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Lsi05G005780 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G005780
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionLIM and calponin domains-containing protein 1, putative
Genome locationchr05:7169169..7169717
RNA-Seq ExpressionLsi05G005780
SyntenyLsi05G005780
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR008480 - Protein of unknown function DUF761, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0055857.1 putative LIM and calponin domains-containing protein 1 [Cucumis melo var. makuwa]3.8e-7284.21Show/hide
Query:  MNKFKKSEILVLLGLTVLLVITPLLSSSLRPTYLYFIFNLLIIALGAQAGLLSSAFPNNDPPD-QDKTNKLSLTSPETAETSG-----KKHRALEKALSD
        MNKFKKSEILVLLGLT+LLVITPLLSSSLRPTYLYFIFNLLIIALG QAGLL     N+ PPD QDKTNKLSLTSPET  +S      KKHRALEKA SD
Subjt:  MNKFKKSEILVLLGLTVLLVITPLLSSSLRPTYLYFIFNLLIIALGAQAGLLSSAFPNNDPPD-QDKTNKLSLTSPETAETSG-----KKHRALEKALSD

Query:  KIPAGNVKMESLKKCPSASSIFYIGEGDSEAEDTTAVEDVEEEV--GGGGNNGQELFAQAETFIGNFYKQLKMQKEESWKNINGFYQKRF
        KI +GNVKMESLKKCPSASSIFYIGEGDSEAE+TT +ED+EEEV  GGG NNGQELFAQAETFIGNFYKQLKMQKEESWKNI+GFYQKRF
Subjt:  KIPAGNVKMESLKKCPSASSIFYIGEGDSEAEDTTAVEDVEEEV--GGGGNNGQELFAQAETFIGNFYKQLKMQKEESWKNINGFYQKRF

KAG6577458.1 hypothetical protein SDJN03_25032, partial [Cucurbita argyrosperma subsp. sororia]1.9e-4460.33Show/hide
Query:  MNKFKKSEILVLLGLTVLLVITPLLSSSLRPTYLYFIFNLLIIALGAQAGLLSSAFPNNDPPDQDKTNKLSLTSPETAETSGKKHRALEKALSDKIPAGN
        M++ K+SE++++L LT+LL+ITPLLSSSLRPTYLYF+FNLLI+      GLLSSAFPN         N  S  +  +  TS   HRALEKA SD IP  N
Subjt:  MNKFKKSEILVLLGLTVLLVITPLLSSSLRPTYLYFIFNLLIIALGAQAGLLSSAFPNNDPPDQDKTNKLSLTSPETAETSGKKHRALEKALSDKIPAGN

Query:  VKMESLKKCPSASSIFYIGEGDSEAEDTTAVEDVEEEVGGG--GNNGQELFAQAETFIGNFYKQLKMQKEESWKNINGFYQKRF
         K+ESL KCPSAS+IF+IG+GDS        E+ EEE  GG  G NGQ+LFAQAETFIGNFYKQL+MQK+ESWKN++GFY+K F
Subjt:  VKMESLKKCPSASSIFYIGEGDSEAEDTTAVEDVEEEVGGG--GNNGQELFAQAETFIGNFYKQLKMQKEESWKNINGFYQKRF

KAG7015529.1 hypothetical protein SDJN02_23165, partial [Cucurbita argyrosperma subsp. argyrosperma]1.0e-4059.32Show/hide
Query:  MNKFKKSEILVLLGLTVLLVITPLLSSSLRPTYLYFIFNLLIIALGAQAGLLSSAFPNNDPPDQDKTNKLSLTSPETAETSGKKHRALEKALSDKIPAGN
        M++ K+SE++++L LT+LL+ITPLLSSSLRPTYLYF+FNLLI+      GLLSSAFPN         N  S  +  +  TS   HRALEKA SD IP  N
Subjt:  MNKFKKSEILVLLGLTVLLVITPLLSSSLRPTYLYFIFNLLIIALGAQAGLLSSAFPNNDPPDQDKTNKLSLTSPETAETSGKKHRALEKALSDKIPAGN

Query:  VKMESLKKCPSASSIFYIGEGDSEAEDTTAVEDVEEEVGGG--GNNGQELFAQAETFIGNFYKQLKMQKEESWKNIN
         K+ESL KCPS S+IF+IG+GDS        E+ EEE  GG  G NGQ+LFAQAETFIGNFYKQL+MQK+ESWKN++
Subjt:  VKMESLKKCPSASSIFYIGEGDSEAEDTTAVEDVEEEVGGG--GNNGQELFAQAETFIGNFYKQLKMQKEESWKNIN

KGN56109.1 hypothetical protein Csa_011766 [Cucumis sativus]3.0e-6983.33Show/hide
Query:  MNKFKKSEILVLLGLTVLLVITPLLSSSLRPTYLYFIFNLLIIALGAQAGLLSSAFPNNDPPD-QDKTNKLSLTSPET----AETSG-KKHRALEKALSD
        MNKFKKSEI+VLL LT+LLVITPLLSSSLRPTYLYFIFNLLIIALG QAGLL     N+ PPD QDKTNKLSLTSPET     ETS  KKHRALEKA SD
Subjt:  MNKFKKSEILVLLGLTVLLVITPLLSSSLRPTYLYFIFNLLIIALGAQAGLLSSAFPNNDPPD-QDKTNKLSLTSPET----AETSG-KKHRALEKALSD

Query:  KIPAGNVKMESLKKCPSASSIFYIGEGDSEAEDTT-AVEDVEEEV---GGGGNNGQELFAQAETFIGNFYKQLKMQKEESWKNINGFYQKRF
        KI +GNVKMESLKKCPSASSIFYIGEGDSEAE+TT  +ED EEEV   GGG NNGQELFAQAETFIGNFYKQLKMQKEESWKNI+GFYQKRF
Subjt:  KIPAGNVKMESLKKCPSASSIFYIGEGDSEAEDTT-AVEDVEEEV---GGGGNNGQELFAQAETFIGNFYKQLKMQKEESWKNINGFYQKRF

XP_022932284.1 uncharacterized protein LOC111438634 [Cucurbita moschata]3.8e-4059.24Show/hide
Query:  MNKFKKSEILVLLGLTVLLVITPLLSSSLRPTYLYFIFNLLIIALGAQAGLLSSAFPNNDPPDQDKTNKLSLTSPETAETSGKKHRALEKALSDKIPAGN
        M++ K+SEI+++L LT+LL+ITPLLSSSLRPTYLYF+FNLLI+      GLLSSAFPN         N  S  +  +  TS   HRALEKA SD IP  N
Subjt:  MNKFKKSEILVLLGLTVLLVITPLLSSSLRPTYLYFIFNLLIIALGAQAGLLSSAFPNNDPPDQDKTNKLSLTSPETAETSGKKHRALEKALSDKIPAGN

Query:  VKMESLKKCPSASSIFYIGEGDSEAEDTTAVEDVEEEV--GGGGNNGQELFAQAETFIGNFYKQLKMQKEESWKN---INGFYQ
         K+ESL KCPSAS+IF+IG+ DS        E+ EEE   GG G NGQ+LFAQAETFIGNFYKQL+MQK+ESWKN   + GF Q
Subjt:  VKMESLKKCPSASSIFYIGEGDSEAEDTTAVEDVEEEV--GGGGNNGQELFAQAETFIGNFYKQLKMQKEESWKN---INGFYQ

TrEMBL top hitse value%identityAlignment
A0A067F414 Uncharacterized protein9.1e-4055.96Show/hide
Query:  FKKSEILVLLGLTVLLVITPLLSSSLRPTYLYFIFNLLIIALGAQAGLLSSAFPNNDPPDQDKTNKLSLTSPETAETSG-------KKHRALEKALSDKI
        FKKS+IL+L  L  LL+ITPLLSSSLRPTYLYF+FN+LIIALGA+AGLLSS    + PP+  K  + + T  E  +          KK +A+EK++S+KI
Subjt:  FKKSEILVLLGLTVLLVITPLLSSSLRPTYLYFIFNLLIIALGAQAGLLSSAFPNNDPPDQDKTNKLSLTSPETAETSG-------KKHRALEKALSDKI

Query:  PAGNVKMESLKKCPSASSIFYIGEGDSEAEDTTAV-------EDVEEEVGGGGNNGQELFAQAETFIGNFYKQLKMQKEESWKNINGFYQKRF
         +G VK+  LKKCPS  S+F+IG G++E  D   V       E  EEEV  GG +GQELF +AE FIGNFYKQLKMQ+E+SWK I+GFYQK F
Subjt:  PAGNVKMESLKKCPSASSIFYIGEGDSEAEDTTAV-------EDVEEEVGGGGNNGQELFAQAETFIGNFYKQLKMQKEESWKNINGFYQKRF

A0A0A0L509 Uncharacterized protein1.4e-6983.33Show/hide
Query:  MNKFKKSEILVLLGLTVLLVITPLLSSSLRPTYLYFIFNLLIIALGAQAGLLSSAFPNNDPPD-QDKTNKLSLTSPET----AETSG-KKHRALEKALSD
        MNKFKKSEI+VLL LT+LLVITPLLSSSLRPTYLYFIFNLLIIALG QAGLL     N+ PPD QDKTNKLSLTSPET     ETS  KKHRALEKA SD
Subjt:  MNKFKKSEILVLLGLTVLLVITPLLSSSLRPTYLYFIFNLLIIALGAQAGLLSSAFPNNDPPD-QDKTNKLSLTSPET----AETSG-KKHRALEKALSD

Query:  KIPAGNVKMESLKKCPSASSIFYIGEGDSEAEDTT-AVEDVEEEV---GGGGNNGQELFAQAETFIGNFYKQLKMQKEESWKNINGFYQKRF
        KI +GNVKMESLKKCPSASSIFYIGEGDSEAE+TT  +ED EEEV   GGG NNGQELFAQAETFIGNFYKQLKMQKEESWKNI+GFYQKRF
Subjt:  KIPAGNVKMESLKKCPSASSIFYIGEGDSEAEDTT-AVEDVEEEV---GGGGNNGQELFAQAETFIGNFYKQLKMQKEESWKNINGFYQKRF

A0A5D3DK86 Putative LIM and calponin domains-containing protein 11.8e-7284.21Show/hide
Query:  MNKFKKSEILVLLGLTVLLVITPLLSSSLRPTYLYFIFNLLIIALGAQAGLLSSAFPNNDPPD-QDKTNKLSLTSPETAETSG-----KKHRALEKALSD
        MNKFKKSEILVLLGLT+LLVITPLLSSSLRPTYLYFIFNLLIIALG QAGLL     N+ PPD QDKTNKLSLTSPET  +S      KKHRALEKA SD
Subjt:  MNKFKKSEILVLLGLTVLLVITPLLSSSLRPTYLYFIFNLLIIALGAQAGLLSSAFPNNDPPD-QDKTNKLSLTSPETAETSG-----KKHRALEKALSD

Query:  KIPAGNVKMESLKKCPSASSIFYIGEGDSEAEDTTAVEDVEEEV--GGGGNNGQELFAQAETFIGNFYKQLKMQKEESWKNINGFYQKRF
        KI +GNVKMESLKKCPSASSIFYIGEGDSEAE+TT +ED+EEEV  GGG NNGQELFAQAETFIGNFYKQLKMQKEESWKNI+GFYQKRF
Subjt:  KIPAGNVKMESLKKCPSASSIFYIGEGDSEAEDTTAVEDVEEEV--GGGGNNGQELFAQAETFIGNFYKQLKMQKEESWKNINGFYQKRF

A0A6J1EWK2 uncharacterized protein LOC1114386341.8e-4059.24Show/hide
Query:  MNKFKKSEILVLLGLTVLLVITPLLSSSLRPTYLYFIFNLLIIALGAQAGLLSSAFPNNDPPDQDKTNKLSLTSPETAETSGKKHRALEKALSDKIPAGN
        M++ K+SEI+++L LT+LL+ITPLLSSSLRPTYLYF+FNLLI+      GLLSSAFPN         N  S  +  +  TS   HRALEKA SD IP  N
Subjt:  MNKFKKSEILVLLGLTVLLVITPLLSSSLRPTYLYFIFNLLIIALGAQAGLLSSAFPNNDPPDQDKTNKLSLTSPETAETSGKKHRALEKALSDKIPAGN

Query:  VKMESLKKCPSASSIFYIGEGDSEAEDTTAVEDVEEEV--GGGGNNGQELFAQAETFIGNFYKQLKMQKEESWKN---INGFYQ
         K+ESL KCPSAS+IF+IG+ DS        E+ EEE   GG G NGQ+LFAQAETFIGNFYKQL+MQK+ESWKN   + GF Q
Subjt:  VKMESLKKCPSASSIFYIGEGDSEAEDTTAVEDVEEEV--GGGGNNGQELFAQAETFIGNFYKQLKMQKEESWKN---INGFYQ

V4UT10 Uncharacterized protein9.1e-4055.96Show/hide
Query:  FKKSEILVLLGLTVLLVITPLLSSSLRPTYLYFIFNLLIIALGAQAGLLSSAFPNNDPPDQDKTNKLSLTSPETAETSG-------KKHRALEKALSDKI
        FKKS+IL+L  L  LL+ITPLLSSSLRPTYLYF+FN+LIIALGA+AGLLSS    + PP+  K  + + T  E  +          KK +A+EK++S+KI
Subjt:  FKKSEILVLLGLTVLLVITPLLSSSLRPTYLYFIFNLLIIALGAQAGLLSSAFPNNDPPDQDKTNKLSLTSPETAETSG-------KKHRALEKALSDKI

Query:  PAGNVKMESLKKCPSASSIFYIGEGDSEAEDTTAV-------EDVEEEVGGGGNNGQELFAQAETFIGNFYKQLKMQKEESWKNINGFYQKRF
         +G VK+  LKKCPS  S+F+IG G++E  D   V       E  EEEV  GG +GQELF +AE FIGNFYKQLKMQ+E+SWK I+GFYQK F
Subjt:  PAGNVKMESLKKCPSASSIFYIGEGDSEAEDTTAV-------EDVEEEVGGGGNNGQELFAQAETFIGNFYKQLKMQKEESWKNINGFYQKRF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACAAGTTCAAGAAATCAGAAATTCTAGTGCTTTTAGGCCTCACAGTGCTTCTAGTAATAACTCCTCTTCTTTCCTCATCCTTAAGACCTACATATCTCTACTTCAT
CTTCAACCTTCTCATCATTGCCCTTGGAGCACAAGCTGGCCTTCTCTCTTCAGCTTTCCCAAATAATGATCCTCCTGATCAAGACAAGACCAACAAGCTTTCTCTAACTT
CACCCGAAACCGCGGAAACCTCCGGTAAGAAGCACCGGGCTTTGGAGAAAGCTCTCTCCGACAAGATTCCGGCTGGCAATGTCAAGATGGAATCTCTTAAGAAGTGTCCC
TCCGCTTCGAGTATTTTCTATATTGGAGAGGGCGATAGCGAGGCGGAGGACACGACTGCGGTTGAGGACGTGGAAGAGGAGGTTGGCGGCGGCGGAAATAATGGGCAAGA
ATTGTTTGCTCAAGCTGAGACGTTTATTGGGAACTTTTACAAGCAGTTGAAGATGCAGAAAGAAGAGTCTTGGAAAAACATTAATGGTTTTTATCAGAAACGCTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAACAAGTTCAAGAAATCAGAAATTCTAGTGCTTTTAGGCCTCACAGTGCTTCTAGTAATAACTCCTCTTCTTTCCTCATCCTTAAGACCTACATATCTCTACTTCAT
CTTCAACCTTCTCATCATTGCCCTTGGAGCACAAGCTGGCCTTCTCTCTTCAGCTTTCCCAAATAATGATCCTCCTGATCAAGACAAGACCAACAAGCTTTCTCTAACTT
CACCCGAAACCGCGGAAACCTCCGGTAAGAAGCACCGGGCTTTGGAGAAAGCTCTCTCCGACAAGATTCCGGCTGGCAATGTCAAGATGGAATCTCTTAAGAAGTGTCCC
TCCGCTTCGAGTATTTTCTATATTGGAGAGGGCGATAGCGAGGCGGAGGACACGACTGCGGTTGAGGACGTGGAAGAGGAGGTTGGCGGCGGCGGAAATAATGGGCAAGA
ATTGTTTGCTCAAGCTGAGACGTTTATTGGGAACTTTTACAAGCAGTTGAAGATGCAGAAAGAAGAGTCTTGGAAAAACATTAATGGTTTTTATCAGAAACGCTTTTGA
Protein sequenceShow/hide protein sequence
MNKFKKSEILVLLGLTVLLVITPLLSSSLRPTYLYFIFNLLIIALGAQAGLLSSAFPNNDPPDQDKTNKLSLTSPETAETSGKKHRALEKALSDKIPAGNVKMESLKKCP
SASSIFYIGEGDSEAEDTTAVEDVEEEVGGGGNNGQELFAQAETFIGNFYKQLKMQKEESWKNINGFYQKRF