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Lsi05G006870 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G006870
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionProtein RRP5
Genome locationchr05:9150084..9152476
RNA-Seq ExpressionLsi05G006870
SyntenyLsi05G006870
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577394.1 Chlorophyll a-b binding protein 3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]1.4e-3385.86Show/hide
Query:  MAKNRNKKKRSGPISMDVTENTVHELPQAMDVSESAVHKPASGTLSLKSKKGRPMKRSKNVRKTKAMVKAISKSEQSTEKILKNQSKTTRIQSAKTLYE
        MAKN+NKKKRSG ISMD+TENT  ELPQAMDVSESAVHKPASG L+LK KKGRPMKRSKNVRKT A  KAISK+EQS EKILKNQSKTTRI SAKTLYE
Subjt:  MAKNRNKKKRSGPISMDVTENTVHELPQAMDVSESAVHKPASGTLSLKSKKGRPMKRSKNVRKTKAMVKAISKSEQSTEKILKNQSKTTRIQSAKTLYE

XP_008452291.1 PREDICTED: uncharacterized protein LOC103493362 [Cucumis melo]7.6e-3587.88Show/hide
Query:  MAKNRNKKKRSGPISMDVTENTVHELPQAMDVSESAVHKPASGTLSLKSKKGRPMKRSKNVRKTKAMVKAISKSEQSTEKILKNQSKTTRIQSAKTLYE
        MAKNRNKKKR G +SMDVTEN+VHELPQAMDVS S VHKPASG L LK KKGRPMKRSKNVRKTKA+ KAISKSEQS EKILKNQSKTTRIQSAKTLYE
Subjt:  MAKNRNKKKRSGPISMDVTENTVHELPQAMDVSESAVHKPASGTLSLKSKKGRPMKRSKNVRKTKAMVKAISKSEQSTEKILKNQSKTTRIQSAKTLYE

XP_022929206.1 uncharacterized protein LOC111435867 [Cucurbita moschata]1.4e-3385.86Show/hide
Query:  MAKNRNKKKRSGPISMDVTENTVHELPQAMDVSESAVHKPASGTLSLKSKKGRPMKRSKNVRKTKAMVKAISKSEQSTEKILKNQSKTTRIQSAKTLYE
        MAKN+NKKKRSG ISMD+TENT  ELPQAMDVSESAVHKPASG L+LK KKGRPMKRSKNVRKT A  KAISK+EQS EKILKNQSKTTRI SAKTLYE
Subjt:  MAKNRNKKKRSGPISMDVTENTVHELPQAMDVSESAVHKPASGTLSLKSKKGRPMKRSKNVRKTKAMVKAISKSEQSTEKILKNQSKTTRIQSAKTLYE

XP_022985277.1 uncharacterized protein LOC111483316 [Cucurbita maxima]1.2e-3285.86Show/hide
Query:  MAKNRNKKKRSGPISMDVTENTVHELPQAMDVSESAVHKPASGTLSLKSKKGRPMKRSKNVRKTKAMVKAISKSEQSTEKILKNQSKTTRIQSAKTLYE
        MAKN+N KKRSG ISMD+TENT HELPQAMDVSESAVHKPASG L+LK KKGRPMKRSKNVRKT A  KAISK+EQS EKILKNQSKTTRI SAKTLYE
Subjt:  MAKNRNKKKRSGPISMDVTENTVHELPQAMDVSESAVHKPASGTLSLKSKKGRPMKRSKNVRKTKAMVKAISKSEQSTEKILKNQSKTTRIQSAKTLYE

XP_038903593.1 uncharacterized protein LOC120090147 [Benincasa hispida]1.6e-3791.92Show/hide
Query:  MAKNRNKKKRSGPISMDVTENTVHELPQAMDVSESAVHKPASGTLSLKSKKGRPMKRSKNVRKTKAMVKAISKSEQSTEKILKNQSKTTRIQSAKTLYE
        MAKNRNKKKRSGP+SMDVTENTVHELPQAMDVSESAVHKP SG L+LK KKGRPMKRSKNVRKTKAM KAISKSEQSTEKILKNQSKT RIQSAK LYE
Subjt:  MAKNRNKKKRSGPISMDVTENTVHELPQAMDVSESAVHKPASGTLSLKSKKGRPMKRSKNVRKTKAMVKAISKSEQSTEKILKNQSKTTRIQSAKTLYE

TrEMBL top hitse value%identityAlignment
A0A1S3BUB2 uncharacterized protein LOC1034933623.7e-3587.88Show/hide
Query:  MAKNRNKKKRSGPISMDVTENTVHELPQAMDVSESAVHKPASGTLSLKSKKGRPMKRSKNVRKTKAMVKAISKSEQSTEKILKNQSKTTRIQSAKTLYE
        MAKNRNKKKR G +SMDVTEN+VHELPQAMDVS S VHKPASG L LK KKGRPMKRSKNVRKTKA+ KAISKSEQS EKILKNQSKTTRIQSAKTLYE
Subjt:  MAKNRNKKKRSGPISMDVTENTVHELPQAMDVSESAVHKPASGTLSLKSKKGRPMKRSKNVRKTKAMVKAISKSEQSTEKILKNQSKTTRIQSAKTLYE

A0A6A6MLZ5 Uncharacterized protein6.5e-2469.7Show/hide
Query:  MAKNRNKKKRSGPISMDVTENTVHELPQAMDVSESAVHKPASGTLSLKSKKGRPMKRSKNVRKTKAMVKAISKSEQSTEKILKNQSKTTRIQSAKTLYE
        MAKNRNKKK++G +SMD+TE TV ++PQAMD SES V K ASG  + K  KGRPMKRSKNVRK KA+ KAISK+EQS EK+LKN+SKT R QSAK LY+
Subjt:  MAKNRNKKKRSGPISMDVTENTVHELPQAMDVSESAVHKPASGTLSLKSKKGRPMKRSKNVRKTKAMVKAISKSEQSTEKILKNQSKTTRIQSAKTLYE

A0A6J1CP23 uncharacterized protein LOC1110127891.3e-2482.93Show/hide
Query:  MDVTENTVHELPQAMDVSESAVHKPASGTLSLKSKKGRPMKRSKNVRKTKAMVKAISKSEQSTEKILKNQSKTTRIQSAKTL
        MD+TENTV +LPQAMDVSES VHKP SG L+LK +KGRPMKRS+NVRKTKAM KAI KSEQS EKI+KNQSKTTRIQSAKTL
Subjt:  MDVTENTVHELPQAMDVSESAVHKPASGTLSLKSKKGRPMKRSKNVRKTKAMVKAISKSEQSTEKILKNQSKTTRIQSAKTL

A0A6J1EMH0 uncharacterized protein LOC1114358676.9e-3485.86Show/hide
Query:  MAKNRNKKKRSGPISMDVTENTVHELPQAMDVSESAVHKPASGTLSLKSKKGRPMKRSKNVRKTKAMVKAISKSEQSTEKILKNQSKTTRIQSAKTLYE
        MAKN+NKKKRSG ISMD+TENT  ELPQAMDVSESAVHKPASG L+LK KKGRPMKRSKNVRKT A  KAISK+EQS EKILKNQSKTTRI SAKTLYE
Subjt:  MAKNRNKKKRSGPISMDVTENTVHELPQAMDVSESAVHKPASGTLSLKSKKGRPMKRSKNVRKTKAMVKAISKSEQSTEKILKNQSKTTRIQSAKTLYE

A0A6J1J4F8 uncharacterized protein LOC1114833165.9e-3385.86Show/hide
Query:  MAKNRNKKKRSGPISMDVTENTVHELPQAMDVSESAVHKPASGTLSLKSKKGRPMKRSKNVRKTKAMVKAISKSEQSTEKILKNQSKTTRIQSAKTLYE
        MAKN+N KKRSG ISMD+TENT HELPQAMDVSESAVHKPASG L+LK KKGRPMKRSKNVRKT A  KAISK+EQS EKILKNQSKTTRI SAKTLYE
Subjt:  MAKNRNKKKRSGPISMDVTENTVHELPQAMDVSESAVHKPASGTLSLKSKKGRPMKRSKNVRKTKAMVKAISKSEQSTEKILKNQSKTTRIQSAKTLYE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G27380.1 unknown protein1.3e-0533.97Show/hide
Query:  MAKNRNKKKRSGPISMDVTEN-TVHE-LPQAMDVSESAVHKPASGTLSLKS-KKGRP-------------------------------------------
        M K RNKK R    SMDV+E+ +V E  PQ MD +E+   K AS   SL S +KG+P                                           
Subjt:  MAKNRNKKKRSGPISMDVTEN-TVHE-LPQAMDVSESAVHKPASGTLSLKS-KKGRP-------------------------------------------

Query:  -----------MKRSKNVRKTKAMVKAISKSEQSTEKILKNQSKTTRIQSAKTLYE
                   MKR+KN RK KA+ KAI+ SE+   K  K+++KT R  SAK LYE
Subjt:  -----------MKRSKNVRKTKAMVKAISKSEQSTEKILKNQSKTTRIQSAKTLYE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAAGAACAGGAATAAGAAGAAGCGAAGTGGGCCTATTTCAATGGACGTAACTGAGAATACCGTTCACGAGCTCCCTCAAGCGATGGACGTGTCTGAGTCTGCAGT
TCATAAACCAGCTTCCGGCACCCTCAGTTTAAAGTCGAAAAAGGGAAGGCCAATGAAGCGATCAAAGAATGTTAGGAAAACAAAAGCCATGGTGAAGGCCATATCTAAGA
GCGAGCAGTCGACGGAGAAAATTTTGAAAAATCAGAGCAAAACTACCAGAATACAATCTGCAAAAACATTGTATGAATGA
mRNA sequenceShow/hide mRNA sequence
CCGAAATTTGGTGCGAAGTTACTTCAAGCTTCTTTTTTTTTCGTCTTTAGGGTTTTCGTTGTCAATCTCCGCAGCTCTCATCTCTCGGCGATGGCGAAGAACAGGAATAA
GAAGAAGCGAAGTGGGCCTATTTCAATGGACGTAACTGAGAATACCGTTCACGAGCTCCCTCAAGCGATGGACGTGTCTGAGTCTGCAGTTCATAAACCAGCTTCCGGCA
CCCTCAGTTTAAAGTCGAAAAAGGGAAGGCCAATGAAGCGATCAAAGAATGTTAGGAAAACAAAAGCCATGGTGAAGGCCATATCTAAGAGCGAGCAGTCGACGGAGAAA
ATTTTGAAAAATCAGAGCAAAACTACCAGAATACAATCTGCAAAAACATTGTATGAATGACAGTATCATTTTTATACAAATGTTTCCTTAAATTGTAAAATTTATTTATT
TTTGTTCCCTTCATAGGCTTTTTATGTTACTTTCTCCACTCACCATTAAGTATTCAATTGTATCAACCCTGCAACTTCTAAGTTGCAAATTATTTGTGAATTCAAAGTTT
TTTTTTTTTTAAAAAAACGAGGAGATTATGGGAGATTTTGTCATGTGGCGAATCACCTACAATGGCTATTGGTGCAATGTAGAATGTGCTCAAGTATTTAACTTTGGTTT
ATTTTGATGTTTTGTAGTTTATGTACTTTTTGAC
Protein sequenceShow/hide protein sequence
MAKNRNKKKRSGPISMDVTENTVHELPQAMDVSESAVHKPASGTLSLKSKKGRPMKRSKNVRKTKAMVKAISKSEQSTEKILKNQSKTTRIQSAKTLYE