; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi05G006670 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G006670
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr05:8791816..8792811
RNA-Seq ExpressionLsi05G006670
SyntenyLsi05G006670
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032018.1 Gag-pro-like protein [Cucumis melo var. makuwa]3.5e-2068.6Show/hide
Query:  MFVTKTSALPYVEVVEEAFECSYRSFEIANATIFLTEGLDLNRYMSRTSIMNAKMMIING--LNGGLGKNNKENPEVIFLPKAKER
        MFVTKTSALPYVE  EEA ECSYRSFEI NATIF TEGL ++RY+S+TSIM  K MI +G  +  GL K N+ + EVIFLPKAKE+
Subjt:  MFVTKTSALPYVEVVEEAFECSYRSFEIANATIFLTEGLDLNRYMSRTSIMNAKMMIING--LNGGLGKNNKENPEVIFLPKAKER

KAA0033221.1 uncharacterized protein E6C27_scaffold845G00100 [Cucumis melo var. makuwa]1.1e-2639.06Show/hide
Query:  MFVTKTSALPYVEVVEEAFECSYRSFEIANATIFLTEGLDLNRYMSRTSIMNAKMMIING--LNGGLGKNNKENPEVIFLPKAKER--------------
        MFVTKTS LPYVE  EEA ECSYRSFE ANATIF TEGL ++RY+S+TS+M AK MI +G  ++ GLGK+N+ + EVI LPKAKE+              
Subjt:  MFVTKTSALPYVEVVEEAFECSYRSFEIANATIFLTEGLDLNRYMSRTSIMNAKMMIING--LNGGLGKNNKENPEVIFLPKAKER--------------

Query:  -------------------------------------------------DAE------DENINL------------------------------------
                                                         D+E       EN +L                                    
Subjt:  -------------------------------------------------DAE------DENINL------------------------------------

Query:  -----SVDFEVQICNLEQNM-EDECDVSPELLKMIEQEEKKTVPYQEPLEVINLGT
             +VDFEV ICNLEQN+ E E D+SPELL++IEQEEKKT+ YQE L VIN GT
Subjt:  -----SVDFEVQICNLEQNM-EDECDVSPELLKMIEQEEKKTVPYQEPLEVINLGT

KAA0043020.1 uncharacterized protein E6C27_scaffold75G00990 [Cucumis melo var. makuwa]2.8e-2538.37Show/hide
Query:  MFVTKTSALPYVEVVEEAFECSYRSFEIANATIFLTEGLDLNRYMSRTSIMNAKMMIIN--GLNGGLGKNNKENPEVIFLPKAKER--------------
        MFVTK S LPYVE  EEA ECSYRSFEIANATIF  EGL ++RY+S+TS+M AK MI +   ++ GLGK+N+ + +VI LPKAKE+              
Subjt:  MFVTKTSALPYVEVVEEAFECSYRSFEIANATIFLTEGLDLNRYMSRTSIMNAKMMIIN--GLNGGLGKNNKENPEVIFLPKAKER--------------

Query:  -------------------------------------------------DAE------DENINLS-----------------------------------
                                                         D+E       EN +LS                                   
Subjt:  -------------------------------------------------DAE------DENINLS-----------------------------------

Query:  ------VDFEVQICNLEQNME-DECDVSPELLKMIEQEEKKTVPYQEPLEVINLGTLQ
              VDF+V ICNLEQN+E  E D+SPELL++IEQEEKKT+ YQE L+VINLGTL+
Subjt:  ------VDFEVQICNLEQNME-DECDVSPELLKMIEQEEKKTVPYQEPLEVINLGTLQ

KAA0061241.1 uncharacterized protein E6C27_scaffold455G00760 [Cucumis melo var. makuwa]7.1e-2169.41Show/hide
Query:  MFVTKTSALPYVEVVEEAFECSYRSFEIANATIFLTEGLDLNRYMSRTSIMNAKMMIING--LNGGLGKNNKENPEVIFLPKAKE
        MFVTKTS LPYVE  EEA ECSYRSFEIANATIF TEGL ++RY+S+TS+M AK MI +G  ++ GLGK+N+ + EVI LPKAKE
Subjt:  MFVTKTSALPYVEVVEEAFECSYRSFEIANATIFLTEGLDLNRYMSRTSIMNAKMMIING--LNGGLGKNNKENPEVIFLPKAKE

TYK06500.1 uncharacterized protein E5676_scaffold70G00280 [Cucumis melo var. makuwa]7.5e-3146.05Show/hide
Query:  MFVTKTSALPYVEVVEEAFECSYRSFEIANATIFLTEGLDLNRYMSRTSIMNAKMMIIN--GLNGGLGKNNKENPEVIFLPKAKER--------------
        MFVTKTS LPYVE  EEA ECSYRSFEIANATIF  EGL ++RY+S+TS+M  K MI +   ++ GLGK+N+ + +VI LPKAKE+              
Subjt:  MFVTKTSALPYVEVVEEAFECSYRSFEIANATIFLTEGLDLNRYMSRTSIMNAKMMIIN--GLNGGLGKNNKENPEVIFLPKAKER--------------

Query:  ------DAE------DENINLS-----------------------------------------VDFEVQICNLEQNME-DECDVSPELLKMIEQEEKKTV
              D+E       EN +LS                                         VDF+V ICNLEQN+E  E D+SPELL++IEQEEKKT+
Subjt:  ------DAE------DENINLS-----------------------------------------VDFEVQICNLEQNME-DECDVSPELLKMIEQEEKKTV

Query:  PYQEPLEVINLGTLQ
         YQE L+VINLGTL+
Subjt:  PYQEPLEVINLGTLQ

TrEMBL top hitse value%identityAlignment
A0A5A7SMZ7 Gag-pro-like protein1.7e-2068.6Show/hide
Query:  MFVTKTSALPYVEVVEEAFECSYRSFEIANATIFLTEGLDLNRYMSRTSIMNAKMMIING--LNGGLGKNNKENPEVIFLPKAKER
        MFVTKTSALPYVE  EEA ECSYRSFEI NATIF TEGL ++RY+S+TSIM  K MI +G  +  GL K N+ + EVIFLPKAKE+
Subjt:  MFVTKTSALPYVEVVEEAFECSYRSFEIANATIFLTEGLDLNRYMSRTSIMNAKMMIING--LNGGLGKNNKENPEVIFLPKAKER

A0A5A7SUT0 Reverse transcriptase5.4e-2739.06Show/hide
Query:  MFVTKTSALPYVEVVEEAFECSYRSFEIANATIFLTEGLDLNRYMSRTSIMNAKMMIING--LNGGLGKNNKENPEVIFLPKAKER--------------
        MFVTKTS LPYVE  EEA ECSYRSFE ANATIF TEGL ++RY+S+TS+M AK MI +G  ++ GLGK+N+ + EVI LPKAKE+              
Subjt:  MFVTKTSALPYVEVVEEAFECSYRSFEIANATIFLTEGLDLNRYMSRTSIMNAKMMIING--LNGGLGKNNKENPEVIFLPKAKER--------------

Query:  -------------------------------------------------DAE------DENINL------------------------------------
                                                         D+E       EN +L                                    
Subjt:  -------------------------------------------------DAE------DENINL------------------------------------

Query:  -----SVDFEVQICNLEQNM-EDECDVSPELLKMIEQEEKKTVPYQEPLEVINLGT
             +VDFEV ICNLEQN+ E E D+SPELL++IEQEEKKT+ YQE L VIN GT
Subjt:  -----SVDFEVQICNLEQNM-EDECDVSPELLKMIEQEEKKTVPYQEPLEVINLGT

A0A5A7TI68 Uncharacterized protein1.3e-2538.37Show/hide
Query:  MFVTKTSALPYVEVVEEAFECSYRSFEIANATIFLTEGLDLNRYMSRTSIMNAKMMIIN--GLNGGLGKNNKENPEVIFLPKAKER--------------
        MFVTK S LPYVE  EEA ECSYRSFEIANATIF  EGL ++RY+S+TS+M AK MI +   ++ GLGK+N+ + +VI LPKAKE+              
Subjt:  MFVTKTSALPYVEVVEEAFECSYRSFEIANATIFLTEGLDLNRYMSRTSIMNAKMMIIN--GLNGGLGKNNKENPEVIFLPKAKER--------------

Query:  -------------------------------------------------DAE------DENINLS-----------------------------------
                                                         D+E       EN +LS                                   
Subjt:  -------------------------------------------------DAE------DENINLS-----------------------------------

Query:  ------VDFEVQICNLEQNME-DECDVSPELLKMIEQEEKKTVPYQEPLEVINLGTLQ
              VDF+V ICNLEQN+E  E D+SPELL++IEQEEKKT+ YQE L+VINLGTL+
Subjt:  ------VDFEVQICNLEQNME-DECDVSPELLKMIEQEEKKTVPYQEPLEVINLGTLQ

A0A5A7V681 Retrotrans_gag domain-containing protein3.4e-2169.41Show/hide
Query:  MFVTKTSALPYVEVVEEAFECSYRSFEIANATIFLTEGLDLNRYMSRTSIMNAKMMIING--LNGGLGKNNKENPEVIFLPKAKE
        MFVTKTS LPYVE  EEA ECSYRSFEIANATIF TEGL ++RY+S+TS+M AK MI +G  ++ GLGK+N+ + EVI LPKAKE
Subjt:  MFVTKTSALPYVEVVEEAFECSYRSFEIANATIFLTEGLDLNRYMSRTSIMNAKMMIING--LNGGLGKNNKENPEVIFLPKAKE

A0A5D3C587 Retrotrans_gag domain-containing protein3.6e-3146.05Show/hide
Query:  MFVTKTSALPYVEVVEEAFECSYRSFEIANATIFLTEGLDLNRYMSRTSIMNAKMMIIN--GLNGGLGKNNKENPEVIFLPKAKER--------------
        MFVTKTS LPYVE  EEA ECSYRSFEIANATIF  EGL ++RY+S+TS+M  K MI +   ++ GLGK+N+ + +VI LPKAKE+              
Subjt:  MFVTKTSALPYVEVVEEAFECSYRSFEIANATIFLTEGLDLNRYMSRTSIMNAKMMIIN--GLNGGLGKNNKENPEVIFLPKAKER--------------

Query:  ------DAE------DENINLS-----------------------------------------VDFEVQICNLEQNME-DECDVSPELLKMIEQEEKKTV
              D+E       EN +LS                                         VDF+V ICNLEQN+E  E D+SPELL++IEQEEKKT+
Subjt:  ------DAE------DENINLS-----------------------------------------VDFEVQICNLEQNME-DECDVSPELLKMIEQEEKKTV

Query:  PYQEPLEVINLGTLQ
         YQE L+VINLGTL+
Subjt:  PYQEPLEVINLGTLQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGTAACAAAAACATCAGCACTTCCTTATGTTGAAGTAGTTGAGGAAGCCTTTGAGTGCTCGTACAGATCGTTTGAGATTGCCAATGCCACTATCTTTCTCACTGA
GGGTTTAGATCTAAATCGCTATATGTCAAGAACTTCTATAATGAATGCAAAGATGATGATAATAAATGGTTTAAACGGAGGATTGGGAAAGAATAATAAAGAAAATCCAG
AGGTGATCTTTCTTCCTAAAGCTAAAGAGAGGGATGCTGAAGACGAAAACATCAATTTAAGTGTTGATTTTGAAGTTCAGATATGTAATCTCGAACAAAATATGGAAGAC
GAATGTGACGTATCGCCTGAGTTACTCAAGATGATAGAGCAAGAAGAAAAGAAGACAGTGCCATATCAAGAACCTTTAGAAGTTATTAATTTGGGGACACTGCAGAGGTG
A
mRNA sequenceShow/hide mRNA sequence
ATGTTTGTAACAAAAACATCAGCACTTCCTTATGTTGAAGTAGTTGAGGAAGCCTTTGAGTGCTCGTACAGATCGTTTGAGATTGCCAATGCCACTATCTTTCTCACTGA
GGGTTTAGATCTAAATCGCTATATGTCAAGAACTTCTATAATGAATGCAAAGATGATGATAATAAATGGTTTAAACGGAGGATTGGGAAAGAATAATAAAGAAAATCCAG
AGGTGATCTTTCTTCCTAAAGCTAAAGAGAGGGATGCTGAAGACGAAAACATCAATTTAAGTGTTGATTTTGAAGTTCAGATATGTAATCTCGAACAAAATATGGAAGAC
GAATGTGACGTATCGCCTGAGTTACTCAAGATGATAGAGCAAGAAGAAAAGAAGACAGTGCCATATCAAGAACCTTTAGAAGTTATTAATTTGGGGACACTGCAGAGGTG
A
Protein sequenceShow/hide protein sequence
MFVTKTSALPYVEVVEEAFECSYRSFEIANATIFLTEGLDLNRYMSRTSIMNAKMMIINGLNGGLGKNNKENPEVIFLPKAKERDAEDENINLSVDFEVQICNLEQNMED
ECDVSPELLKMIEQEEKKTVPYQEPLEVINLGTLQR