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Lsi05G006550 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G006550
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionSesquiterpene synthase Tps1
Genome locationchr05:8378387..8400945
RNA-Seq ExpressionLsi05G006550
SyntenyLsi05G006550
Gene Ontology termsGO:0016102 - diterpenoid biosynthetic process (biological process)
GO:0000287 - magnesium ion binding (molecular function)
GO:0010333 - terpene synthase activity (molecular function)
InterPro domainsIPR005630 - Terpene synthase, metal-binding domain
IPR008949 - Isoprenoid synthase domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8650158.1 hypothetical protein Csa_009547 [Cucumis sativus]1.1e-1875.38Show/hide
Query:  YKPKFEDYMEVASVTSGYALLATISFVCMGDIATKEVFDWLLECPKTLEASTIICRLMDDVVSCK
        YKPK+ +YMEVA  +SGY LL+TISFVCMGDIATKEVF+WL +CPK L+AST I RLMDDVVS K
Subjt:  YKPKFEDYMEVASVTSGYALLATISFVCMGDIATKEVFDWLLECPKTLEASTIICRLMDDVVSCK

NP_001292628.1 (+)-gamma-cadinene synthase [Cucumis sativus]3.1e-1873.85Show/hide
Query:  YKPKFEDYMEVASVTSGYALLATISFVCMGDIATKEVFDWLLECPKTLEASTIICRLMDDVVSCK
        YKPK+ +YMEVA  +SGY LL+TISFVCMGDIATKEVF+WL +CP+ L+AST I RLMDDVVS K
Subjt:  YKPKFEDYMEVASVTSGYALLATISFVCMGDIATKEVFDWLLECPKTLEASTIICRLMDDVVSCK

NP_001315388.1 (+)-gamma-cadinene synthase-like [Cucumis melo]7.3e-2076.92Show/hide
Query:  YKPKFEDYMEVASVTSGYALLATISFVCMGDIATKEVFDWLLECPKTLEASTIICRLMDDVVSCK
        YKPK+E+YMEVA  +SGY LL+TISFVCMGDIATKE+FDWL +CPK L+AST I RLMDDVVS K
Subjt:  YKPKFEDYMEVASVTSGYALLATISFVCMGDIATKEVFDWLLECPKTLEASTIICRLMDDVVSCK

XP_038903601.1 (+)-gamma-cadinene synthase-like [Benincasa hispida]3.3e-2080.95Show/hide
Query:  YKPKFEDYMEVASVTSGYALLATISFVCMGDIATKEVFDWLLECPKTLEASTIICRLMDDVVS
        +KP FE YMEVASV+SGYALLATISF CMGD+AT+EVFDW+ ECPK LEASTII RLMDD+VS
Subjt:  YKPKFEDYMEVASVTSGYALLATISFVCMGDIATKEVFDWLLECPKTLEASTIICRLMDDVVS

XP_038905757.1 (+)-gamma-cadinene synthase-like [Benincasa hispida]3.3e-2081.54Show/hide
Query:  YKPKFEDYMEVASVTSGYALLATISFVCMGDIATKEVFDWLLECPKTLEASTIICRLMDDVVSCK
        YKPKFE+YMEVA V+SGY LL TISF CMGDIATKEVFDWL ECPK LEASTII RL +DVVS K
Subjt:  YKPKFEDYMEVASVTSGYALLATISFVCMGDIATKEVFDWLLECPKTLEASTIICRLMDDVVSCK

TrEMBL top hitse value%identityAlignment
A0A0A0L337 Uncharacterized protein3.1e-1674.14Show/hide
Query:  YKPKFEDYMEVASVTSGYALLATISFVCMGDIATKEVFDWLLECPKTLEASTIICRLM
        YKPK+E+YMEVA  TSGY LL+TISF+ MGDIATKEVFDWL +CPK L+AS+IICR +
Subjt:  YKPKFEDYMEVASVTSGYALLATISFVCMGDIATKEVFDWLLECPKTLEASTIICRLM

A0A0A0L579 Uncharacterized protein5.1e-1975.38Show/hide
Query:  YKPKFEDYMEVASVTSGYALLATISFVCMGDIATKEVFDWLLECPKTLEASTIICRLMDDVVSCK
        YKPK+ +YMEVA  +SGY LL+TISFVCMGDIATKEVF+WL +CPK L+AST I RLMDDVVS K
Subjt:  YKPKFEDYMEVASVTSGYALLATISFVCMGDIATKEVFDWLLECPKTLEASTIICRLMDDVVSCK

A0A0B4VEV4 Sesquiterpene synthase Tps13.5e-2076.92Show/hide
Query:  YKPKFEDYMEVASVTSGYALLATISFVCMGDIATKEVFDWLLECPKTLEASTIICRLMDDVVSCK
        YKPK+E+YMEVA  +SGY LL+TISFVCMGDIATKE+FDWL +CPK L+AST I RLMDDVVS K
Subjt:  YKPKFEDYMEVASVTSGYALLATISFVCMGDIATKEVFDWLLECPKTLEASTIICRLMDDVVSCK

A0A1S4DZR2 (+)-gamma-cadinene synthase-like1.0e-1975.38Show/hide
Query:  YKPKFEDYMEVASVTSGYALLATISFVCMGDIATKEVFDWLLECPKTLEASTIICRLMDDVVSCK
        YKPK+E+YMEVA  +SGY LL+TISFVCMGDIAT+E+FDWL +CPK L+AST I RLMDDVVS K
Subjt:  YKPKFEDYMEVASVTSGYALLATISFVCMGDIATKEVFDWLLECPKTLEASTIICRLMDDVVSCK

Q66PX8 Beta-caryophyllene synthase1.5e-1873.85Show/hide
Query:  YKPKFEDYMEVASVTSGYALLATISFVCMGDIATKEVFDWLLECPKTLEASTIICRLMDDVVSCK
        YKPK+ +YMEVA  +SGY LL+TISFVCMGDIATKEVF+WL +CP+ L+AST I RLMDDVVS K
Subjt:  YKPKFEDYMEVASVTSGYALLATISFVCMGDIATKEVFDWLLECPKTLEASTIICRLMDDVVSCK

SwissProt top hitse value%identityAlignment
B5A435 Sesquiterpene synthase1.5e-1547.87Show/hide
Query:  VKKVVEGFERPNKLSICERELWRVTFGHLYKPKFEDYMEVASVTSGYALLATISFVCMGDIATKEVFDWLLECPKTLEASTIICRLMDDVVSCK
        +KK+VEG+   ++   C  +         Y P FE+YM VA VTSGY  L TIS++ MG+IA+KE FDWL   P  +EAS  +CRLMDD+ S K
Subjt:  VKKVVEGFERPNKLSICERELWRVTFGHLYKPKFEDYMEVASVTSGYALLATISFVCMGDIATKEVFDWLLECPKTLEASTIICRLMDDVVSCK

F6M8H6 Probable sesquiterpene synthase4.3e-1545.16Show/hide
Query:  DVKKVVEGFERPNKLSICERELWRVTFGHLYKPKFEDYMEVASVTSGYALLATISFVCMGDIATKEVFDWLLECPKTLEASTIICRLMDDVVS
        ++KK+VEG+   ++   C  +         Y P F++YM VA VT+GY  L TIS++ MG+IA+KE FDWL   P  +EAS  +CRLMDD+ S
Subjt:  DVKKVVEGFERPNKLSICERELWRVTFGHLYKPKFEDYMEVASVTSGYALLATISFVCMGDIATKEVFDWLLECPKTLEASTIICRLMDDVVS

O49853 (+)-delta-cadinene synthase isozyme C22.8e-1437.9Show/hide
Query:  IDCLKERKQPFWLLLITI--DVKKVVEGFERPNKLSICERELWRVTFGHL---------YKPKFEDYMEVASVTSGYALLATISFVCMGDIATKEVFDWL
        ID L E  +P +  L+ +  +++++V    R  ++   +  + R+   +L         YKP FE++   A  T GYA+LA  SFV MGDI T E F W 
Subjt:  IDCLKERKQPFWLLLITI--DVKKVVEGFERPNKLSICERELWRVTFGHL---------YKPKFEDYMEVASVTSGYALLATISFVCMGDIATKEVFDWL

Query:  LECPKTLEASTIICRLMDDVVSCK
           PK ++ASTIICR MDDV   K
Subjt:  LECPKTLEASTIICRLMDDVVSCK

P93665 (+)-delta-cadinene synthase2.8e-1437.9Show/hide
Query:  IDCLKERKQPFWLLLITI--DVKKVVEGFERPNKLSICERELWRVTFGHL---------YKPKFEDYMEVASVTSGYALLATISFVCMGDIATKEVFDWL
        ID L E  +P +  L+ +  +++++V    R  ++   +  + R+   +L         YKP FE++   A  T GYA+LA  SFV MGDI T E F W 
Subjt:  IDCLKERKQPFWLLLITI--DVKKVVEGFERPNKLSICERELWRVTFGHL---------YKPKFEDYMEVASVTSGYALLATISFVCMGDIATKEVFDWL

Query:  LECPKTLEASTIICRLMDDVVSCK
           PK ++ASTIICR MDDV   K
Subjt:  LECPKTLEASTIICRLMDDVVSCK

Q39760 (+)-delta-cadinene synthase isozyme XC142.8e-1437.9Show/hide
Query:  IDCLKERKQPFWLLLITI--DVKKVVEGFERPNKLSICERELWRVTFGHL---------YKPKFEDYMEVASVTSGYALLATISFVCMGDIATKEVFDWL
        ID L E  +P +  L+ +  +++++V    R  ++   +  + R+   +L         YKP FE++   A  T GYA+LA  SFV MGDI T E F W 
Subjt:  IDCLKERKQPFWLLLITI--DVKKVVEGFERPNKLSICERELWRVTFGHL---------YKPKFEDYMEVASVTSGYALLATISFVCMGDIATKEVFDWL

Query:  LECPKTLEASTIICRLMDDVVSCK
           PK ++ASTIICR MDDV   K
Subjt:  LECPKTLEASTIICRLMDDVVSCK

Arabidopsis top hitse value%identityAlignment
AT3G32030.1 Terpenoid cyclases/Protein prenyltransferases superfamily protein1.2e-0738.1Show/hide
Query:  YKPKFEDYMEVASVTSGYALLATISFVCMGDIATKEVFDWLLECPKTLEASTIICRLMDDVVS
        Y P F++YMEV  VT G    A  SF+ M D   K +++W    PK L+A +++ R+ +D+V+
Subjt:  YKPKFEDYMEVASVTSGYALLATISFVCMGDIATKEVFDWLLECPKTLEASTIICRLMDDVVS

AT4G20200.1 Terpenoid cyclases/Protein prenyltransferases superfamily protein4.0e-0836.94Show/hide
Query:  IDCLKERKQPFWLLLITIDVKKVVEGFERPNKLSICERELWRVTFGHLYKPKFEDYMEVASV-TSGYALLATISFVCMGDIATKEVFDWLLECPKTLEAS
        +D  +E K+       +  V   +E F+   K +I + E W     H+  P FE+YMEV  V  + YA LA I F+ MG +ATKE F+WL   PK ++  
Subjt:  IDCLKERKQPFWLLLITIDVKKVVEGFERPNKLSICERELWRVTFGHLYKPKFEDYMEVASV-TSGYALLATISFVCMGDIATKEVFDWLLECPKTLEAS

Query:  TIICRLMDDVV
        +I  RLM+D++
Subjt:  TIICRLMDDVV

AT5G23960.1 terpene synthase 212.6e-0742.86Show/hide
Query:  YKPKFEDYMEVASVTSGYALLATISFVCMGDIATKEVFDWLLECPKTLEASTIICRLMDDVVS
        Y   F++Y E A ++SGY  L  ++FV M D+A  + F+WL   PK   AS II R  DD+ S
Subjt:  YKPKFEDYMEVASVTSGYALLATISFVCMGDIATKEVFDWLLECPKTLEASTIICRLMDDVVS

AT5G23960.2 terpene synthase 212.6e-0742.86Show/hide
Query:  YKPKFEDYMEVASVTSGYALLATISFVCMGDIATKEVFDWLLECPKTLEASTIICRLMDDVVS
        Y   F++Y E A ++SGY  L  ++FV M D+A  + F+WL   PK   AS II R  DD+ S
Subjt:  YKPKFEDYMEVASVTSGYALLATISFVCMGDIATKEVFDWLLECPKTLEASTIICRLMDDVVS

AT5G48110.1 Terpenoid cyclases/Protein prenyltransferases superfamily protein2.0e-0740Show/hide
Query:  YKPKFEDYMEVASVTSGYALLATISFVCMGDIATKEVFDWLLECPKTLEASTIICRLMDDVVSCK
        Y P +++YMEV  VT G  +    +F+ MG+ A KE FDW+   PK ++   +  RL DDV + K
Subjt:  YKPKFEDYMEVASVTSGYALLATISFVCMGDIATKEVFDWLLECPKTLEASTIICRLMDDVVSCK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTATTGATTGCTTAAAAGAACGAAAACAACCATTTTGGTTACTTTTAATAACTATAGATGTTAAGAAGGTGGTGGAAGGATTTGAGCGTCCCAACAAACTTTCCAT
TTGCGAGAGAGAATTGTGGAGAGTTACTTTTGGACATTTGTATAAACCAAAATTTGAAGATTACATGGAAGTGGCTTCAGTTACCTCAGGTTATGCACTACTTGCAACTA
TTTCATTTGTTTGCATGGGTGACATTGCAACAAAGGAGGTATTTGATTGGCTTTTAGAATGCCCTAAAACTCTTGAAGCCTCAACCATCATTTGTAGACTCATGGACGAT
GTTGTCTCCTGCAAGCCCTACTTTATTCAAATGAGGATGGATACACAAACGCTAATGTTAGAACTAAACAATGACCAGAGG
mRNA sequenceShow/hide mRNA sequence
ATGTCTATTGATTGCTTAAAAGAACGAAAACAACCATTTTGGTTACTTTTAATAACTATAGATGTTAAGAAGGTGGTGGAAGGATTTGAGCGTCCCAACAAACTTTCCAT
TTGCGAGAGAGAATTGTGGAGAGTTACTTTTGGACATTTGTATAAACCAAAATTTGAAGATTACATGGAAGTGGCTTCAGTTACCTCAGGTTATGCACTACTTGCAACTA
TTTCATTTGTTTGCATGGGTGACATTGCAACAAAGGAGGTATTTGATTGGCTTTTAGAATGCCCTAAAACTCTTGAAGCCTCAACCATCATTTGTAGACTCATGGACGAT
GTTGTCTCCTGCAAGCCCTACTTTATTCAAATGAGGATGGATACACAAACGCTAATGTTAGAACTAAACAATGACCAGAGG
Protein sequenceShow/hide protein sequence
MSIDCLKERKQPFWLLLITIDVKKVVEGFERPNKLSICERELWRVTFGHLYKPKFEDYMEVASVTSGYALLATISFVCMGDIATKEVFDWLLECPKTLEASTIICRLMDD
VVSCKPYFIQMRMDTQTLMLELNNDQR