; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi05G006140 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G006140
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionprotein LHCP TRANSLOCATION DEFECT
Genome locationchr05:7581041..7583401
RNA-Seq ExpressionLsi05G006140
SyntenyLsi05G006140
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0090391 - granum assembly (biological process)
GO:0009570 - chloroplast stroma (cellular component)
GO:0009941 - chloroplast envelope (cellular component)
InterPro domainsIPR036770 - Ankyrin repeat-containing domain superfamily
IPR044242 - Protein LHCP TRANSLOCATION DEFECT-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004152919.1 protein LHCP TRANSLOCATION DEFECT [Cucumis sativus]1.7e-8394.05Show/hide
Query:  MASLSCTTSINLTPRSFNSRPPLKLGSQLLGLQSSLRWVSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
        MASLSCT+SINLTPRSFNSRPP KLGS  LGLQS+LRW+SPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
Subjt:  MASLSCTTSINLTPRSFNSRPPLKLGSQLLGLQSSLRWVSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM

Query:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKKA
        EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA+YDVKDVDGRTA+DRA NEEIKDFILNFS KKA
Subjt:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKKA

XP_008463435.1 PREDICTED: protein LHCP TRANSLOCATION DEFECT [Cucumis melo]3.2e-8293.45Show/hide
Query:  MASLSCTTSINLTPRSFNSRPPLKLGSQLLGLQSSLRWVSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
        MASLSCTTSINLTPRSFNSRPP KL S  LGLQS+LRW+SP+SIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
Subjt:  MASLSCTTSINLTPRSFNSRPPLKLGSQLLGLQSSLRWVSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM

Query:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKKA
        EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA+YDVKDVDGRTAIDRA NEEIKDFIL FS KKA
Subjt:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKKA

XP_022932181.1 protein LHCP TRANSLOCATION DEFECT [Cucurbita moschata]1.8e-8092.26Show/hide
Query:  MASLSCT-TSINLTPRSFNSRPPLKLGSQLLGLQSSLRWVSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK
        MAS+SCT TSINL+P S NSRPPLKLGSQ LGLQS+LRWVSP++IGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDK
Subjt:  MASLSCT-TSINLTPRSFNSRPPLKLGSQLLGLQSSLRWVSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK

Query:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKK
        MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA YDVKDVDGRTAIDRAPN+EIKDFILNFSV+K
Subjt:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKK

XP_022985270.1 protein LHCP TRANSLOCATION DEFECT [Cucurbita maxima]3.6e-8192.86Show/hide
Query:  MASLSCT-TSINLTPRSFNSRPPLKLGSQLLGLQSSLRWVSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK
        MAS+SCT TSINL+P SFNSRPPLKLGSQ LGLQS+LRWVSP++IGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDK
Subjt:  MASLSCT-TSINLTPRSFNSRPPLKLGSQLLGLQSSLRWVSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK

Query:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKK
        MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA YDVKDVDGRTAIDRAPN+EIKDFILNFSV+K
Subjt:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKK

XP_038903413.1 protein LHCP TRANSLOCATION DEFECT [Benincasa hispida]7.7e-8494.64Show/hide
Query:  MASLSCTTSINLTPRSFNSRPPLKLGSQLLGLQSSLRWVSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
        MASLSCT S+NLTPRSFNSRPP KL SQ LGLQS+LRWVSPV+IGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
Subjt:  MASLSCTTSINLTPRSFNSRPPLKLGSQLLGLQSSLRWVSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM

Query:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKKA
        EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILN SVK A
Subjt:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKKA

TrEMBL top hitse value%identityAlignment
A0A0A0L309 ANK_REP_REGION domain-containing protein8.3e-8494.05Show/hide
Query:  MASLSCTTSINLTPRSFNSRPPLKLGSQLLGLQSSLRWVSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
        MASLSCT+SINLTPRSFNSRPP KLGS  LGLQS+LRW+SPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
Subjt:  MASLSCTTSINLTPRSFNSRPPLKLGSQLLGLQSSLRWVSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM

Query:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKKA
        EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA+YDVKDVDGRTA+DRA NEEIKDFILNFS KKA
Subjt:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKKA

A0A1S3CJ75 protein LHCP TRANSLOCATION DEFECT1.6e-8293.45Show/hide
Query:  MASLSCTTSINLTPRSFNSRPPLKLGSQLLGLQSSLRWVSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
        MASLSCTTSINLTPRSFNSRPP KL S  LGLQS+LRW+SP+SIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
Subjt:  MASLSCTTSINLTPRSFNSRPPLKLGSQLLGLQSSLRWVSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM

Query:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKKA
        EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA+YDVKDVDGRTAIDRA NEEIKDFIL FS KKA
Subjt:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKKA

A0A5D3BT07 Protein LHCP TRANSLOCATION DEFECT1.6e-8293.45Show/hide
Query:  MASLSCTTSINLTPRSFNSRPPLKLGSQLLGLQSSLRWVSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
        MASLSCTTSINLTPRSFNSRPP KL S  LGLQS+LRW+SP+SIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
Subjt:  MASLSCTTSINLTPRSFNSRPPLKLGSQLLGLQSSLRWVSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM

Query:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKKA
        EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA+YDVKDVDGRTAIDRA NEEIKDFIL FS KKA
Subjt:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKKA

A0A6J1EVN2 protein LHCP TRANSLOCATION DEFECT8.6e-8192.26Show/hide
Query:  MASLSCT-TSINLTPRSFNSRPPLKLGSQLLGLQSSLRWVSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK
        MAS+SCT TSINL+P S NSRPPLKLGSQ LGLQS+LRWVSP++IGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDK
Subjt:  MASLSCT-TSINLTPRSFNSRPPLKLGSQLLGLQSSLRWVSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK

Query:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKK
        MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA YDVKDVDGRTAIDRAPN+EIKDFILNFSV+K
Subjt:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKK

A0A6J1JAV9 protein LHCP TRANSLOCATION DEFECT1.7e-8192.86Show/hide
Query:  MASLSCT-TSINLTPRSFNSRPPLKLGSQLLGLQSSLRWVSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK
        MAS+SCT TSINL+P SFNSRPPLKLGSQ LGLQS+LRWVSP++IGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDK
Subjt:  MASLSCT-TSINLTPRSFNSRPPLKLGSQLLGLQSSLRWVSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK

Query:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKK
        MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA YDVKDVDGRTAIDRAPN+EIKDFILNFSV+K
Subjt:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKK

SwissProt top hitse value%identityAlignment
A2YLX7 Protein LHCP TRANSLOCATION DEFECT3.0e-4660.47Show/hide
Query:  MASLSCTTSINLTPRSFNSRPPLKLGSQL---LGLQSSLRWVSPVSIGPSNGSRATCWFNL-RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGT
        MAS+ CT  ++    S ++    +   +    LG     R  + V    S     TC+F    ++AEGAGIYGSQ RDDF+RDDVEQYFNYMGMLAVEGT
Subjt:  MASLSCTTSINLTPRSFNSRPPLKLGSQL---LGLQSSLRWVSPVSIGPSNGSRATCWFNL-RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGT

Query:  YDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKKA
        YDKMEALL+QDIHPVDILLMLAASEGDKPKLEELLRAGA YDVKDVDGRTA+DRA  ++ ++FIL F+   A
Subjt:  YDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKKA

A3BKF2 Protein LHCP TRANSLOCATION DEFECT3.0e-4660.47Show/hide
Query:  MASLSCTTSINLTPRSFNSRPPLKLGSQL---LGLQSSLRWVSPVSIGPSNGSRATCWFNL-RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGT
        MAS+ CT  ++    S ++    +   +    LG     R  + V    S     TC+F    ++AEGAGIYGSQ RDDF+RDDVEQYFNYMGMLAVEGT
Subjt:  MASLSCTTSINLTPRSFNSRPPLKLGSQL---LGLQSSLRWVSPVSIGPSNGSRATCWFNL-RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGT

Query:  YDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKKA
        YDKMEALL+QDIHPVDILLMLAASEGDKPKLEELLRAGA YDVKDVDGRTA+DRA  ++ ++FIL F+   A
Subjt:  YDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKKA

Q8VY88 Protein LHCP TRANSLOCATION DEFECT6.0e-5564.16Show/hide
Query:  SAMASLSCTTSINLTPRSFNSRPPLKLGSQLLGLQSSLRWVSPVSIGPSNGSRATCWFNLRQN---AEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEG
        S+  S SC  S+  +  S  S  P  L S+ LG ++    + P  +GPSNGSR TCWF   +N   AE AGIYGSQSRDDF+RDDVEQYFNYMGMLAVEG
Subjt:  SAMASLSCTTSINLTPRSFNSRPPLKLGSQLLGLQSSLRWVSPVSIGPSNGSRATCWFNLRQN---AEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEG

Query:  TYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKKA
        TY KMEALL+ +IHPVDILLMLAA+EGD+PK+EELL+AGA+Y VKD DGRTAIDRA +EEI+D IL +S +KA
Subjt:  TYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKKA

Arabidopsis top hitse value%identityAlignment
AT1G50900.1 Ankyrin repeat family protein4.2e-5664.16Show/hide
Query:  SAMASLSCTTSINLTPRSFNSRPPLKLGSQLLGLQSSLRWVSPVSIGPSNGSRATCWFNLRQN---AEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEG
        S+  S SC  S+  +  S  S  P  L S+ LG ++    + P  +GPSNGSR TCWF   +N   AE AGIYGSQSRDDF+RDDVEQYFNYMGMLAVEG
Subjt:  SAMASLSCTTSINLTPRSFNSRPPLKLGSQLLGLQSSLRWVSPVSIGPSNGSRATCWFNLRQN---AEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEG

Query:  TYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKKA
        TY KMEALL+ +IHPVDILLMLAA+EGD+PK+EELL+AGA+Y VKD DGRTAIDRA +EEI+D IL +S +KA
Subjt:  TYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKKA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAAACCTGCAAGAGTGCGATAGCAGAAGCTCATTTTCCTCTTACAAAACTTGCACAAACTCAGCCATGGCTTCCCTCTCCTGTACTACTTCCATAAATCTCACCCC
AAGATCCTTCAATTCTCGCCCCCCATTGAAATTGGGTTCCCAATTGCTTGGTCTTCAATCCAGCCTCCGATGGGTTTCACCCGTCTCCATTGGACCTTCCAATGGGTCTA
GAGCAACGTGCTGGTTCAATTTAAGGCAAAATGCTGAAGGTGCAGGCATTTATGGCAGCCAGTCCCGAGATGACTTCAACAGAGACGATGTTGAGCAGTATTTTAACTAC
ATGGGAATGCTGGCTGTAGAGGGTACATATGACAAAATGGAAGCTCTTTTGAGCCAAGACATTCACCCAGTGGACATTTTGCTGATGCTGGCTGCCTCAGAAGGGGACAA
ACCAAAACTTGAGGAGCTATTGAGAGCTGGAGCTAATTATGATGTGAAAGATGTAGATGGTCGAACTGCCATTGATAGAGCACCTAATGAAGAAATTAAGGATTTTATTC
TTAATTTTTCTGTTAAAAAGGCATGA
mRNA sequenceShow/hide mRNA sequence
ATGAAAAACCTGCAAGAGTGCGATAGCAGAAGCTCATTTTCCTCTTACAAAACTTGCACAAACTCAGCCATGGCTTCCCTCTCCTGTACTACTTCCATAAATCTCACCCC
AAGATCCTTCAATTCTCGCCCCCCATTGAAATTGGGTTCCCAATTGCTTGGTCTTCAATCCAGCCTCCGATGGGTTTCACCCGTCTCCATTGGACCTTCCAATGGGTCTA
GAGCAACGTGCTGGTTCAATTTAAGGCAAAATGCTGAAGGTGCAGGCATTTATGGCAGCCAGTCCCGAGATGACTTCAACAGAGACGATGTTGAGCAGTATTTTAACTAC
ATGGGAATGCTGGCTGTAGAGGGTACATATGACAAAATGGAAGCTCTTTTGAGCCAAGACATTCACCCAGTGGACATTTTGCTGATGCTGGCTGCCTCAGAAGGGGACAA
ACCAAAACTTGAGGAGCTATTGAGAGCTGGAGCTAATTATGATGTGAAAGATGTAGATGGTCGAACTGCCATTGATAGAGCACCTAATGAAGAAATTAAGGATTTTATTC
TTAATTTTTCTGTTAAAAAGGCATGA
Protein sequenceShow/hide protein sequence
MKNLQECDSRSSFSSYKTCTNSAMASLSCTTSINLTPRSFNSRPPLKLGSQLLGLQSSLRWVSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNY
MGMLAVEGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKKA