CuGenDBv2

Gene ID	Lsi05G005250
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	WRKY transcription factor, putative
Genome location	chr05:6558717..6559016
RNA-Seq Expression	Lsi05G005250
Synteny	Lsi05G005250
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0005634 - nucleus (cellular component) GO:0003700 - DNA-binding transcription factor activity (molecular function) GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domains	IPR044810 - WRKY transcription factor, plant

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6596743.1 putative WRKY transcription factor 20, partial [Cucurbita argyrosperma subsp. sororia]

3.4e-19

78.87

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Query:  MDPTDSDLSDPSHA-------AAAAAAAGAKYKLMSPAKLPISRSPCITIPPGLSPTSFLDSPVLLTNLKV
        MDPTD+DL+DPSHA        ++A+AAGAKYKL+SPAKLPISRSPCITIPPGLSPTSFL+SPVLLTNLKV
Subjt:  MDPTDSDLSDPSHA-------AAAAAAAGAKYKLMSPAKLPISRSPCITIPPGLSPTSFLDSPVLLTNLKV

KAG7028279.1 putative WRKY transcription factor 20 [Cucurbita argyrosperma subsp. argyrosperma]

3.4e-19

78.87

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Query:  MDPTDSDLSDPSHA-------AAAAAAAGAKYKLMSPAKLPISRSPCITIPPGLSPTSFLDSPVLLTNLKV
        MDPTD+DL+DPSHA        ++A+AAGAKYKL+SPAKLPISRSPCITIPPGLSPTSFL+SPVLLTNLKV
Subjt:  MDPTDSDLSDPSHA-------AAAAAAAGAKYKLMSPAKLPISRSPCITIPPGLSPTSFLDSPVLLTNLKV

XP_022933042.1 probable WRKY transcription factor 20 isoform X1 [Cucurbita moschata]

3.4e-19

78.87

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Query:  MDPTDSDLSDPSHA-------AAAAAAAGAKYKLMSPAKLPISRSPCITIPPGLSPTSFLDSPVLLTNLKV
        MDPTD+DL+DPSHA        ++A+AAGAKYKL+SPAKLPISRSPCITIPPGLSPTSFL+SPVLLTNLKV
Subjt:  MDPTDSDLSDPSHA-------AAAAAAAGAKYKLMSPAKLPISRSPCITIPPGLSPTSFLDSPVLLTNLKV

XP_023540444.1 probable WRKY transcription factor 20 isoform X1 [Cucurbita pepo subsp. pepo]

1.0e-18

77.46

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Query:  MDPTDSDLSDPSHA-------AAAAAAAGAKYKLMSPAKLPISRSPCITIPPGLSPTSFLDSPVLLTNLKV
        MDPTD+DL+DPSH         ++A+AAGAKYKL+SPAKLPISRSPCITIPPGLSPTSFL+SPVLLTNLKV
Subjt:  MDPTDSDLSDPSHA-------AAAAAAAGAKYKLMSPAKLPISRSPCITIPPGLSPTSFLDSPVLLTNLKV

XP_038904071.1 probable WRKY transcription factor 20 isoform X1 [Benincasa hispida]

9.6e-22

91.04

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Query:  MDPTDSDLSDPSH---AAAAAAAAGAKYKLMSPAKLPISRSPCITIPPGLSPTSFLDSPVLLTNLKV
        MDPTDSDL+DPSH   +AAAAAA+GAKYKLMSPAKLPISRSPCITIPPGLSPTSFLDSPVLLTNLKV
Subjt:  MDPTDSDLSDPSH---AAAAAAAAGAKYKLMSPAKLPISRSPCITIPPGLSPTSFLDSPVLLTNLKV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L2V1 Uncharacterized protein

1.1e-18

84.38

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Query:  MDPTDSDLSDPSHAAAAAAAAGAKYKLMSPAKLPISRSPCITIPPGLSPTSFLDSPVLLTNLKV
        MDPTDSDL DPS+     A++GAKYKL+SPAKLPISRSPCITIPPGLSPTSFLDSPVLLTNLKV
Subjt:  MDPTDSDLSDPSHAAAAAAAAGAKYKLMSPAKLPISRSPCITIPPGLSPTSFLDSPVLLTNLKV

A0A1S3BKL7 probable WRKY transcription factor 20

1.1e-18

84.38

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Query:  MDPTDSDLSDPSHAAAAAAAAGAKYKLMSPAKLPISRSPCITIPPGLSPTSFLDSPVLLTNLKV
        MDPTDSDL DPS+     A++GAKYKL+SPAKLPISRSPCITIPPGLSPTSFLDSPVLLTNLKV
Subjt:  MDPTDSDLSDPSHAAAAAAAAGAKYKLMSPAKLPISRSPCITIPPGLSPTSFLDSPVLLTNLKV

A0A5D3BE71 Putative WRKY transcription factor 20

1.1e-18

84.38

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Query:  MDPTDSDLSDPSHAAAAAAAAGAKYKLMSPAKLPISRSPCITIPPGLSPTSFLDSPVLLTNLKV
        MDPTDSDL DPS+     A++GAKYKL+SPAKLPISRSPCITIPPGLSPTSFLDSPVLLTNLKV
Subjt:  MDPTDSDLSDPSHAAAAAAAAGAKYKLMSPAKLPISRSPCITIPPGLSPTSFLDSPVLLTNLKV

A0A6J1EYM7 probable WRKY transcription factor 20 isoform X1

1.7e-19

78.87

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Query:  MDPTDSDLSDPSHA-------AAAAAAAGAKYKLMSPAKLPISRSPCITIPPGLSPTSFLDSPVLLTNLKV
        MDPTD+DL+DPSHA        ++A+AAGAKYKL+SPAKLPISRSPCITIPPGLSPTSFL+SPVLLTNLKV
Subjt:  MDPTDSDLSDPSHA-------AAAAAAAGAKYKLMSPAKLPISRSPCITIPPGLSPTSFLDSPVLLTNLKV

A0A6J1KYX1 probable WRKY transcription factor 20 isoform X1

4.8e-19

77.46

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Query:  MDPTDSDLSDPSHA-------AAAAAAAGAKYKLMSPAKLPISRSPCITIPPGLSPTSFLDSPVLLTNLKV
        MDPTD+DL+DPSH         ++A+AAGAKYKL+SPAKLPISRSPCITIPPGLSPTSFL+SPVLLTNLKV
Subjt:  MDPTDSDLSDPSHA-------AAAAAAAGAKYKLMSPAKLPISRSPCITIPPGLSPTSFLDSPVLLTNLKV

SwissProt top hits

e value

%identity

Alignment

Q6VWJ6 WRKY transcription factor SUSIBA2

1.4e-07

72.97

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Query:  MSPAKLPISRSPCITIPPGLSPTSFLDSPVLLTNLKV
        MSPA+LPISR  C+TIP G SP++ LDSPVLLTN KV
Subjt:  MSPAKLPISRSPCITIPPGLSPTSFLDSPVLLTNLKV

Q93WV0 Probable WRKY transcription factor 20

1.2e-11

64.91

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Query:  DLSDPSHAAAAAAAAGAKYKLMSPAKLPISRSPCITIPPGLSPTSFLDSPVLLTNLK
        DL+    +A      GA+YKLMSPAKLPISRS  ITIPPGLSPTSFL+SPV ++N+K
Subjt:  DLSDPSHAAAAAAAAGAKYKLMSPAKLPISRSPCITIPPGLSPTSFLDSPVLLTNLK

Q9C5T3 Probable WRKY transcription factor 26

5.0e-05

51.22

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Query:  KYKLMSPAKLPISRSPCITIPPGLSPTSFLDSPVLLTNLKV
        K+K  +P+ LP+S SP  T+PPGL+P  FLDSP+L T+  +
Subjt:  KYKLMSPAKLPISRSPCITIPPGLSPTSFLDSPVLLTNLKV

Arabidopsis top hits

e value

%identity

Alignment

AT4G26640.2 WRKY family transcription factor family protein

8.7e-13

64.91

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Query:  DLSDPSHAAAAAAAAGAKYKLMSPAKLPISRSPCITIPPGLSPTSFLDSPVLLTNLK
        DL+    +A      GA+YKLMSPAKLPISRS  ITIPPGLSPTSFL+SPV ++N+K
Subjt:  DLSDPSHAAAAAAAAGAKYKLMSPAKLPISRSPCITIPPGLSPTSFLDSPVLLTNLK

AT5G07100.1 WRKY DNA-binding protein 26

3.5e-06

51.22

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Query:  KYKLMSPAKLPISRSPCITIPPGLSPTSFLDSPVLLTNLKV
        K+K  +P+ LP+S SP  T+PPGL+P  FLDSP+L T+  +
Subjt:  KYKLMSPAKLPISRSPCITIPPGLSPTSFLDSPVLLTNLKV

Sequences

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CDS sequence

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ATGGACCCCACTGACTCCGACCTCTCCGATCCATCTCATGCCGCCGCTGCTGCTGCTGCTGCTGGCGCTAAGTACAAGCTCATGTCTCCGGCCAAGCTTCCGATCTCTAG
GTCCCCTTGCATTACCATCCCTCCTGGCCTCAGTCCCACTTCTTTTCTTGACTCTCCTGTTCTGCTTACTAACTTAAAGGTTCCTTTCTTTTTCTCGCTTCTATTCTTGG
ATTTTGTTGTTTGGATTTTTAATTGTTGGGTGAAGTTTTTTTGGAATTTGGGGACGAGGGTTTCGATTGGATTTTGTTAA

mRNA sequence

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Protein sequence

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MDPTDSDLSDPSHAAAAAAAAGAKYKLMSPAKLPISRSPCITIPPGLSPTSFLDSPVLLTNLKVPFFFSLLFLDFVVWIFNCWVKFFWNLGTRVSIGFC

Lsi05G005250 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome