CuGenDBv2

Gene ID	Lsi05G007010
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	mRNA splicing factor Cwf21 domain containing protein
Genome location	chr05:9333139..9345919
RNA-Seq Expression	Lsi05G007010
Synteny	Lsi05G007010
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7029765.1 Serine/arginine repetitive matrix protein 2, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.0e-17

65.85

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Query:  GYGTNGYIQMNKFFVRPKTGKIAERIRGY--NQGTTGVS----KDICEH-----IELQLVILKDKLIDQGYTADEVFEKLGE
        G GTNGYIQ NKFFVRPKTGK+AE  RG+  +QGT GVS    KDI EH     IEL+LVIL+DKL DQGYT DE+ +KL E
Subjt:  GYGTNGYIQMNKFFVRPKTGKIAERIRGY--NQGTTGVS----KDICEH-----IELQLVILKDKLIDQGYTADEVFEKLGE

XP_022131365.1 protein starmaker [Momordica charantia]

8.8e-18

68.29

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Query:  GYGTNGYIQMNKFFVRPKTGKIAERIRGY--NQGTTGVS----KDICEH-----IELQLVILKDKLIDQGYTADEVFEKLGE
        G GTNGYIQ NKFFVRPKTGK+AE  RG+  +QGT GVS    KDI EH     IEL+LVIL+DKLIDQGYT +EV EKL E
Subjt:  GYGTNGYIQMNKFFVRPKTGKIAERIRGY--NQGTTGVS----KDICEH-----IELQLVILKDKLIDQGYTADEVFEKLGE

XP_022997381.1 dentin sialophosphoprotein-like [Cucurbita maxima]

2.0e-17

65.85

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Query:  GYGTNGYIQMNKFFVRPKTGKIAERIRGY--NQGTTGVS----KDICEH-----IELQLVILKDKLIDQGYTADEVFEKLGE
        G GTNGYIQ NKFFVRPKTGK+AE  RG+  +QGT GVS    KDI EH     IEL+LVIL+DKL DQGYT DE+ +KL E
Subjt:  GYGTNGYIQMNKFFVRPKTGKIAERIRGY--NQGTTGVS----KDICEH-----IELQLVILKDKLIDQGYTADEVFEKLGE

XP_023545728.1 protein starmaker-like [Cucurbita pepo subsp. pepo]

2.0e-17

65.85

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Query:  GYGTNGYIQMNKFFVRPKTGKIAERIRGY--NQGTTGVS----KDICEH-----IELQLVILKDKLIDQGYTADEVFEKLGE
        G GTNGYIQ NKFFVRPKTGK+AE  RG+  +QGT GVS    KDI EH     IEL+LVIL+DKL DQGYT DE+ +KL E
Subjt:  GYGTNGYIQMNKFFVRPKTGKIAERIRGY--NQGTTGVS----KDICEH-----IELQLVILKDKLIDQGYTADEVFEKLGE

XP_038884695.1 dentin sialophosphoprotein-like [Benincasa hispida]

1.8e-18

68.29

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Query:  GYGTNGYIQMNKFFVRPKTGKIAERIRGY--NQGTTGVS----KDICEH-----IELQLVILKDKLIDQGYTADEVFEKLGE
        G GTNGYIQ NKFFVRPKTGK+AE  RG+  +QGT GVS    KDI EH     IEL+LVIL+DKLIDQGYT+DE+ EKL E
Subjt:  GYGTNGYIQMNKFFVRPKTGKIAERIRGY--NQGTTGVS----KDICEH-----IELQLVILKDKLIDQGYTADEVFEKLGE

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BBX0 dentin sialophosphoprotein-like

6.2e-17

65.85

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Query:  GYGTNGYIQMNKFFVRPKTGKIAERIRGY--NQGTTGVS----KDICEH-----IELQLVILKDKLIDQGYTADEVFEKLGE
        G GTNGYIQ NKFFVRPKTGK+AE  RG+  +QGT GVS    KDI EH     IEL+LVIL+DKL DQGYT  E+ EKL E
Subjt:  GYGTNGYIQMNKFFVRPKTGKIAERIRGY--NQGTTGVS----KDICEH-----IELQLVILKDKLIDQGYTADEVFEKLGE

A0A5A7VCH8 Dentin sialophosphoprotein-like

6.2e-17

65.85

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Query:  GYGTNGYIQMNKFFVRPKTGKIAERIRGY--NQGTTGVS----KDICEH-----IELQLVILKDKLIDQGYTADEVFEKLGE
        G GTNGYIQ NKFFVRPKTGK+AE  RG+  +QGT GVS    KDI EH     IEL+LVIL+DKL DQGYT  E+ EKL E
Subjt:  GYGTNGYIQMNKFFVRPKTGKIAERIRGY--NQGTTGVS----KDICEH-----IELQLVILKDKLIDQGYTADEVFEKLGE

A0A6J1BPI2 protein starmaker

4.3e-18

68.29

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Query:  GYGTNGYIQMNKFFVRPKTGKIAERIRGY--NQGTTGVS----KDICEH-----IELQLVILKDKLIDQGYTADEVFEKLGE
        G GTNGYIQ NKFFVRPKTGK+AE  RG+  +QGT GVS    KDI EH     IEL+LVIL+DKLIDQGYT +EV EKL E
Subjt:  GYGTNGYIQMNKFFVRPKTGKIAERIRGY--NQGTTGVS----KDICEH-----IELQLVILKDKLIDQGYTADEVFEKLGE

A0A6J1ESM6 dentin sialophosphoprotein-like

9.5e-18

65.85

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Query:  GYGTNGYIQMNKFFVRPKTGKIAERIRGY--NQGTTGVS----KDICEH-----IELQLVILKDKLIDQGYTADEVFEKLGE
        G GTNGYIQ NKFFVRPKTGK+AE  RG+  +QGT GVS    KDI EH     IEL+LVIL+DKL DQGYT DE+ +KL E
Subjt:  GYGTNGYIQMNKFFVRPKTGKIAERIRGY--NQGTTGVS----KDICEH-----IELQLVILKDKLIDQGYTADEVFEKLGE

A0A6J1K7B6 dentin sialophosphoprotein-like

9.5e-18

65.85

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Query:  GYGTNGYIQMNKFFVRPKTGKIAERIRGY--NQGTTGVS----KDICEH-----IELQLVILKDKLIDQGYTADEVFEKLGE
        G GTNGYIQ NKFFVRPKTGK+AE  RG+  +QGT GVS    KDI EH     IEL+LVIL+DKL DQGYT DE+ +KL E
Subjt:  GYGTNGYIQMNKFFVRPKTGKIAERIRGY--NQGTTGVS----KDICEH-----IELQLVILKDKLIDQGYTADEVFEKLGE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G49601.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: mRNA splicing factor, Cwf21 (InterPro:IPR013170); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

2.6e-12

49.4

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Query:  GYGTNGYIQMNKFFVRPKT-GKIAERIRGY--NQGTTGVSKD----ICEH-----IELQLVILKDKLIDQGYTADEVFEKLGE
        G GTNGY+Q NKFFVRP+  GK  +  +G+  ++GT G+SK     I EH     I L+L IL+DKL DQGY+  E+ +KL E
Subjt:  GYGTNGYIQMNKFFVRPKT-GKIAERIRGY--NQGTTGVSKD----ICEH-----IELQLVILKDKLIDQGYTADEVFEKLGE

Sequences

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CDS sequence

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ATGGGATATGGCACTAATGGCTACATCCAGATGAACAAGTTTTTTGTGAGGCCAAAGACTGGAAAGATTGCTGAAAGGATTAGAGGATACAATCAGGGCACTACTGGAGT
TTCTAAAGACATTTGCGAACATATTGAACTCCAACTTGTCATACTTAAGGACAAGCTCATTGACCAAGGGTATACAGCGGATGAAGTTTTTGAAAAGTTGGGGGAGTATT
CATTCTTCAAGTCTCCTTAA

mRNA sequence

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Protein sequence

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MGYGTNGYIQMNKFFVRPKTGKIAERIRGYNQGTTGVSKDICEHIELQLVILKDKLIDQGYTADEVFEKLGEYSFFKSP

Lsi05G007010 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome