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Lsi05G007320 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G007320
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRAB GTPase 11C
Genome locationchr05:9990929..9992448
RNA-Seq ExpressionLsi05G007320
SyntenyLsi05G007320
Gene Ontology termsGO:0005768 - endosome (cellular component)
GO:0005794 - Golgi apparatus (cellular component)
GO:0003924 - GTPase activity (molecular function)
GO:0005525 - GTP binding (molecular function)
InterPro domainsIPR001806 - Small GTPase
IPR027417 - P-loop containing nucleoside triphosphate hydrolase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008452243.1 PREDICTED: ras-related protein RABA2a [Cucumis melo]1.2e-22100Show/hide
Query:  MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV
        MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV
Subjt:  MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV

XP_022136956.1 ras-related protein RABA2a [Momordica charantia]1.2e-22100Show/hide
Query:  MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV
        MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV
Subjt:  MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV

XP_022929370.1 ras-related protein RABA2a [Cucurbita moschata]1.2e-22100Show/hide
Query:  MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV
        MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV
Subjt:  MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV

XP_022984392.1 ras-related protein RABA2a [Cucurbita maxima]1.2e-22100Show/hide
Query:  MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV
        MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV
Subjt:  MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV

XP_023517501.1 ras-related protein RABA2a-like [Cucurbita pepo subsp. pepo]1.2e-22100Show/hide
Query:  MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV
        MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV
Subjt:  MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV

TrEMBL top hitse value%identityAlignment
A0A0A0L6P8 Uncharacterized protein6.0e-23100Show/hide
Query:  MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV
        MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV
Subjt:  MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV

A0A1S3BTD1 ras-related protein RABA2a6.0e-23100Show/hide
Query:  MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV
        MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV
Subjt:  MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV

A0A6J1C4Z3 ras-related protein RABA2a6.0e-23100Show/hide
Query:  MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV
        MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV
Subjt:  MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV

A0A6J1J221 ras-related protein RABA2a6.0e-23100Show/hide
Query:  MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV
        MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV
Subjt:  MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV

A0A6J1JQR7 ras-related protein RABA2a-like6.0e-23100Show/hide
Query:  MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV
        MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV
Subjt:  MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV

SwissProt top hitse value%identityAlignment
O04486 Ras-related protein RABA2a1.4e-2496.43Show/hide
Query:  MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV
        MARRPD++YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV
Subjt:  MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV

Q39434 Ras-related protein Rab2BV2.9e-2289.29Show/hide
Query:  MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV
        MA R D +YDYLFK+VLIGDSGVGKSN+LSRFTRNEFCLESKSTIGVEFATRTLQV
Subjt:  MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV

Q39572 Ras-related protein YPTC62.2e-2289.29Show/hide
Query:  MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV
        M+ +PDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEF LESKSTIGVEFATR++QV
Subjt:  MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV

Q40193 Ras-related protein Rab11C2.9e-2289.29Show/hide
Query:  MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV
        MA R D +YDYLFK+VLIGDSGVGKSN+LSRFTRNEFCLESKSTIGVEFATRTLQV
Subjt:  MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV

Q9LNW1 Ras-related protein RABA2b3.8e-2289.29Show/hide
Query:  MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV
        MA R D +YDYLFK+VLIGDSGVGKSN+LSRFTRNEFCLESKSTIGVEFATRTLQV
Subjt:  MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV

Arabidopsis top hitse value%identityAlignment
AT1G07410.1 RAB GTPase homolog A2B2.7e-2389.29Show/hide
Query:  MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV
        MA R D +YDYLFK+VLIGDSGVGKSN+LSRFTRNEFCLESKSTIGVEFATRTLQV
Subjt:  MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV

AT1G09630.1 RAB GTPase 11C9.8e-2696.43Show/hide
Query:  MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV
        MARRPD++YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV
Subjt:  MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV

AT3G46830.1 RAB GTPase homolog A2C1.7e-2285.71Show/hide
Query:  MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV
        M  R D +YDYLFK+VLIGDSGVGKSN+LSRFTRNEFCLESKSTIGVEFATRT QV
Subjt:  MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV

AT4G18800.1 RAB GTPase homolog A1D8.6e-2290.74Show/hide
Query:  RPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVS
        R DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEF LESKSTIGVEFATR+L V+
Subjt:  RPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVS

AT5G59150.1 RAB GTPase homolog A2D3.5e-2387.5Show/hide
Query:  MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV
        MA R + DYDYLFK+VLIGDSGVGK+N+LSRFTRNEFCLESKSTIGVEFATRTLQV
Subjt:  MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCCGGAGACCCGACGATGACTATGATTACCTCTTCAAAGTTGTGCTAATCGGCGATTCAGGCGTTGGAAAATCCAACCTCCTTTCCCGATTCACTCGGAATGAGTT
TTGTTTGGAGTCCAAGTCCACCATTGGCGTCGAATTCGCCACTCGTACTCTTCAGGTATCTCTCTGTCTCTCTCTTCATTTCTCTCTCTCATTGTCATTGGTTAATGTGG
AACACGGTGGTGACTCCTTGCTAGATGACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCCCGGAGACCCGACGATGACTATGATTACCTCTTCAAAGTTGTGCTAATCGGCGATTCAGGCGTTGGAAAATCCAACCTCCTTTCCCGATTCACTCGGAATGAGTT
TTGTTTGGAGTCCAAGTCCACCATTGGCGTCGAATTCGCCACTCGTACTCTTCAGGTATCTCTCTGTCTCTCTCTTCATTTCTCTCTCTCATTGTCATTGGTTAATGTGG
AACACGGTGGTGACTCCTTGCTAGATGACTAG
Protein sequenceShow/hide protein sequence
MARRPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVSLCLSLHFSLSLSLVNVEHGGDSLLDD