
Query:  MEALPVPPISNPLFPF-TLRRSSTFPLKPRSISIQNRRRTAAFAAIDGASLAP-DPSQVEITWQIFVGAIAGVTPFVVAGIEFSKRIIAQKRCKECGGSG
        MEAL    +SNPL    TL  S+TFPLKPRS SI NRRRT AFAAIDGASL P D +QV+ITWQIFVGAIAGVTPFVVAGIEFSKRI  QKRCKECGGSG
Subjt:  MEALPVPPISNPLFPF-TLRRSSTFPLKPRSISIQNRRRTAAFAAIDGASLAP-DPSQVEITWQIFVGAIAGVTPFVVAGIEFSKRIIAQKRCKECGGSG

Query:  LVLTNDDYFRCPECG
        LVL +DDYFRCPECG
Subjt:  LVLTNDDYFRCPECG

XP_008449071.1 PREDICTED: uncharacterized protein LOC103491051 [Cucumis melo]4.0e-3678.26Show/hide
Query:  MEALPVPPISNPLFPF-TLRRSSTFPLKPRSISIQNRRRTAAFAAIDGA-SLAPDPSQVEITWQIFVGAIAGVTPFVVAGIEFSKRIIAQKRCKECGGSG
        MEAL    ISNPL    TLRRS     KPRS S+ NRRRT AFAAIDGA SLA D +QVEITWQIFVGAIAGVTPFVVAGIEFSKRI+AQKRCKECGGSG
Subjt:  MEALPVPPISNPLFPF-TLRRSSTFPLKPRSISIQNRRRTAAFAAIDGA-SLAPDPSQVEITWQIFVGAIAGVTPFVVAGIEFSKRIIAQKRCKECGGSG

Query:  LVLTNDDYFRCPECG
        LVL +DDYFRCP+CG
Subjt:  LVLTNDDYFRCPECG

XP_038903334.1 uncharacterized protein LOC120089955 [Benincasa hispida]7.7e-4888.5Show/hide
Query:  MEALPVPPISNPLFPFTLRRSSTFPLKPRSISIQNRRRTAAFAAIDGASLAPDPSQVEITWQIFVGAIAGVTPFVVAGIEFSKRIIAQKRCKECGGSGLV
        MEALP+PPISNPLFPF  RRSSTFPLKPRS SIQNRRRTA +AAIDGASL  D  QVEITWQIFVGAIAGVTPFVVAGIEFSKRI+AQKRCKECGGSGLV
Subjt:  MEALPVPPISNPLFPFTLRRSSTFPLKPRSISIQNRRRTAAFAAIDGASLAPDPSQVEITWQIFVGAIAGVTPFVVAGIEFSKRIIAQKRCKECGGSGLV

Query:  LTNDDYFRCPECG
        L +DDYFRCPECG
Subjt:  LTNDDYFRCPECG

TrEMBL top hitse value%identityAlignment
A0A0A0L7H1 Uncharacterized protein5.4e-3979.13Show/hide
Query:  MEALPVPPISNPLFPF-TLRRSSTFPLKPRSISIQNRRRTAAFAAIDGASLAP-DPSQVEITWQIFVGAIAGVTPFVVAGIEFSKRIIAQKRCKECGGSG
        MEAL    +SNPL    TL  S+TFPLKPRS SI NRRRT AFAAIDGASL P D +QV+ITWQIFVGAIAGVTPFVVAGIEFSKRI  QKRCKECGGSG
Subjt:  MEALPVPPISNPLFPF-TLRRSSTFPLKPRSISIQNRRRTAAFAAIDGASLAP-DPSQVEITWQIFVGAIAGVTPFVVAGIEFSKRIIAQKRCKECGGSG

Query:  LVLTNDDYFRCPECG
        LVL +DDYFRCPECG
Subjt:  LVLTNDDYFRCPECG

A0A1S3BLU9 uncharacterized protein LOC1034910511.9e-3678.26Show/hide
Query:  MEALPVPPISNPLFPF-TLRRSSTFPLKPRSISIQNRRRTAAFAAIDGA-SLAPDPSQVEITWQIFVGAIAGVTPFVVAGIEFSKRIIAQKRCKECGGSG
        MEAL    ISNPL    TLRRS     KPRS S+ NRRRT AFAAIDGA SLA D +QVEITWQIFVGAIAGVTPFVVAGIEFSKRI+AQKRCKECGGSG
Subjt:  MEALPVPPISNPLFPF-TLRRSSTFPLKPRSISIQNRRRTAAFAAIDGA-SLAPDPSQVEITWQIFVGAIAGVTPFVVAGIEFSKRIIAQKRCKECGGSG

Query:  LVLTNDDYFRCPECG
        LVL +DDYFRCP+CG
Subjt:  LVLTNDDYFRCPECG

A0A6J1DN65 uncharacterized protein LOC1110221352.1e-2764.35Show/hide
Query:  MEALPVPPISNPLFPFTLRRSSTFPLKPRSISIQNRRRTAAFAAIDGAS--LAPDPSQVEITWQIFVGAIAGVTPFVVAGIEFSKRIIAQKRCKECGGSG
        MEAL   PISN LF FT         KP + SI NRR     AAI+ A+     DPSQ++ITWQI VGAIAGVTPFVVAGIEF+KRI+AQ+RC+ECGGSG
Subjt:  MEALPVPPISNPLFPFTLRRSSTFPLKPRSISIQNRRRTAAFAAIDGAS--LAPDPSQVEITWQIFVGAIAGVTPFVVAGIEFSKRIIAQKRCKECGGSG

Query:  LVLTNDDYFRCPECG
        LVL  DDYFRCP+CG
Subjt:  LVLTNDDYFRCPECG

A0A6J1FBA7 uncharacterized protein LOC1114422628.9e-3471.07Show/hide
Query:  MEALPVPPISNPL-FPFTLRRS----STFPLKPRSISIQNRRRTAAFAAIDGASL---APDPSQVEITWQIFVGAIAGVTPFVVAGIEFSKRIIAQKRCK
        MEAL +P  ++P  FP T   S    S FPL  RS S+  RRRT  FAAIDGASL   A DP+QVEITWQI VGAIAGVTPFVVAGIEFSKRI+AQKRCK
Subjt:  MEALPVPPISNPL-FPFTLRRS----STFPLKPRSISIQNRRRTAAFAAIDGASL---APDPSQVEITWQIFVGAIAGVTPFVVAGIEFSKRIIAQKRCK

Query:  ECGGSGLVLTNDDYFRCPECG
        ECGGSGLVL + DYFRCPECG
Subjt:  ECGGSGLVLTNDDYFRCPECG

A0A6J1L2M2 uncharacterized protein LOC1114985371.5e-3370.49Show/hide
Query:  MEALPVPPISNPLFPF------TLRRSSTFPLKPRSISIQNRRRTAAFAAIDGASL---APDPSQVEITWQIFVGAIAGVTPFVVAGIEFSKRIIAQKRC
        MEAL   PIS   F F      + R  S FPL  RS S+  RRRT  FAAIDGASL   A DP+QVEITWQI VGAIAGVTPFVVAGIEFSKRI+AQKRC
Subjt:  MEALPVPPISNPLFPF------TLRRSSTFPLKPRSISIQNRRRTAAFAAIDGASL---APDPSQVEITWQIFVGAIAGVTPFVVAGIEFSKRIIAQKRC

Query:  KECGGSGLVLTNDDYFRCPECG
        KECGGSGLVL + DYFRCPECG
Subjt:  KECGGSGLVLTNDDYFRCPECG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G55570.1 unknown protein1.4e-2359.04Show/hide
Query:  ISIQNRRRTAAFAAIDGASLAPDPSQVEITWQIFVGAIAGVTPFVVAGIEFSKRIIAQKRCKECGGSGLVLTNDDYFRCPECG
        +++ NRR     A  + A    +  + EITWQI VG IAG+ PFVVAG+EFSKRIIAQKRC+ECGG+GLV  +  YFRCPECG
Subjt:  ISIQNRRRTAAFAAIDGASLAPDPSQVEITWQIFVGAIAGVTPFVVAGIEFSKRIIAQKRCKECGGSGLVLTNDDYFRCPECG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGCTTTACCCGTACCCCCAATTTCTAATCCTCTTTTCCCATTCACTCTTCGTCGTTCCAGTACTTTTCCCCTCAAACCGCGCTCAATTTCGATCCAAAATCGAAG
ACGAACAGCCGCGTTTGCTGCCATTGACGGCGCTTCGCTTGCACCCGACCCCTCTCAGGTCGAAATCACTTGGCAAATTTTCGTCGGAGCGATTGCTGGAGTGACTCCGT
TTGTGGTGGCCGGAATCGAGTTCAGCAAGAGAATTATTGCGCAAAAGAGATGTAAAGAATGTGGTGGTTCGGGGCTTGTTCTTACAAATGATGACTACTTTCGTTGCCCT
GAATGTGGTAATAGTTTCTTTTTGCATACTGGAGTATTTCTGTTCGTAATTTAG
mRNA sequenceShow/hide mRNA sequence
ATTAACCCCATACTACAGGCAACCACAAGTGAAATTGGTGGTTGGCGCGAATTAGACCGAAAACGTGACGTGTCCAAACGTAGACCGGCCTAAGCCGATCCACCCGAACC
ACTTCCTCCGCTATTTCCCTCTTGCTCTCTCCCTTCTGCAACCCAATCATGGAAGCTTTACCCGTACCCCCAATTTCTAATCCTCTTTTCCCATTCACTCTTCGTCGTTC
CAGTACTTTTCCCCTCAAACCGCGCTCAATTTCGATCCAAAATCGAAGACGAACAGCCGCGTTTGCTGCCATTGACGGCGCTTCGCTTGCACCCGACCCCTCTCAGGTCG
AAATCACTTGGCAAATTTTCGTCGGAGCGATTGCTGGAGTGACTCCGTTTGTGGTGGCCGGAATCGAGTTCAGCAAGAGAATTATTGCGCAAAAGAGATGTAAAGAATGT
GGTGGTTCGGGGCTTGTTCTTACAAATGATGACTACTTTCGTTGCCCTGAATGTGGTAATAGTTTCTTTTTGCATACTGGAGTATTTCTGTTCGTAATTTAGGGATAGTT
TTTTTTAGAGTGTTTCTATAACCATTGCAAGATGTGAGAAATACATCCTTAACTAAGGTTAGAGGTTTGTTTTGAATTTGAATCATCATCATGAACTGAAAAAGAAGTGT
TGTCAATGAATATTTGTGGAAAAAAATCATATTAAATATTTAAATGAACAAATAAGCTTATTATTAATCAATTTTAACTTTTTCATTCAGGTAAAGCATTAAATTTAAAA
TTGTCAACCATTAGTGTGATTAAATTAAATTGAAACACTTATAAAAAATTGATAAATGTTTAGCTATAATGTTTTAACTCTTTATTCCAAATAAGAAACATTTATAAGTA
ATATGGTATTTTGTAACTTTTGCTATAAACAAAGTCGAAAAACAAACTAAAAAGAGTACAGCTTAAGACTAACATAAGCTATAAACAATGTTGAAAAAGAAACTAAAAAT
CTTTAATGGGTTTGGTTTAGTTTTCAAGTGACCATTATATAGCAAAACAGCAGTAGCAAGACCACCGATTAGCACCCCACTGCCGTCCATAGAGGTGTGAAAATAATGCT
TTAATTCCCAGCCGTCTGATTTCAGGACCTTTCAACCACTGCCTACGGACAACCTTCTCTTCCATTCCGATTTTAGCCTAAGAACTAGAGAGTGCCGAGGGAGAAAGGGG
CTGGATGTGTGATTGAAGGAAAGGGAAGGGAACGACCATGAAAGGGAGAGATTAAAGAAAGAAATTGAGTAAAATAGATTCAATTTTCATATTTACAGAGATTGAGGGTT
TGATTTTGACATTTATTAAAGTTTGAAGGTTGGGTCTAATTTTTCAATGGAAAGTTTAGGGGTTCAATTGTTATCTACCACCATATTTCATAGATGGTTTTTGCAATTTG
CCCCAAAAAAACATGAGTTCTTCCTTGTTTTCGACACTTATCGGTTGGACAGGTGGTTTTTTGCCATGGCAGTCATGGAGGCGATTCTTTTGGGGCTAAAGAAGACAGTT
AGCATGATATGTCTCTTTTGAAAGCTGTATAATTCCACATATTTCAAAGAAAATGGTTCAGGATCTTCTTTGTTGATTTCCAGGCAAGACGAGCAACAAAGGAAGCAATC
TATTCGTTGAGTGTATGTACTTGAGGTATATAACTATTTACAAGTTCACCAAGTTTTTATTAATTACATGCTCAATCAAATGGTTAAATGTTGCTAGATGATTGTTTCCT
GGTTAGATATCCCTATCGTGCATAGTTTTTGTAATGTCATTTTCTCCCTCAACATAATTTATAACATGTATAAAAAGATTAAACATTCTTTAATCTATCAACTTAAGCTT
CTAAGTTTGATAGTGATTTAATTATACAATAAAGCTAGGCCTTTCTTTCCTCCTTGCGTGACGAGCATGTTAAATCAGAAGATTAATTTTGATTGAGTGGGATATTGTGT
AACAAAATTTGTAGTCTCTGGCTGATTTCTATTAGCATCATGTTTTGATGGCAAGAA
Protein sequenceShow/hide protein sequence
MEALPVPPISNPLFPFTLRRSSTFPLKPRSISIQNRRRTAAFAAIDGASLAPDPSQVEITWQIFVGAIAGVTPFVVAGIEFSKRIIAQKRCKECGGSGLVLTNDDYFRCP
ECGNSFFLHTGVFLFVI