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Lsi05G005470 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G005470
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionDNA mismatch repair protein MSH5
Genome locationchr05:6793328..6816932
RNA-Seq ExpressionLsi05G005470
SyntenyLsi05G005470
Gene Ontology termsGO:0010777 - meiotic mismatch repair involved in reciprocal meiotic recombination (biological process)
GO:0051026 - chiasma assembly (biological process)
GO:0000794 - condensed nuclear chromosome (cellular component)
GO:0043073 - germ cell nucleus (cellular component)
GO:0005524 - ATP binding (molecular function)
GO:0030983 - mismatched DNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8650117.1 hypothetical protein Csa_010033 [Cucumis sativus]4.4e-2692.75Show/hide
Query:  AATVGVPDEVIKRAAFVLDAMENHKHVERLHNENLSAQDKLYQDAVDKLLRLDVNKCDLSRFFQDIFSS
        A   GVPDEVIKRAAFVLDAMENHKHVERLHNENLSAQDKLYQDAVDKLLRLDVNKCDL RFFQDIF S
Subjt:  AATVGVPDEVIKRAAFVLDAMENHKHVERLHNENLSAQDKLYQDAVDKLLRLDVNKCDLSRFFQDIFSS

XP_004149586.1 DNA mismatch repair protein MSH5 [Cucumis sativus]4.4e-2692.75Show/hide
Query:  AATVGVPDEVIKRAAFVLDAMENHKHVERLHNENLSAQDKLYQDAVDKLLRLDVNKCDLSRFFQDIFSS
        A   GVPDEVIKRAAFVLDAMENHKHVERLHNENLSAQDKLYQDAVDKLLRLDVNKCDL RFFQDIF S
Subjt:  AATVGVPDEVIKRAAFVLDAMENHKHVERLHNENLSAQDKLYQDAVDKLLRLDVNKCDLSRFFQDIFSS

XP_004149586.1 DNA mismatch repair protein MSH5 [Cucumis sativus]5.3e-0392.31Show/hide
Query:  NDVMSEAPTVKLVKSSIFSYEQAWHR
        +D MSEAPTVKLVKSSIFSYEQAWHR
Subjt:  NDVMSEAPTVKLVKSSIFSYEQAWHR

XP_004149586.1 DNA mismatch repair protein MSH5 [Cucumis sativus]2.9e-2589.86Show/hide
Query:  AATVGVPDEVIKRAAFVLDAMENHKHVERLHNENLSAQDKLYQDAVDKLLRLDVNKCDLSRFFQDIFSS
        A   GVPDEVIKRAAFVLDAM+NHKHVERLHNENLS QDKLYQDAVDKLLRLDVNKCDL RFFQDIF S
Subjt:  AATVGVPDEVIKRAAFVLDAMENHKHVERLHNENLSAQDKLYQDAVDKLLRLDVNKCDLSRFFQDIFSS

XP_008449117.1 PREDICTED: DNA mismatch repair protein MSH5 [Cucumis melo]1.2e-0288.46Show/hide
Query:  NDVMSEAPTVKLVKSSIFSYEQAWHR
        +D MS+APTVKLVKSSIFSYEQAWHR
Subjt:  NDVMSEAPTVKLVKSSIFSYEQAWHR

XP_008449117.1 PREDICTED: DNA mismatch repair protein MSH5 [Cucumis melo]2.9e-2591.3Show/hide
Query:  AATVGVPDEVIKRAAFVLDAMENHKHVERLHNENLSAQDKLYQDAVDKLLRLDVNKCDLSRFFQDIFSS
        A   GVPDEVIKRAAFVLDAMEN+KHVERLHNENLS QDKLYQDAVDKLLRLDVNKCDLSRFFQDIF S
Subjt:  AATVGVPDEVIKRAAFVLDAMENHKHVERLHNENLSAQDKLYQDAVDKLLRLDVNKCDLSRFFQDIFSS

XP_038903565.1 DNA mismatch repair protein MSH5 isoform X2 [Benincasa hispida]5.3e-0392.31Show/hide
Query:  NDVMSEAPTVKLVKSSIFSYEQAWHR
        +D MSEAPTVKLVKSSIFSYEQAWHR
Subjt:  NDVMSEAPTVKLVKSSIFSYEQAWHR

XP_038903565.1 DNA mismatch repair protein MSH5 isoform X2 [Benincasa hispida]2.9e-2591.3Show/hide
Query:  AATVGVPDEVIKRAAFVLDAMENHKHVERLHNENLSAQDKLYQDAVDKLLRLDVNKCDLSRFFQDIFSS
        A   GVPDEVIKRAAFVLDAMEN+KHVERLHNENLS QDKLYQDAVDKLLRLDVNKCDLSRFFQDIF S
Subjt:  AATVGVPDEVIKRAAFVLDAMENHKHVERLHNENLSAQDKLYQDAVDKLLRLDVNKCDLSRFFQDIFSS

TrEMBL top hitse value%identityAlignment
A0A0A0L665 DNA_MISMATCH_REPAIR_2 domain-containing protein2.2e-2692.75Show/hide
Query:  AATVGVPDEVIKRAAFVLDAMENHKHVERLHNENLSAQDKLYQDAVDKLLRLDVNKCDLSRFFQDIFSS
        A   GVPDEVIKRAAFVLDAMENHKHVERLHNENLSAQDKLYQDAVDKLLRLDVNKCDL RFFQDIF S
Subjt:  AATVGVPDEVIKRAAFVLDAMENHKHVERLHNENLSAQDKLYQDAVDKLLRLDVNKCDLSRFFQDIFSS

A0A0A0L665 DNA_MISMATCH_REPAIR_2 domain-containing protein2.6e-0392.31Show/hide
Query:  NDVMSEAPTVKLVKSSIFSYEQAWHR
        +D MSEAPTVKLVKSSIFSYEQAWHR
Subjt:  NDVMSEAPTVKLVKSSIFSYEQAWHR

A0A0A0L665 DNA_MISMATCH_REPAIR_2 domain-containing protein1.4e-2589.86Show/hide
Query:  AATVGVPDEVIKRAAFVLDAMENHKHVERLHNENLSAQDKLYQDAVDKLLRLDVNKCDLSRFFQDIFSS
        A   GVPDEVIKRAAFVLDAM+NHKHVERLHNENLS QDKLYQDAVDKLLRLDVNKCDL RFFQDIF S
Subjt:  AATVGVPDEVIKRAAFVLDAMENHKHVERLHNENLSAQDKLYQDAVDKLLRLDVNKCDLSRFFQDIFSS

A0A1S3BM83 DNA mismatch repair protein MSH55.7e-0388.46Show/hide
Query:  NDVMSEAPTVKLVKSSIFSYEQAWHR
        +D MS+APTVKLVKSSIFSYEQAWHR
Subjt:  NDVMSEAPTVKLVKSSIFSYEQAWHR

A0A1S3BM83 DNA mismatch repair protein MSH51.8e-2580.72Show/hide
Query:  ETIVKEGSFVPADA-ATVGVPDEVIKRAAFVLDAMENHKHVERLHNENLSAQDKLYQDAVDKLLRLDVNKCDLSRFFQDIFSS
        E IV     VP  A  + GVPDEVIKRAAFVLDAM+NHKHVERLHNENLS QDKLYQDAVDKLLRLDVNKCDL RFFQDIF S
Subjt:  ETIVKEGSFVPADA-ATVGVPDEVIKRAAFVLDAMENHKHVERLHNENLSAQDKLYQDAVDKLLRLDVNKCDLSRFFQDIFSS

A0A5A7VBY4 DNA mismatch repair protein MSH55.7e-0388.46Show/hide
Query:  NDVMSEAPTVKLVKSSIFSYEQAWHR
        +D MS+APTVKLVKSSIFSYEQAWHR
Subjt:  NDVMSEAPTVKLVKSSIFSYEQAWHR

A0A5A7VBY4 DNA mismatch repair protein MSH51.8e-2580.72Show/hide
Query:  ETIVKEGSFVPADA-ATVGVPDEVIKRAAFVLDAMENHKHVERLHNENLSAQDKLYQDAVDKLLRLDVNKCDLSRFFQDIFSS
        E IV     VP  A  + GVPDEVIKRAAFVLDAM+NHKHVERLHNENLS QDKLYQDAVDKLLRLDVNKCDL RFFQDIF S
Subjt:  ETIVKEGSFVPADA-ATVGVPDEVIKRAAFVLDAMENHKHVERLHNENLSAQDKLYQDAVDKLLRLDVNKCDLSRFFQDIFSS

A0A5D3BD47 DNA mismatch repair protein MSH55.7e-0388.46Show/hide
Query:  NDVMSEAPTVKLVKSSIFSYEQAWHR
        +D MS+APTVKLVKSSIFSYEQAWHR
Subjt:  NDVMSEAPTVKLVKSSIFSYEQAWHR

A0A5D3BD47 DNA mismatch repair protein MSH51.0e-2388.41Show/hide
Query:  AATVGVPDEVIKRAAFVLDAMENHKHVERLHNENLSAQDKLYQDAVDKLLRLDVNKCDLSRFFQDIFSS
        A   GVPDEVIKRAAFVLDAM N+KHVERLHNENLSAQDKLYQDAVDKLL LDVNKCDLSRFFQ IF S
Subjt:  AATVGVPDEVIKRAAFVLDAMENHKHVERLHNENLSAQDKLYQDAVDKLLRLDVNKCDLSRFFQDIFSS

A0A6J1L1D5 DNA mismatch repair protein MSH5 isoform X17.5e-0388.46Show/hide
Query:  NDVMSEAPTVKLVKSSIFSYEQAWHR
        +D +SEAPTVKLVKSSIFSYEQAWHR
Subjt:  NDVMSEAPTVKLVKSSIFSYEQAWHR

SwissProt top hitse value%identityAlignment
F4JEP5 DNA mismatch repair protein MSH51.5e-1352.17Show/hide
Query:  AATVGVPDEVIKRAAFVLDAMENHKHVERLHNENLSAQDKLYQDAVDKLLRLDVNKCDLSRFFQDIFSS
        A   GVP+EV+KRAA VLDA E++ +V++L  + +S+QD+ ++DAVDK   LD++K D+  FFQDIF+S
Subjt:  AATVGVPDEVIKRAAFVLDAMENHKHVERLHNENLSAQDKLYQDAVDKLLRLDVNKCDLSRFFQDIFSS

F4JEP5 DNA mismatch repair protein MSH51.2e-0273.08Show/hide
Query:  NDVMSEAPTVKLVKSSIFSYEQAWHR
        ND   E   VKLVKSS FSYEQAWHR
Subjt:  NDVMSEAPTVKLVKSSIFSYEQAWHR

Q6L4V0 DNA mismatch repair protein MSH56.5e-0476.92Show/hide
Query:  NDVMSEAPTVKLVKSSIFSYEQAWHR
        ND   EAP VKL+KSS FSYEQAWHR
Subjt:  NDVMSEAPTVKLVKSSIFSYEQAWHR

Arabidopsis top hitse value%identityAlignment
AT3G20475.1 MUTS-homologue 51.1e-1452.17Show/hide
Query:  AATVGVPDEVIKRAAFVLDAMENHKHVERLHNENLSAQDKLYQDAVDKLLRLDVNKCDLSRFFQDIFSS
        A   GVP+EV+KRAA VLDA E++ +V++L  + +S+QD+ ++DAVDK   LD++K D+  FFQDIF+S
Subjt:  AATVGVPDEVIKRAAFVLDAMENHKHVERLHNENLSAQDKLYQDAVDKLLRLDVNKCDLSRFFQDIFSS

AT3G20475.1 MUTS-homologue 51.3e-0430.3Show/hide
Query:  KKFNSPSSTYSSGDWTAFLK-------------------------------------------------VMGVLDVSRSKEKSYETIVKEGSFVPADAAT
        KKFNSP+S  +S DWTAFLK                                                 V+GV+DV+RSKE+ Y+T+VKEG     D   
Subjt:  KKFNSPSSTYSSGDWTAFLK-------------------------------------------------VMGVLDVSRSKEKSYETIVKEGSFVPADAAT

Query:  VGVPDEVIKRAAFVLDAMENHKHVERLHNENL
        +    E +      + AME  +H   LH E L
Subjt:  VGVPDEVIKRAAFVLDAMENHKHVERLHNENL

AT3G20475.1 MUTS-homologue 58.7e-0473.08Show/hide
Query:  NDVMSEAPTVKLVKSSIFSYEQAWHR
        ND   E   VKLVKSS FSYEQAWHR
Subjt:  NDVMSEAPTVKLVKSSIFSYEQAWHR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGACGTGATGTCTGAGGCTCCTACAGTGAAGCTTGTGAAGAGTTCGATTTTCAGCTACGAACAGGCCTGGCACAGGTTCTCTGTATTTGGCATGATGAATAAGAA
ATTCAATTCCCCAAGCTCAACATATTCTTCTGGTGATTGGACCGCATTCTTGAAGGTTATGGGCGTCCTGGATGTTAGTAGAAGCAAAGAGAAGTCATATGAGACAATTG
TGAAGGAAGGAAGCTTTGTTCCGGCAGATGCTGCAACCGTAGGCGTTCCTGATGAGGTTATTAAGAGAGCAGCCTTTGTTTTGGATGCTATGGAGAATCATAAGCATGTT
GAGCGGCTGCACAATGAGAATTTATCCGCTCAAGATAAGCTATACCAGGATGCCGTCGACAAGTTGCTAAGACTTGATGTTAACAAGTGTGATCTTAGCCGTTTCTTTCA
GGACATATTTAGTTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAATGACGTGATGTCTGAGGCTCCTACAGTGAAGCTTGTGAAGAGTTCGATTTTCAGCTACGAACAGGCCTGGCACAGGTTCTCTGTATTTGGCATGATGAATAAGAA
ATTCAATTCCCCAAGCTCAACATATTCTTCTGGTGATTGGACCGCATTCTTGAAGGTTATGGGCGTCCTGGATGTTAGTAGAAGCAAAGAGAAGTCATATGAGACAATTG
TGAAGGAAGGAAGCTTTGTTCCGGCAGATGCTGCAACCGTAGGCGTTCCTGATGAGGTTATTAAGAGAGCAGCCTTTGTTTTGGATGCTATGGAGAATCATAAGCATGTT
GAGCGGCTGCACAATGAGAATTTATCCGCTCAAGATAAGCTATACCAGGATGCCGTCGACAAGTTGCTAAGACTTGATGTTAACAAGTGTGATCTTAGCCGTTTCTTTCA
GGACATATTTAGTTCTTAATCGAACGTTTAAGTTTGCAATTGCAGCCTTGGTTGGCAGAAGATATCTGCCCCCCTAGTGGAGGTAATACAGACAGACAAGGGGCATTTGT
TTGACTCAAGATCATTTTTCATGCATCTTTATCATTCAAAAAGAAGAAAAAGGAAAAAAAAAGTTCAATATATAAAATTTTAATGGATAAACTAAATGGAGTTAAAACTA
TAATAGCAAAACAAGGCAAAATGACATGACGTTTGGAATCTATTGATAATTATCCAATTGAATTAGAATTTTAATCGAGGCTTGGCAGCTTCTTTTTTCAATACAACAAT
GGCTAGGAATCGAACATTTGACTTTAAATGAG
Protein sequenceShow/hide protein sequence
MNDVMSEAPTVKLVKSSIFSYEQAWHRFSVFGMMNKKFNSPSSTYSSGDWTAFLKVMGVLDVSRSKEKSYETIVKEGSFVPADAATVGVPDEVIKRAAFVLDAMENHKHV
ERLHNENLSAQDKLYQDAVDKLLRLDVNKCDLSRFFQDIFSS