; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi05G006450 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G006450
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionWD repeat-containing protein 25
Genome locationchr05:8153894..8154259
RNA-Seq ExpressionLsi05G006450
SyntenyLsi05G006450
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR001680 - WD40 repeat
IPR015943 - WD40/YVTN repeat-like-containing domain superfamily
IPR036322 - WD40-repeat-containing domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_011650540.1 WD repeat-containing protein 25 isoform X1 [Cucumis sativus]3.4e-6195.04Show/hide
Query:  MEAYTCPSVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYGSHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYKSSLLMHKLKAFEQACIDIAI
        MEAYTCPSVRCHP DPAFIAQSNGGYIAIFSLNPPFKLDKYKRY SHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYKSSLL+HKLKA EQACIDIAI
Subjt:  MEAYTCPSVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYGSHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYKSSLLMHKLKAFEQACIDIAI

Query:  HPTLPNVIASSSWNGKIAVFQ
        HPTLPNVIAS SWNGKI+VFQ
Subjt:  HPTLPNVIASSSWNGKIAVFQ

XP_011650541.1 WD repeat-containing protein 25 isoform X3 [Cucumis sativus]3.4e-6195.04Show/hide
Query:  MEAYTCPSVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYGSHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYKSSLLMHKLKAFEQACIDIAI
        MEAYTCPSVRCHP DPAFIAQSNGGYIAIFSLNPPFKLDKYKRY SHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYKSSLL+HKLKA EQACIDIAI
Subjt:  MEAYTCPSVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYGSHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYKSSLLMHKLKAFEQACIDIAI

Query:  HPTLPNVIASSSWNGKIAVFQ
        HPTLPNVIAS SWNGKI+VFQ
Subjt:  HPTLPNVIASSSWNGKIAVFQ

XP_016901209.1 PREDICTED: WD repeat-containing protein 25 isoform X1 [Cucumis melo]2.6e-6195.04Show/hide
Query:  MEAYTCPSVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYGSHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYKSSLLMHKLKAFEQACIDIAI
        MEAYTCPSVRCHPFDPAFIAQSNG YIAIFSLNPPFKLDKYKRY SHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYKSSLL+HKLKA EQACIDIAI
Subjt:  MEAYTCPSVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYGSHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYKSSLLMHKLKAFEQACIDIAI

Query:  HPTLPNVIASSSWNGKIAVFQ
        HPTLPNVIAS SWNGKI+VFQ
Subjt:  HPTLPNVIASSSWNGKIAVFQ

XP_031738523.1 WD repeat-containing protein 25 isoform X2 [Cucumis sativus]3.4e-6195.04Show/hide
Query:  MEAYTCPSVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYGSHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYKSSLLMHKLKAFEQACIDIAI
        MEAYTCPSVRCHP DPAFIAQSNGGYIAIFSLNPPFKLDKYKRY SHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYKSSLL+HKLKA EQACIDIAI
Subjt:  MEAYTCPSVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYGSHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYKSSLLMHKLKAFEQACIDIAI

Query:  HPTLPNVIASSSWNGKIAVFQ
        HPTLPNVIAS SWNGKI+VFQ
Subjt:  HPTLPNVIASSSWNGKIAVFQ

XP_038903500.1 WD repeat-containing protein 25 [Benincasa hispida]4.0e-6295.87Show/hide
Query:  MEAYTCPSVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYGSHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYKSSLLMHKLKAFEQACIDIAI
        MEAYTCPSVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRY SHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYKSSLL+HKLKA EQACIDIAI
Subjt:  MEAYTCPSVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYGSHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYKSSLLMHKLKAFEQACIDIAI

Query:  HPTLPNVIASSSWNGKIAVFQ
        HPTLPNVIAS SWNGKI+VFQ
Subjt:  HPTLPNVIASSSWNGKIAVFQ

TrEMBL top hitse value%identityAlignment
A0A0A0L568 WD_REPEATS_REGION domain-containing protein1.6e-6195.04Show/hide
Query:  MEAYTCPSVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYGSHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYKSSLLMHKLKAFEQACIDIAI
        MEAYTCPSVRCHP DPAFIAQSNGGYIAIFSLNPPFKLDKYKRY SHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYKSSLL+HKLKA EQACIDIAI
Subjt:  MEAYTCPSVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYGSHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYKSSLLMHKLKAFEQACIDIAI

Query:  HPTLPNVIASSSWNGKIAVFQ
        HPTLPNVIAS SWNGKI+VFQ
Subjt:  HPTLPNVIASSSWNGKIAVFQ

A0A1S4DZ03 WD repeat-containing protein 25 isoform X11.3e-6195.04Show/hide
Query:  MEAYTCPSVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYGSHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYKSSLLMHKLKAFEQACIDIAI
        MEAYTCPSVRCHPFDPAFIAQSNG YIAIFSLNPPFKLDKYKRY SHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYKSSLL+HKLKA EQACIDIAI
Subjt:  MEAYTCPSVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYGSHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYKSSLLMHKLKAFEQACIDIAI

Query:  HPTLPNVIASSSWNGKIAVFQ
        HPTLPNVIAS SWNGKI+VFQ
Subjt:  HPTLPNVIASSSWNGKIAVFQ

A0A6J1CMQ5 WD repeat-containing protein 251.4e-5787.6Show/hide
Query:  MEAYTCPSVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYGSHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYKSSLLMHKLKAFEQACIDIAI
        MEAYTCP VRCHPFDP FIAQSNG Y+AIFSLNPPFKLDKYKRY SHGVSGFPIKCNFSLD KQIISGSSDGS+YFYDYKSSLL+ K KAFE ACID+AI
Subjt:  MEAYTCPSVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYGSHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYKSSLLMHKLKAFEQACIDIAI

Query:  HPTLPNVIASSSWNGKIAVFQ
        HP LPNVIAS SWNG IAVFQ
Subjt:  HPTLPNVIASSSWNGKIAVFQ

A0A6J1FN47 WD repeat-containing protein 251.0e-5890.08Show/hide
Query:  MEAYTCPSVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYGSHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYKSSLLMHKLKAFEQACIDIAI
        MEAYTCP VRCHPFDP FIAQSNG YIAIFSLNPPFKLDKYKRYGSH VSGFPIKCNFSLD KQIISGSSDGSIYFYDYKSSLL+HKLKA EQAC D+AI
Subjt:  MEAYTCPSVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYGSHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYKSSLLMHKLKAFEQACIDIAI

Query:  HPTLPNVIASSSWNGKIAVFQ
        HPTLPNVIAS SWNG I+VFQ
Subjt:  HPTLPNVIASSSWNGKIAVFQ

A0A6J1JQD9 WD repeat-containing protein 254.9e-5889.26Show/hide
Query:  MEAYTCPSVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYGSHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYKSSLLMHKLKAFEQACIDIAI
        MEAYTCP VRCHPFDP FIAQSNG YIAIFSLNPPFKLDKYKRYGSH VSGFPIKC+FSLD KQIISGSSDGSIYFYDYKSSLL+HKLKA EQAC D+AI
Subjt:  MEAYTCPSVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYGSHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYKSSLLMHKLKAFEQACIDIAI

Query:  HPTLPNVIASSSWNGKIAVFQ
        HPTLPNVIAS SWNG I VFQ
Subjt:  HPTLPNVIASSSWNGKIAVFQ

SwissProt top hitse value%identityAlignment
E9Q349 WD repeat-containing protein 253.8e-2336.13Show/hide
Query:  EAYTCPSVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYGSHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYKSSLLMHKLKAFEQACIDIAIH
        E YTCPS+  HP +P F+AQ+NG Y+A+FS   P+++ + +RY  H V G+ + C  S     +++GS+DG +  + ++++     L+   QAC+    H
Subjt:  EAYTCPSVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYGSHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYKSSLLMHKLKAFEQACIDIAIH

Query:  PTLPNVIASSSWNGKIAVF
        P LP+V+ + SW G I ++
Subjt:  PTLPNVIASSSWNGKIAVF

O60508 Pre-mRNA-processing factor 178.8e-1229.06Show/hide
Query:  YTCPSVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYGSHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYKSSLLMHKLKAFEQACIDIAIHPT
        ++ P+V   P       QS    I IF     F+L+K K +  H V+G+  + +FS D   +ISG  +G +  +D+K++ L  + KA ++ CI    HP 
Subjt:  YTCPSVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYGSHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYKSSLLMHKLKAFEQACIDIAIHPT

Query:  LPNVIASSSWNGKIAVF
          + + +  W+G I ++
Subjt:  LPNVIASSSWNGKIAVF

Q64LD2 WD repeat-containing protein 251.0e-2336.13Show/hide
Query:  EAYTCPSVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYGSHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYKSSLLMHKLKAFEQACIDIAIH
        E +TCPS+  HP +P F+AQ+NG Y+A+FS   P+++ + +RY  H V G+ + C  S     +++GS+DG +  Y ++++     L+   QAC+    H
Subjt:  EAYTCPSVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYGSHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYKSSLLMHKLKAFEQACIDIAIH

Query:  PTLPNVIASSSWNGKIAVF
        P LP+V+A+ SW G + ++
Subjt:  PTLPNVIASSSWNGKIAVF

Q9CAA0 Coatomer subunit beta'-15.2e-0431.19Show/hide
Query:  SVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYGSHGVSGFPIKCNFSLDAKQ-IISGSSDGSIYFYDYKSSLLMHKLKAFEQACID----IAIHP
        SV  HP +P  +A    G + I++      +       S  V+  P++    +  KQ +++G+ D  I  Y+Y +   M K+K FE A  D    +A+HP
Subjt:  SVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYGSHGVSGFPIKCNFSLDAKQ-IISGSSDGSIYFYDYKSSLLMHKLKAFEQACID----IAIHP

Query:  TLPNVIASS
        TLP V++SS
Subjt:  TLPNVIASS

Q9DC48 Pre-mRNA-processing factor 178.8e-1229.06Show/hide
Query:  YTCPSVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYGSHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYKSSLLMHKLKAFEQACIDIAIHPT
        ++ P+V   P       QS    I IF     F+L+K K +  H V+G+  + +FS D   +ISG  +G +  +D+K++ L  + KA ++ CI    HP 
Subjt:  YTCPSVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYGSHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYKSSLLMHKLKAFEQACIDIAIHPT

Query:  LPNVIASSSWNGKIAVF
          + + +  W+G I ++
Subjt:  LPNVIASSSWNGKIAVF

Arabidopsis top hitse value%identityAlignment
AT1G10580.1 Transducin/WD40 repeat-like superfamily protein2.1e-1634.21Show/hide
Query:  YTCPSVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYGSHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYKSSLLMHKLKAFEQACIDIAIHPT
        ++ PS+  HP      AQS    I I+S    F+L+K KR+  H V+G+  + NFS D + ++SG  +G  +F+D+KS  +   LK     CI    HP 
Subjt:  YTCPSVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYGSHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYKSSLLMHKLKAFEQACIDIAIHPT

Query:  LPNVIASSSWNGKI
          + +A+  W+G I
Subjt:  LPNVIASSSWNGKI

AT1G79990.1 structural molecules3.7e-0531.19Show/hide
Query:  SVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYGSHGVSGFPIKCNFSLDAKQ-IISGSSDGSIYFYDYKSSLLMHKLKAFEQACID----IAIHP
        SV  HP +P  +A    G + I++      +       S  V+  P++    +  KQ +++G+ D  I  Y+Y +   M K+K FE A  D    +A+HP
Subjt:  SVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYGSHGVSGFPIKCNFSLDAKQ-IISGSSDGSIYFYDYKSSLLMHKLKAFEQACID----IAIHP

Query:  TLPNVIASS
        TLP V++SS
Subjt:  TLPNVIASS

AT1G79990.3 structural molecules3.7e-0531.19Show/hide
Query:  SVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYGSHGVSGFPIKCNFSLDAKQ-IISGSSDGSIYFYDYKSSLLMHKLKAFEQACID----IAIHP
        SV  HP +P  +A    G + I++      +       S  V+  P++    +  KQ +++G+ D  I  Y+Y +   M K+K FE A  D    +A+HP
Subjt:  SVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYGSHGVSGFPIKCNFSLDAKQ-IISGSSDGSIYFYDYKSSLLMHKLKAFEQACID----IAIHP

Query:  TLPNVIASS
        TLP V++SS
Subjt:  TLPNVIASS

AT1G79990.5 structural molecules3.7e-0531.19Show/hide
Query:  SVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYGSHGVSGFPIKCNFSLDAKQ-IISGSSDGSIYFYDYKSSLLMHKLKAFEQACID----IAIHP
        SV  HP +P  +A    G + I++      +       S  V+  P++    +  KQ +++G+ D  I  Y+Y +   M K+K FE A  D    +A+HP
Subjt:  SVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYGSHGVSGFPIKCNFSLDAKQ-IISGSSDGSIYFYDYKSSLLMHKLKAFEQACID----IAIHP

Query:  TLPNVIASS
        TLP V++SS
Subjt:  TLPNVIASS

AT5G54520.1 Transducin/WD40 repeat-like superfamily protein8.6e-4763.64Show/hide
Query:  MEAYTCPSVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYGSHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYKSSLLMHKLKAFEQACIDIAI
        +EAYTCP ++ HP DP FIAQS+G Y AIFS NPPFKL+KYKR+  H V+GFPIKCNFS D + + SGSSDGS+Y YDYKS+ L+ KLKA+EQ C++++ 
Subjt:  MEAYTCPSVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYGSHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYKSSLLMHKLKAFEQACIDIAI

Query:  HPTLPNVIASSSWNGKIAVFQ
        HP LPNV+A+ SWNG+++VF+
Subjt:  HPTLPNVIASSSWNGKIAVFQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGCCTACACTTGTCCATCTGTGAGATGCCACCCCTTTGATCCAGCTTTTATCGCCCAATCGAATGGAGGTTATATTGCAATATTCTCTCTAAATCCACCTTTCAA
GTTAGACAAATACAAGAGGTATGGAAGTCATGGAGTCTCGGGCTTTCCAATAAAATGTAACTTCAGCCTTGATGCCAAGCAGATCATCTCTGGTTCTTCAGATGGCTCTA
TATATTTTTATGATTATAAATCCTCCTTGCTTATGCATAAACTAAAAGCATTTGAACAGGCTTGCATAGACATTGCCATCCACCCGACCTTACCTAATGTAATTGCTTCG
AGCAGTTGGAATGGGAAGATCGCAGTGTTCCAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGCCTACACTTGTCCATCTGTGAGATGCCACCCCTTTGATCCAGCTTTTATCGCCCAATCGAATGGAGGTTATATTGCAATATTCTCTCTAAATCCACCTTTCAA
GTTAGACAAATACAAGAGGTATGGAAGTCATGGAGTCTCGGGCTTTCCAATAAAATGTAACTTCAGCCTTGATGCCAAGCAGATCATCTCTGGTTCTTCAGATGGCTCTA
TATATTTTTATGATTATAAATCCTCCTTGCTTATGCATAAACTAAAAGCATTTGAACAGGCTTGCATAGACATTGCCATCCACCCGACCTTACCTAATGTAATTGCTTCG
AGCAGTTGGAATGGGAAGATCGCAGTGTTCCAGTGA
Protein sequenceShow/hide protein sequence
MEAYTCPSVRCHPFDPAFIAQSNGGYIAIFSLNPPFKLDKYKRYGSHGVSGFPIKCNFSLDAKQIISGSSDGSIYFYDYKSSLLMHKLKAFEQACIDIAIHPTLPNVIAS
SSWNGKIAVFQ