; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi05G005340 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G005340
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionPectin lyase-like superfamily protein
Genome locationchr05:6667272..6667697
RNA-Seq ExpressionLsi05G005340
SyntenyLsi05G005340
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0004650 - polygalacturonase activity (molecular function)
InterPro domainsIPR000743 - Glycoside hydrolase, family 28
IPR011050 - Pectin lyase fold/virulence factor
IPR012334 - Pectin lyase fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_016900599.1 PREDICTED: exopolygalacturonase-like [Cucumis melo]2.4e-3065.49Show/hide
Query:  ILLLLPLLPPSTHVGIHISSSSGTNIMHLVISTADNCISLNPESKFINITSVQCGFGYRISIGSLRKYPNEEDVFEVTTRYSTFVGTSNIVRIKSWSSLY
        + ++ P   P+T  GIH+S SSG NIMH  I T D+CISL P SKFINIT+VQCG G+ ISIGSL KYPNEEDVFEVT R STF+GT+N  RIK+WSS Y
Subjt:  ILLLLPLLPPSTHVGIHISSSSGTNIMHLVISTADNCISLNPESKFINITSVQCGFGYRISIGSLRKYPNEEDVFEVTTRYSTFVGTSNIVRIKSWSSLY

Query:  SSIVSKAAYLNLQ
        S++VSK  +LNLQ
Subjt:  SSIVSKAAYLNLQ

XP_031738767.1 exopolygalacturonase [Cucumis sativus]1.9e-3269.03Show/hide
Query:  ILLLLPLLPPSTHVGIHISSSSGTNIMHLVISTADNCISLNPESKFINITSVQCGFGYRISIGSLRKYPNEEDVFEVTTRYSTFVGTSNIVRIKSWSSLY
        + ++ P   P+T  GIHISSSSG NIMH  I T D+CISL P SKFINIT++QCG G+ ISIGSL KYPNEEDVFEVT R STF+GTSN VRIK+WSS Y
Subjt:  ILLLLPLLPPSTHVGIHISSSSGTNIMHLVISTADNCISLNPESKFINITSVQCGFGYRISIGSLRKYPNEEDVFEVTTRYSTFVGTSNIVRIKSWSSLY

Query:  SSIVSKAAYLNLQ
        SS+VSK  +LNLQ
Subjt:  SSIVSKAAYLNLQ

XP_038904214.1 exopolygalacturonase-like [Benincasa hispida]8.7e-3370.8Show/hide
Query:  ILLLLPLLPPSTHVGIHISSSSGTNIMHLVISTADNCISLNPESKFINITSVQCGFGYRISIGSLRKYPNEEDVFEVTTRYSTFVGTSNIVRIKSWSSLY
        + ++ P   P+T  GIHISSSSG NIMH VIST D+CISL P SKFINIT++QCG G+ ISIGSL KYPNEEDVFEVT R S F+GTSN VRIKSWSS Y
Subjt:  ILLLLPLLPPSTHVGIHISSSSGTNIMHLVISTADNCISLNPESKFINITSVQCGFGYRISIGSLRKYPNEEDVFEVTTRYSTFVGTSNIVRIKSWSSLY

Query:  SSIVSKAAYLNLQ
        SS+VSK +Y NLQ
Subjt:  SSIVSKAAYLNLQ

XP_038904215.1 exopolygalacturonase-like [Benincasa hispida]1.9e-3270.8Show/hide
Query:  ILLLLPLLPPSTHVGIHISSSSGTNIMHLVISTADNCISLNPESKFINITSVQCGFGYRISIGSLRKYPNEEDVFEVTTRYSTFVGTSNIVRIKSWSSLY
        + ++ P   P+T  GIHISSSSG NIMH VI T D+CISL P SKFINIT+VQCG G+ ISIGSL KYPNEEDVFEVT R STF+GTSN VRIKSWSS Y
Subjt:  ILLLLPLLPPSTHVGIHISSSSGTNIMHLVISTADNCISLNPESKFINITSVQCGFGYRISIGSLRKYPNEEDVFEVTTRYSTFVGTSNIVRIKSWSSLY

Query:  SSIVSKAAYLNLQ
        SS+VS   +LNLQ
Subjt:  SSIVSKAAYLNLQ

XP_038904218.1 exopolygalacturonase-like [Benincasa hispida]4.3e-3268.14Show/hide
Query:  ILLLLPLLPPSTHVGIHISSSSGTNIMHLVISTADNCISLNPESKFINITSVQCGFGYRISIGSLRKYPNEEDVFEVTTRYSTFVGTSNIVRIKSWSSLY
        + ++ P   P+T  GIHISSSSG NIMH +I T D+CISL P SKFINIT+V+CG G+ ISIGSL KYPNEED+FEVT R STF+GTSN VRIKSW S Y
Subjt:  ILLLLPLLPPSTHVGIHISSSSGTNIMHLVISTADNCISLNPESKFINITSVQCGFGYRISIGSLRKYPNEEDVFEVTTRYSTFVGTSNIVRIKSWSSLY

Query:  SSIVSKAAYLNLQ
        SS+VSK  Y+NLQ
Subjt:  SSIVSKAAYLNLQ

TrEMBL top hitse value%identityAlignment
A0A0A0L7H9 Uncharacterized protein9.4e-3369.03Show/hide
Query:  ILLLLPLLPPSTHVGIHISSSSGTNIMHLVISTADNCISLNPESKFINITSVQCGFGYRISIGSLRKYPNEEDVFEVTTRYSTFVGTSNIVRIKSWSSLY
        + ++ P   P+T  GIHISSSSG NIMH  I T D+CISL P SKFINIT++QCG G+ ISIGSL KYPNEEDVFEVT R STF+GTSN VRIK+WSS Y
Subjt:  ILLLLPLLPPSTHVGIHISSSSGTNIMHLVISTADNCISLNPESKFINITSVQCGFGYRISIGSLRKYPNEEDVFEVTTRYSTFVGTSNIVRIKSWSSLY

Query:  SSIVSKAAYLNLQ
        SS+VSK  +LNLQ
Subjt:  SSIVSKAAYLNLQ

A0A1S4DX91 exopolygalacturonase-like1.1e-3065.49Show/hide
Query:  ILLLLPLLPPSTHVGIHISSSSGTNIMHLVISTADNCISLNPESKFINITSVQCGFGYRISIGSLRKYPNEEDVFEVTTRYSTFVGTSNIVRIKSWSSLY
        + ++ P   P+T  GIH+S SSG NIMH  I T D+CISL P SKFINIT+VQCG G+ ISIGSL KYPNEEDVFEVT R STF+GT+N  RIK+WSS Y
Subjt:  ILLLLPLLPPSTHVGIHISSSSGTNIMHLVISTADNCISLNPESKFINITSVQCGFGYRISIGSLRKYPNEEDVFEVTTRYSTFVGTSNIVRIKSWSSLY

Query:  SSIVSKAAYLNLQ
        S++VSK  +LNLQ
Subjt:  SSIVSKAAYLNLQ

A0A5D3B9J1 Exopolygalacturonase-like1.5e-3065.49Show/hide
Query:  ILLLLPLLPPSTHVGIHISSSSGTNIMHLVISTADNCISLNPESKFINITSVQCGFGYRISIGSLRKYPNEEDVFEVTTRYSTFVGTSNIVRIKSWSSLY
        + ++ P   P+T  GIH+S SSG NIMH  I T D+CISL P SKFINIT+VQCG G+ ISIGSL KYPNEEDVFEVT R STF+GT+N  RIK+WSS Y
Subjt:  ILLLLPLLPPSTHVGIHISSSSGTNIMHLVISTADNCISLNPESKFINITSVQCGFGYRISIGSLRKYPNEEDVFEVTTRYSTFVGTSNIVRIKSWSSLY

Query:  SSIVSKAAYLNLQ
        S++VSK  +LNLQ
Subjt:  SSIVSKAAYLNLQ

A0A6J1EW42 exopolygalacturonase-like1.5e-3065.49Show/hide
Query:  ILLLLPLLPPSTHVGIHISSSSGTNIMHLVISTADNCISLNPESKFINITSVQCGFGYRISIGSLRKYPNEEDVFEVTTRYSTFVGTSNIVRIKSWSSLY
        + ++ P   P+T   IH+S+SSG NIMH VI T D+CISL P SKFIN+T VQCG G+ ISIGSL KYPNEEDV EVT R STFVGT+N VRIK+WSS +
Subjt:  ILLLLPLLPPSTHVGIHISSSSGTNIMHLVISTADNCISLNPESKFINITSVQCGFGYRISIGSLRKYPNEEDVFEVTTRYSTFVGTSNIVRIKSWSSLY

Query:  SSIVSKAAYLNLQ
        SS+VSK A++NLQ
Subjt:  SSIVSKAAYLNLQ

A0A6J1F153 exopolygalacturonase-like2.6e-3066.37Show/hide
Query:  ILLLLPLLPPSTHVGIHISSSSGTNIMHLVISTADNCISLNPESKFINITSVQCGFGYRISIGSLRKYPNEEDVFEVTTRYSTFVGTSNIVRIKSWSSLY
        + ++ P   P+T  GIH+S SSG NIMH VI T D+CISL P SKFINIT +QCG G+ ISIGSL KYPNEEDV EVT R STFVGT N VRIK+WSS +
Subjt:  ILLLLPLLPPSTHVGIHISSSSGTNIMHLVISTADNCISLNPESKFINITSVQCGFGYRISIGSLRKYPNEEDVFEVTTRYSTFVGTSNIVRIKSWSSLY

Query:  SSIVSKAAYLNLQ
        SS VSK A+LNL+
Subjt:  SSIVSKAAYLNLQ

SwissProt top hitse value%identityAlignment
P24548 Exopolygalacturonase (Fragment)3.5e-1651.22Show/hide
Query:  GIHISSSSGTNIMHLVISTADNCISLNPESKFINITSVQCGFGYRISIGSLRKYPNEEDVFEVTTRYSTFVGTSNIVRIKSW
        GIHI  S G NI++  I T D+CISL   SK INIT++ CG G+ IS+GSL +Y NEE V  +  +  T  G+ N VRIK+W
Subjt:  GIHISSSSGTNIMHLVISTADNCISLNPESKFINITSVQCGFGYRISIGSLRKYPNEEDVFEVTTRYSTFVGTSNIVRIKSW

P26216 Exopolygalacturonase2.1e-1343Show/hide
Query:  GIHISSSSGTNIMHLVISTADNCISLNPESKFINITSVQCGFGYRISIGSLRKYPNEEDVFEVTTRYSTFVGTSNIVRIKSWSSLYSSI-VSKAAYLNLQ
        GIH+  SSG  I + VI   D+CIS+ P +  +NIT V CG G+ ISIGSL +Y +E+DV ++  +  T   T   VRIK++    S + VSK  Y N++
Subjt:  GIHISSSSGTNIMHLVISTADNCISLNPESKFINITSVQCGFGYRISIGSLRKYPNEEDVFEVTTRYSTFVGTSNIVRIKSWSSLYSSI-VSKAAYLNLQ

P35339 Exopolygalacturonase2.5e-1443Show/hide
Query:  GIHISSSSGTNIMHLVISTADNCISLNPESKFINITSVQCGFGYRISIGSLRKYPNEEDVFEVTTRYSTFVGTSNIVRIKSWSSLYSSI-VSKAAYLNLQ
        GIH+  SSG  I + VI   D+CIS+ P +  +NIT V CG G+ ISIGSL +Y +E+DV ++  +  T   T+N VRIK++    S +  SK  Y N++
Subjt:  GIHISSSSGTNIMHLVISTADNCISLNPESKFINITSVQCGFGYRISIGSLRKYPNEEDVFEVTTRYSTFVGTSNIVRIKSWSSLYSSI-VSKAAYLNLQ

Q05967 Polygalacturonase1.2e-1344Show/hide
Query:  PLLPPSTHVGIHISSSSGTNIMHLVISTADNCISLNPESKFINITSVQCGFGYRISIGSLRKYPNEEDVFEVTTRYSTFVGTSNIVRIKSWSSLYSSIVS
        P   P+T  GIH+S SS  NI     ST D+CIS+  E++ + IT V CG G+ IS+GSL   P+E+ V  V  R  TF  T N VRIK+W + +  +V+
Subjt:  PLLPPSTHVGIHISSSSGTNIMHLVISTADNCISLNPESKFINITSVQCGFGYRISIGSLRKYPNEEDVFEVTTRYSTFVGTSNIVRIKSWSSLYSSIVS

Q6H9K0 Exopolygalacturonase (Fragment)1.3e-1548.78Show/hide
Query:  GIHISSSSGTNIMHLVISTADNCISLNPESKFINITSVQCGFGYRISIGSLRKYPNEEDVFEVTTRYSTFVGTSNIVRIKSW
        GIH+  S G  I +  I+T D+CIS+ P S+ + IT V CG G+ ISIGSL +Y NE++V  +T +  TF GT N VR+K+W
Subjt:  GIHISSSSGTNIMHLVISTADNCISLNPESKFINITSVQCGFGYRISIGSLRKYPNEEDVFEVTTRYSTFVGTSNIVRIKSW

Arabidopsis top hitse value%identityAlignment
AT2G43870.1 Pectin lyase-like superfamily protein6.7e-1549.4Show/hide
Query:  GIHISSSSGTNIMHLVISTADNCISLNPESKFINITSVQCGFGYRISIGSLRKYPNEEDVFEVTTRYSTFVGTSNIVRIKSWS
        GIH+ SSS  +I +  IST D+C+S+ P +  + I +V CG G+ ISIGSL K   E  V  VT +  TF GT N VRIKSW+
Subjt:  GIHISSSSGTNIMHLVISTADNCISLNPESKFINITSVQCGFGYRISIGSLRKYPNEEDVFEVTTRYSTFVGTSNIVRIKSWS

AT2G43880.1 Pectin lyase-like superfamily protein3.0e-1543.36Show/hide
Query:  SILLLLPLLPPSTHVGIHISSSSGTNIMHLVISTADNCISLNPESKFINITSVQCGFGYRISIGSLRKYPNEEDVFEVTTRYSTFVGTSNIVRIKSWSSL
        ++ +  P   P+T  GIH+ SSSG  I    I+T D+CI+L+  S+ I I  V CG G+ ISIGSL  Y NEE V  VT   S F  T N VRIK+W+  
Subjt:  SILLLLPLLPPSTHVGIHISSSSGTNIMHLVISTADNCISLNPESKFINITSVQCGFGYRISIGSLRKYPNEEDVFEVTTRYSTFVGTSNIVRIKSWSSL

Query:  YSSIVSKAAYLNL
            V+   + NL
Subjt:  YSSIVSKAAYLNL

AT3G07850.1 Pectin lyase-like superfamily protein2.5e-1441.05Show/hide
Query:  GIHISSSSGTNIMHLVISTADNCISLNPESKFINITSVQCGFGYRISIGSLRKYPNEEDVFEVTTRYSTFVGTSNIVRIKSWSSLYSSIVSKAAY
        GIHI  S+G N++   I T D+C+S+   ++ + + +V+CG G+ ISIGSL +YPNE+ V  VT R      T N VRIK+W      I S   +
Subjt:  GIHISSSSGTNIMHLVISTADNCISLNPESKFINITSVQCGFGYRISIGSLRKYPNEEDVFEVTTRYSTFVGTSNIVRIKSWSSLYSSIVSKAAY

AT3G14040.1 Pectin lyase-like superfamily protein2.5e-1441.05Show/hide
Query:  GIHISSSSGTNIMHLVISTADNCISLNPESKFINITSVQCGFGYRISIGSLRKYPNEEDVFEVTTRYSTFVGTSNIVRIKSWSSLYSSIVSKAAY
        GIHI  S+G N++   I T D+C+S+   ++ + + +V+CG G+ ISIGSL +YPNE+ V  VT R      T N VRIK+W      I S   +
Subjt:  GIHISSSSGTNIMHLVISTADNCISLNPESKFINITSVQCGFGYRISIGSLRKYPNEEDVFEVTTRYSTFVGTSNIVRIKSWSSLYSSIVSKAAY

AT3G59850.1 Pectin lyase-like superfamily protein6.7e-1548.19Show/hide
Query:  GIHISSSSGTNIMHLVISTADNCISLNPESKFINITSVQCGFGYRISIGSLRKYPNEEDVFEVTTRYSTFVGTSNIVRIKSWS
        GIH+ SSS  +I++  IST D+C+S+ P +  + I +V CG G+ ISIGSL K   E  V  +T + +TF GT N VRIKSW+
Subjt:  GIHISSSSGTNIMHLVISTADNCISLNPESKFINITSVQCGFGYRISIGSLRKYPNEEDVFEVTTRYSTFVGTSNIVRIKSWS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGTCCATGCCATGATGTCTATCCTGTTGTTGTTGCCACTACTACCGCCGTCCACGCATGTTGGAATCCACATTTCATCGTCGAGTGGTACCAACATCATGCATTT
AGTTATCAGTACTGCAGATAATTGCATCTCCTTGAACCCTGAAAGCAAATTTATCAATATAACCAGCGTCCAATGCGGTTTTGGCTACAGAATTAGTATCGGTAGCCTCA
GAAAGTATCCAAACGAAGAAGACGTCTTTGAAGTCACAACAAGATACTCTACATTTGTTGGCACGTCCAATATAGTGAGAATCAAATCGTGGTCATCTTTGTATTCCAGT
ATTGTTAGCAAGGCCGCATATCTCAATCTCCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGTCCATGCCATGATGTCTATCCTGTTGTTGTTGCCACTACTACCGCCGTCCACGCATGTTGGAATCCACATTTCATCGTCGAGTGGTACCAACATCATGCATTT
AGTTATCAGTACTGCAGATAATTGCATCTCCTTGAACCCTGAAAGCAAATTTATCAATATAACCAGCGTCCAATGCGGTTTTGGCTACAGAATTAGTATCGGTAGCCTCA
GAAAGTATCCAAACGAAGAAGACGTCTTTGAAGTCACAACAAGATACTCTACATTTGTTGGCACGTCCAATATAGTGAGAATCAAATCGTGGTCATCTTTGTATTCCAGT
ATTGTTAGCAAGGCCGCATATCTCAATCTCCAATGA
Protein sequenceShow/hide protein sequence
MEVHAMMSILLLLPLLPPSTHVGIHISSSSGTNIMHLVISTADNCISLNPESKFINITSVQCGFGYRISIGSLRKYPNEEDVFEVTTRYSTFVGTSNIVRIKSWSSLYSS
IVSKAAYLNLQ