; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi05G005730 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G005730
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionSmall ubiquitin-related modifier
Genome locationchr05:7127089..7129908
RNA-Seq ExpressionLsi05G005730
SyntenyLsi05G005730
Gene Ontology termsGO:0016925 - protein sumoylation (biological process)
GO:0030245 - cellulose catabolic process (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0008810 - cellulase activity (molecular function)
GO:0031386 - protein tag (molecular function)
GO:0044389 - ubiquitin-like protein ligase binding (molecular function)
InterPro domainsIPR000626 - Ubiquitin-like domain
IPR022617 - Rad60/SUMO-like domain
IPR029071 - Ubiquitin-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004149348.1 small ubiquitin-related modifier 1 [Cucumis sativus]6.1e-4899Show/hide
Query:  MSGVTNQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGGGGALI
        MSGVTNQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGGGGA+I
Subjt:  MSGVTNQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGGGGALI

XP_018812104.1 small ubiquitin-related modifier 1 [Juglans regia]1.4e-4495.92Show/hide
Query:  MSGVTNQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGGGGA
        MSGVTNQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSV+LNSIAFLFDGRRLRAEQTP+ELEMEDGDEIDAMLHQTGG  A
Subjt:  MSGVTNQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGGGGA

XP_022158763.1 small ubiquitin-related modifier 1-like [Momordica charantia]1.1e-4696Show/hide
Query:  MSGVTNQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGGGGALI
        MSGVTNQEEDKKPTDQSAHINLKVKGQDGNEVFFRIK+STQLKKLMNAYCDRQSV+LNSIAFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGGGG +I
Subjt:  MSGVTNQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGGGGALI

XP_023895256.1 small ubiquitin-related modifier 1 [Quercus suber]2.4e-4494.9Show/hide
Query:  MSGVTNQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGGGGA
        MSGVTNQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVD++SIAFLFDGRRLRAEQTP+ELEMEDGDEIDAMLHQTGG  A
Subjt:  MSGVTNQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGGGGA

XP_038905908.1 small ubiquitin-related modifier 1 [Benincasa hispida]7.9e-4899Show/hide
Query:  MSGVTNQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGGGGALI
        MSGVTNQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGGGGA+I
Subjt:  MSGVTNQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGGGGALI

TrEMBL top hitse value%identityAlignment
A0A0A0L2Y3 Small ubiquitin-related modifier2.9e-4899Show/hide
Query:  MSGVTNQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGGGGALI
        MSGVTNQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGGGGA+I
Subjt:  MSGVTNQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGGGGALI

A0A1S3BKS1 Small ubiquitin-related modifier2.9e-4899Show/hide
Query:  MSGVTNQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGGGGALI
        MSGVTNQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGGGGA+I
Subjt:  MSGVTNQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGGGGALI

A0A2I4DY72 Small ubiquitin-related modifier6.8e-4595.92Show/hide
Query:  MSGVTNQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGGGGA
        MSGVTNQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSV+LNSIAFLFDGRRLRAEQTP+ELEMEDGDEIDAMLHQTGG  A
Subjt:  MSGVTNQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGGGGA

A0A6A1VQH5 Small ubiquitin-related modifier6.8e-4595.92Show/hide
Query:  MSGVTNQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGGGGA
        MSGVTNQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSV+LNSIAFLFDGRRLRAEQTP+ELEMEDGDEIDAMLHQTGG  A
Subjt:  MSGVTNQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGGGGA

A0A6J1DX09 Small ubiquitin-related modifier5.5e-4796Show/hide
Query:  MSGVTNQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGGGGALI
        MSGVTNQEEDKKPTDQSAHINLKVKGQDGNEVFFRIK+STQLKKLMNAYCDRQSV+LNSIAFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGGGG +I
Subjt:  MSGVTNQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGGGGALI

SwissProt top hitse value%identityAlignment
O13351 Ubiquitin-like protein pmt3/smt32.4e-2356.38Show/hide
Query:  SGVTNQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGG
        +G T+Q++ K  T+   HINLKV GQD NEVFF+IK++T+  KLM  YC RQ   +NS+ FL DG R+R +QTP EL+MEDGD+I+A+L Q GG
Subjt:  SGVTNQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGG

P55852 Small ubiquitin-related modifier 16.1e-4392.39Show/hide
Query:  NQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGGGG
        NQEEDKKP D  AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVD+NSIAFLFDGRRLRAEQTP+EL+MEDGDEIDAMLHQTGG G
Subjt:  NQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGGGG

P55857 Small ubiquitin-related modifier 11.6e-3887.91Show/hide
Query:  EEDKKPT---DQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGG
        EEDKKP       AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVD+N+IAFLFDGRRLR EQTP+ELEMEDGDEIDAMLHQTGG
Subjt:  EEDKKPT---DQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGG

Q9FLP5 Small ubiquitin-related modifier 37.3e-2053.93Show/hide
Query:  EDKKPTD--QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGG
        +D KP D  Q AH+ LKVK QDG+EV F+ K+S  LKKLM  YCDR+ + L++ AF+F+G R+   +TP+EL+MEDGD IDA    +GG
Subjt:  EDKKPTD--QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGG

Q9FLP6 Small ubiquitin-related modifier 21.5e-4195.51Show/hide
Query:  EEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGGG
        EEDKKP DQ AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVD NSIAFLFDGRRLRAEQTP+ELEMEDGDEIDAMLHQTGGG
Subjt:  EEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGGG

Arabidopsis top hitse value%identityAlignment
AT4G26840.1 small ubiquitin-like modifier 14.3e-4492.39Show/hide
Query:  NQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGGGG
        NQEEDKKP D  AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVD+NSIAFLFDGRRLRAEQTP+EL+MEDGDEIDAMLHQTGG G
Subjt:  NQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGGGG

AT5G55160.1 small ubiquitin-like modifier 21.1e-4295.51Show/hide
Query:  EEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGGG
        EEDKKP DQ AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVD NSIAFLFDGRRLRAEQTP+ELEMEDGDEIDAMLHQTGGG
Subjt:  EEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGGG

AT5G55160.2 small ubiquitin-like modifier 26.5e-4083.33Show/hide
Query:  EEDKKPTDQSAHINLKVKGQ-------------DGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTG
        EEDKKP DQ AHINLKVKGQ             DGNEVFFRIKRSTQLKKLMNAYCDRQSVD NSIAFLFDGRRLRAEQTP+ELEMEDGDEIDAMLHQTG
Subjt:  EEDKKPTDQSAHINLKVKGQ-------------DGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTG

Query:  GG
        GG
Subjt:  GG

AT5G55170.1 small ubiquitin-like modifier 35.2e-2153.93Show/hide
Query:  EDKKPTD--QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGG
        +D KP D  Q AH+ LKVK QDG+EV F+ K+S  LKKLM  YCDR+ + L++ AF+F+G R+   +TP+EL+MEDGD IDA    +GG
Subjt:  EDKKPTD--QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGG

AT5G55856.1 Ubiquitin-like superfamily protein3.3e-2052.33Show/hide
Query:  DKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGG
        DKKP   S+HI +KVK QD   V+FRIKR  +L+K+M+AY D+  V+++++ FLFDG R++  QTP EL +ED DEI+A   Q GG
Subjt:  DKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGGCGTTACCAATCAAGAAGAGGACAAGAAGCCCACCGATCAGTCGGCTCATATCAACCTCAAAGTCAAGGGCCAGGATGGAAATGAAGTTTTCTTCCGGATCAA
AAGGAGTACCCAACTGAAGAAGCTAATGAATGCTTACTGTGACAGGCAGTCGGTTGATTTGAACTCCATTGCATTCTTGTTTGACGGCCGCCGACTGCGTGCAGAGCAGA
CTCCAGAAGAGCTGGAAATGGAGGATGGAGATGAGATTGATGCAATGCTTCATCAAACTGGAGGTGGAGGTGCTCTTATCTAA
mRNA sequenceShow/hide mRNA sequence
CTTAATTCCATCAGTCGTGTAATAGTGTACGTTGGATCAATGAATCCAAGAACGCATCGTGACCGTCGATTTAGAACCTCAAAAATTCCACCCACTTTCCCTTGAAGACT
CAGCGTCACATATAGTGCAAAACCAGGCGAAGAGCAATTGCGAGATTTTCCGAACCCTTTTTTTTCATTCTTCGCTTGGACATCGCGAAGATCAAACCCCAGAAATTTTT
CCTTCTTCCAACTTCAAATAATGTCGGGCGTTACCAATCAAGAAGAGGACAAGAAGCCCACCGATCAGTCGGCTCATATCAACCTCAAAGTCAAGGGCCAGGATGGAAAT
GAAGTTTTCTTCCGGATCAAAAGGAGTACCCAACTGAAGAAGCTAATGAATGCTTACTGTGACAGGCAGTCGGTTGATTTGAACTCCATTGCATTCTTGTTTGACGGCCG
CCGACTGCGTGCAGAGCAGACTCCAGAAGAGCTGGAAATGGAGGATGGAGATGAGATTGATGCAATGCTTCATCAAACTGGAGGTGGAGGTGCTCTTATCTAAGTTAATT
TCAAAAACAAAATAGTTCCTAAAACATCATTTGGGAATCTATAATTTTCTTACTACTGCTACTGCTAGTATATGCCTGAACTTCTGCTGCTGGATGTTGCTTTTGTCTAT
AAATTACGATAACGATTTCTGCCTCTTCCAGTTCTCTAGAAGAGAAAGAGAGACTATGTTGGACTCCTTTATATATGTAAATGCTGTTGATGTGGATTCCTCCTGTTTCA
TTTTTCTGAGTACATCCTGAAGTTACAATGTGATTATGTTTGGCTTGTGAGTCTTTGTTCCCGAGACATGAAACTTTCAAAAGGTAAAATAACAGTACTTGTGAAGGAAC
TTCAAAGATAAGATCTACAGGGTTTCACCAAGAAGGATTGATTCTGCTAAGTGCCAACTGTACTCGAAGCTTGGGAAGCTAATAAGTATATTGTTTCTCTATTCACAGAT
AGCCACTGCCCTGATGTTCTAAAAAGTCCCAAAATCATGAAGGAAACGAAGAAGCTTTTGGTATAGGTTAGTTGTTATCTGTCTCATAATCAGCCTAAAGATGGTACTAC
TTTGTTTTAATGAATAAACAACTGAAAAATATTGATCAACAAAGCTCTTTGCTTTGCTATTTGAGTTATGAAAAAGATTCCATATCTCTGCAAAAGGTAATATTCTTCCT
TTAGAGGTTGTTTGTTTGCTGGAGAAGCACAATAATCTTCTTCGACATGTGAAACTTGTTAACAATGTTAACAATTTTAATCAGGATGGGATTGGAAAGTCTATGTTTGT
ATACTCGTATGTCTGACTTCGAGGTTGATAGTACAATTTCTTCCTCGTGTTTATGTGAGGGCAAAACAATTGTCTTCTGAGAGGGGAG
Protein sequenceShow/hide protein sequence
MSGVTNQEEDKKPTDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRAEQTPEELEMEDGDEIDAMLHQTGGGGALI