CuGenDBv2

Gene ID	Lsi05G006360
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1
Genome location	chr05:7844382..7845023
RNA-Seq Expression	Lsi05G006360
Synteny	Lsi05G006360
Gene Ontology terms	GO:0010258 - NADH dehydrogenase complex (plastoquinone) assembly (biological process) GO:0009570 - chloroplast stroma (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0025435.1 Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1 [Cucumis melo var. makuwa]

1.7e-100

91.55

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Query:  MASFHLHFLSAPNPILILPQSQPIFTNPLQITSKRDFSIKCSSQDSESNPNFPSPDPNFSALNQPESFPIEKRRRSEIVRQRRPTTDMAKPEPPNFEIGW
        MAS HLHFLS PNPIL+LPQS P FT PLQITSKRD SIK +SQDSES+PNFPSPDP FSALNQPE+FPIEKRRRSEI+RQR+PTT++AKPEPPNFEIGW
Subjt:  MASFHLHFLSAPNPILILPQSQPIFTNPLQITSKRDFSIKCSSQDSESNPNFPSPDPNFSALNQPESFPIEKRRRSEIVRQRRPTTDMAKPEPPNFEIGW

Query:  KRTKEINLEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILREDGKVEERMVTELFRVLKLMEMDLAMVKAAVKEETLSERLGQAK
        KRTKEINLEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILR+DGKVEERMVTELFRVLKLMEMDLAMVKAAVK+ETLSERLGQAK
Subjt:  KRTKEINLEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILREDGKVEERMVTELFRVLKLMEMDLAMVKAAVKEETLSERLGQAK

Query:  ARCRQAILVANSF
        ARCRQAILVANSF
Subjt:  ARCRQAILVANSF

XP_004152910.2 uncharacterized protein LOC101210146 [Cucumis sativus]

2.9e-100

90.14

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Query:  MASFHLHFLSAPNPILILPQSQPIFTNPLQITSKRDFSIKCSSQDSESNPNFPSPDPNFSALNQPESFPIEKRRRSEIVRQRRPTTDMAKPEPPNFEIGW
        MAS HLHFLS PNPIL+LPQS P FT PLQITSKRD SIKC+SQDSES+PNFPSPDPNF ALNQPE+FPIEKRRRS+I+RQR+P+T++AKPEPPNFEIGW
Subjt:  MASFHLHFLSAPNPILILPQSQPIFTNPLQITSKRDFSIKCSSQDSESNPNFPSPDPNFSALNQPESFPIEKRRRSEIVRQRRPTTDMAKPEPPNFEIGW

Query:  KRTKEINLEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILREDGKVEERMVTELFRVLKLMEMDLAMVKAAVKEETLSERLGQAK
        KRTKEI++EKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILR+DGKVEERMVTELFRVLKLMEMDLAMVKAAVK+ETLSERLGQAK
Subjt:  KRTKEINLEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILREDGKVEERMVTELFRVLKLMEMDLAMVKAAVKEETLSERLGQAK

Query:  ARCRQAILVANSF
        ARCRQAILVANSF
Subjt:  ARCRQAILVANSF

XP_008452345.1 PREDICTED: uncharacterized protein LOC103493403 [Cucumis melo]

3.5e-101

92.02

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Query:  MASFHLHFLSAPNPILILPQSQPIFTNPLQITSKRDFSIKCSSQDSESNPNFPSPDPNFSALNQPESFPIEKRRRSEIVRQRRPTTDMAKPEPPNFEIGW
        MAS HLHFLS PNPIL+LPQS P FT PLQITSKRD SIK +SQDSES+PNFPSPDPNFSALNQPE+FPIEKRRRSEI+RQR+PTT++AKPEPPNFEIGW
Subjt:  MASFHLHFLSAPNPILILPQSQPIFTNPLQITSKRDFSIKCSSQDSESNPNFPSPDPNFSALNQPESFPIEKRRRSEIVRQRRPTTDMAKPEPPNFEIGW

Query:  KRTKEINLEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILREDGKVEERMVTELFRVLKLMEMDLAMVKAAVKEETLSERLGQAK
        KRTKEINLEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILR+DGKVEERMVTELFRVLKLMEMDLAMVKAAVK+ETLSERLGQAK
Subjt:  KRTKEINLEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILREDGKVEERMVTELFRVLKLMEMDLAMVKAAVKEETLSERLGQAK

Query:  ARCRQAILVANSF
        ARCRQAILVANSF
Subjt:  ARCRQAILVANSF

XP_038903492.1 uncharacterized protein LOC120090072 isoform X1 [Benincasa hispida]

1.7e-95

92.57

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Query:  MASFHLHFLSAPNPILILPQSQPIFTNPLQITSKRDFSIKCSSQDSESNPNFPSPDPNFSALNQPESFPIEKRRRSEIVRQRRPTTDMAKPEPPNFEIGW
        MAS HLHFLS PNPILILPQSQP FT PLQITSKR+ SIKC+SQ+SES+PNFPSPDPNFSALNQPESFPIEKRRRSEIVRQRRPTTD+AKPEPPNFEIGW
Subjt:  MASFHLHFLSAPNPILILPQSQPIFTNPLQITSKRDFSIKCSSQDSESNPNFPSPDPNFSALNQPESFPIEKRRRSEIVRQRRPTTDMAKPEPPNFEIGW

Query:  KRTKEINLEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILREDGKVEERMVTELFRVLKLMEMDLAMVKAAVKEETLSERLGQAK
        KRTKEINLEKPIGWMIMDFLEKLEGLM+REFGSTELLAKVGEIVAERAREEAEIL +DGKVEERMVTELFRVLKLMEMD AMVKAAVK+ETLSERLGQAK
Subjt:  KRTKEINLEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILREDGKVEERMVTELFRVLKLMEMDLAMVKAAVKEETLSERLGQAK

Query:  AR
        AR
Subjt:  AR

XP_038903493.1 uncharacterized protein LOC120090072 isoform X2 [Benincasa hispida]

1.2e-96

91.3

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Query:  MASFHLHFLSAPNPILILPQSQPIFTNPLQITSKRDFSIKCSSQDSESNPNFPSPDPNFSALNQPESFPIEKRRRSEIVRQRRPTTDMAKPEPPNFEIGW
        MAS HLHFLS PNPILILPQSQP FT PLQITSKR+ SIKC+SQ+SES+PNFPSPDPNFSALNQPESFPIEKRRRSEIVRQRRPTTD+AKPEPPNFEIGW
Subjt:  MASFHLHFLSAPNPILILPQSQPIFTNPLQITSKRDFSIKCSSQDSESNPNFPSPDPNFSALNQPESFPIEKRRRSEIVRQRRPTTDMAKPEPPNFEIGW

Query:  KRTKEINLEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILREDGKVEERMVTELFRVLKLMEMDLAMVKAAVKEETLSERLGQAK
        KRTKEINLEKPIGWMIMDFLEKLEGLM+REFGSTELLAKVGEIVAERAREEAEIL +DGKVEERMVTELFRVLKLMEMD AMVKAAVK+ETLSERLGQAK
Subjt:  KRTKEINLEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILREDGKVEERMVTELFRVLKLMEMDLAMVKAAVKEETLSERLGQAK

Query:  ARCRQAI
        ARC   I
Subjt:  ARCRQAI

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L6D8 Uncharacterized protein

1.4e-100

90.14

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Query:  MASFHLHFLSAPNPILILPQSQPIFTNPLQITSKRDFSIKCSSQDSESNPNFPSPDPNFSALNQPESFPIEKRRRSEIVRQRRPTTDMAKPEPPNFEIGW
        MAS HLHFLS PNPIL+LPQS P FT PLQITSKRD SIKC+SQDSES+PNFPSPDPNF ALNQPE+FPIEKRRRS+I+RQR+P+T++AKPEPPNFEIGW
Subjt:  MASFHLHFLSAPNPILILPQSQPIFTNPLQITSKRDFSIKCSSQDSESNPNFPSPDPNFSALNQPESFPIEKRRRSEIVRQRRPTTDMAKPEPPNFEIGW

Query:  KRTKEINLEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILREDGKVEERMVTELFRVLKLMEMDLAMVKAAVKEETLSERLGQAK
        KRTKEI++EKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILR+DGKVEERMVTELFRVLKLMEMDLAMVKAAVK+ETLSERLGQAK
Subjt:  KRTKEINLEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILREDGKVEERMVTELFRVLKLMEMDLAMVKAAVKEETLSERLGQAK

Query:  ARCRQAILVANSF
        ARCRQAILVANSF
Subjt:  ARCRQAILVANSF

A0A1S3BT06 uncharacterized protein LOC103493403

1.7e-101

92.02

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Query:  MASFHLHFLSAPNPILILPQSQPIFTNPLQITSKRDFSIKCSSQDSESNPNFPSPDPNFSALNQPESFPIEKRRRSEIVRQRRPTTDMAKPEPPNFEIGW
        MAS HLHFLS PNPIL+LPQS P FT PLQITSKRD SIK +SQDSES+PNFPSPDPNFSALNQPE+FPIEKRRRSEI+RQR+PTT++AKPEPPNFEIGW
Subjt:  MASFHLHFLSAPNPILILPQSQPIFTNPLQITSKRDFSIKCSSQDSESNPNFPSPDPNFSALNQPESFPIEKRRRSEIVRQRRPTTDMAKPEPPNFEIGW

Query:  KRTKEINLEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILREDGKVEERMVTELFRVLKLMEMDLAMVKAAVKEETLSERLGQAK
        KRTKEINLEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILR+DGKVEERMVTELFRVLKLMEMDLAMVKAAVK+ETLSERLGQAK
Subjt:  KRTKEINLEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILREDGKVEERMVTELFRVLKLMEMDLAMVKAAVKEETLSERLGQAK

Query:  ARCRQAILVANSF
        ARCRQAILVANSF
Subjt:  ARCRQAILVANSF

A0A5D3C0F1 Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1

8.3e-101

91.55

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Query:  MASFHLHFLSAPNPILILPQSQPIFTNPLQITSKRDFSIKCSSQDSESNPNFPSPDPNFSALNQPESFPIEKRRRSEIVRQRRPTTDMAKPEPPNFEIGW
        MAS HLHFLS PNPIL+LPQS P FT PLQITSKRD SIK +SQDSES+PNFPSPDP FSALNQPE+FPIEKRRRSEI+RQR+PTT++AKPEPPNFEIGW
Subjt:  MASFHLHFLSAPNPILILPQSQPIFTNPLQITSKRDFSIKCSSQDSESNPNFPSPDPNFSALNQPESFPIEKRRRSEIVRQRRPTTDMAKPEPPNFEIGW

Query:  KRTKEINLEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILREDGKVEERMVTELFRVLKLMEMDLAMVKAAVKEETLSERLGQAK
        KRTKEINLEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILR+DGKVEERMVTELFRVLKLMEMDLAMVKAAVK+ETLSERLGQAK
Subjt:  KRTKEINLEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILREDGKVEERMVTELFRVLKLMEMDLAMVKAAVKEETLSERLGQAK

Query:  ARCRQAILVANSF
        ARCRQAILVANSF
Subjt:  ARCRQAILVANSF

A0A6J1EVI2 uncharacterized protein LOC111438454

3.1e-95

86.38

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Query:  MASFHLHFLSAPNPILILPQSQPIFTNPLQITSKRDFSIKCSSQDSESNPNFPSPDPNFSALNQPESFPIEKRRRSEIVRQRRPTTDMAKPEPPNFEIGW
        MA  HLH L APNP+L+LP+SQP FTNPLQIT KR  S+KCSS+ SES+PNFPSP+P+F ALNQPESFPIEKRRRSEIVRQRRP+ D+ KPEPPNFEIGW
Subjt:  MASFHLHFLSAPNPILILPQSQPIFTNPLQITSKRDFSIKCSSQDSESNPNFPSPDPNFSALNQPESFPIEKRRRSEIVRQRRPTTDMAKPEPPNFEIGW

Query:  KRTKEINLEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILREDGKVEERMVTELFRVLKLMEMDLAMVKAAVKEETLSERLGQAK
        KRTKEINLEKP+GWMIMDFLEKLE LMEREFGSTELLAKVGEIVAERAREEAEIL +DGKVE+RMVTELFRVLKLMEMDLAMVKAAVK+ETLSERL QAK
Subjt:  KRTKEINLEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILREDGKVEERMVTELFRVLKLMEMDLAMVKAAVKEETLSERLGQAK

Query:  ARCRQAILVANSF
        ARCRQAILVANSF
Subjt:  ARCRQAILVANSF

A0A6J1JD53 uncharacterized protein LOC111483306

1.5e-94

84.98

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Query:  MASFHLHFLSAPNPILILPQSQPIFTNPLQITSKRDFSIKCSSQDSESNPNFPSPDPNFSALNQPESFPIEKRRRSEIVRQRRPTTDMAKPEPPNFEIGW
        MA  HLH L APNP+L+LPQSQP FTNPLQIT KR  S+KCSS+ SES+PNFPSPDP+F ALNQPESFP+EKRRRSEIVRQRRP+ ++ KPEPPNFEIGW
Subjt:  MASFHLHFLSAPNPILILPQSQPIFTNPLQITSKRDFSIKCSSQDSESNPNFPSPDPNFSALNQPESFPIEKRRRSEIVRQRRPTTDMAKPEPPNFEIGW

Query:  KRTKEINLEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILREDGKVEERMVTELFRVLKLMEMDLAMVKAAVKEETLSERLGQAK
        KRTKEINLEKP+GWMIMDFLEKLE LMEREFGSTELLAKVGEIVAERAREEAEIL +DGKVE+RMVTELFRVLKLMEMDLAMVKAAV++ETL++RL QAK
Subjt:  KRTKEINLEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILREDGKVEERMVTELFRVLKLMEMDLAMVKAAVKEETLSERLGQAK

Query:  ARCRQAILVANSF
        ARCRQAILVANSF
Subjt:  ARCRQAILVANSF

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G51100.1 unknown protein

1.3e-61

70.47

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Query:  PIFTNPLQITSKRDFSIKCSSQDSESNPNFPSPDPNFSALN--QPESFPIEKRRRSEIVRQRRPTTDMAKPEPPNFEIGWKRTKEINLEKPIGWMIMDFL
        PI TN   +     FS KCSS + ES   F +  P   ++N    E FPIEKRRRSEI+R  R    + KPEPPNFEIGWKRTKEINLEKP G++IMDFL
Subjt:  PIFTNPLQITSKRDFSIKCSSQDSESNPNFPSPDPNFSALN--QPESFPIEKRRRSEIVRQRRPTTDMAKPEPPNFEIGWKRTKEINLEKPIGWMIMDFL

Query:  EKLEGLMEREFGSTELLAKVGEIVAERAREEAEILREDGKVEERMVTELFRVLKLMEMDLAMVKAAVKEETLSERLGQAKARCRQAILVANSF
        EK E LM REFGS ELLAK GEIVAERAREEAE+LR++GKVEERMVTELFRVLKLMEMDLAMVKA+VK+ETLS+R+ QA+ARCRQAILVANSF
Subjt:  EKLEGLMEREFGSTELLAKVGEIVAERAREEAEILREDGKVEERMVTELFRVLKLMEMDLAMVKAAVKEETLSERLGQAKARCRQAILVANSF

Sequences

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CDS sequence

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ATGGCTTCCTTTCACCTCCATTTCCTCTCTGCCCCAAATCCCATTCTTATTCTCCCTCAATCTCAGCCCATTTTCACAAACCCATTACAAATTACATCAAAACGTGACTT
CTCAATCAAATGCAGCTCACAAGATTCCGAGTCCAACCCGAATTTCCCATCCCCAGATCCGAACTTCAGCGCCCTAAATCAACCAGAGAGCTTCCCAATAGAGAAGCGAA
GAAGATCCGAAATAGTCCGGCAAAGAAGACCCACAACAGACATGGCAAAGCCGGAGCCGCCGAACTTCGAAATCGGGTGGAAGAGAACGAAAGAGATCAATCTGGAGAAG
CCGATCGGGTGGATGATAATGGATTTTCTGGAGAAGCTTGAAGGGTTAATGGAAAGGGAATTTGGGTCGACGGAATTGCTTGCGAAAGTGGGAGAGATTGTGGCGGAGAG
GGCGAGAGAGGAGGCGGAGATCTTGCGAGAGGACGGGAAAGTGGAGGAGAGAATGGTAACAGAGCTGTTTAGGGTTTTGAAATTGATGGAAATGGATTTGGCTATGGTGA
AAGCGGCTGTGAAGGAGGAAACGTTGAGTGAGCGGCTTGGTCAGGCCAAAGCAAGGTGTAGGCAAGCTATACTTGTTGCTAATTCTTTCTGA

mRNA sequence

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Protein sequence

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MASFHLHFLSAPNPILILPQSQPIFTNPLQITSKRDFSIKCSSQDSESNPNFPSPDPNFSALNQPESFPIEKRRRSEIVRQRRPTTDMAKPEPPNFEIGWKRTKEINLEK
PIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILREDGKVEERMVTELFRVLKLMEMDLAMVKAAVKEETLSERLGQAKARCRQAILVANSF

Lsi05G006360 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome