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Lsi05G007670 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G007670
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description4-diphosphocytidyl-2C-methyl-D-erythritol synthase
Genome locationchr05:10787602..10789073
RNA-Seq ExpressionLsi05G007670
SyntenyLsi05G007670
Gene Ontology termsGO:0019288 - isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway (biological process)
GO:0050518 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity (molecular function)
InterPro domainsIPR029044 - Nucleotide-diphospho-sugar transferases
IPR034683 - Cytidylyltransferase IspD/TarI


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3440659.1 hypothetical protein FNV43_RR18943 [Rhamnella rubrinervis]4.6e-1792.31Show/hide
Query:  FCNREGLEVTDDVSIVEYLKHPVLITEGSYTNIKVTTPDDLLLAERILNLNS
        F NREGLEVTDDVSIVE+LKHPV ITEGSYTNIKVTTPDDLLLAERILN+NS
Subjt:  FCNREGLEVTDDVSIVEYLKHPVLITEGSYTNIKVTTPDDLLLAERILNLNS

RHN65147.1 putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Medicago truncatula]1.7e-1694Show/hide
Query:  NREGLEVTDDVSIVEYLKHPVLITEGSYTNIKVTTPDDLLLAERILNLNS
        NREGLEVTDDVSIVE+LKHPV ITEGSYTNIKVTTPDDLLLAERILN+NS
Subjt:  NREGLEVTDDVSIVEYLKHPVLITEGSYTNIKVTTPDDLLLAERILNLNS

XP_011650586.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic isoform X2 [Cucumis sativus]1.7e-1694Show/hide
Query:  NREGLEVTDDVSIVEYLKHPVLITEGSYTNIKVTTPDDLLLAERILNLNS
        NREGLEVTDDVSIVE+L+HPV ITEGSYTNIKVTTPDDLLLAERILNLNS
Subjt:  NREGLEVTDDVSIVEYLKHPVLITEGSYTNIKVTTPDDLLLAERILNLNS

XP_027190818.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic isoform X2 [Cicer arietinum]1.7e-1694Show/hide
Query:  NREGLEVTDDVSIVEYLKHPVLITEGSYTNIKVTTPDDLLLAERILNLNS
        NREGLEVTDDVSIVE+LKHPV ITEGSYTNIKVTTPDDLLLAERILN+NS
Subjt:  NREGLEVTDDVSIVEYLKHPVLITEGSYTNIKVTTPDDLLLAERILNLNS

XP_038904555.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic [Benincasa hispida]7.1e-18100Show/hide
Query:  NREGLEVTDDVSIVEYLKHPVLITEGSYTNIKVTTPDDLLLAERILNLNS
        NREGLEVTDDVSIVEYLKHPVLITEGSYTNIKVTTPDDLLLAERILNLNS
Subjt:  NREGLEVTDDVSIVEYLKHPVLITEGSYTNIKVTTPDDLLLAERILNLNS

TrEMBL top hitse value%identityAlignment
A0A140CWN8 4-diphosphocytidyl-2C-methyl-D-erythritol synthase8.4e-1794Show/hide
Query:  NREGLEVTDDVSIVEYLKHPVLITEGSYTNIKVTTPDDLLLAERILNLNS
        NREGLEVTDDVSIVEYLKHPV ITEGSYTNIKVTTPDDLLLAERIL++NS
Subjt:  NREGLEVTDDVSIVEYLKHPVLITEGSYTNIKVTTPDDLLLAERILNLNS

A0A224XH13 4-diphosphocytidyl-2C-methyl-D-erythritol synthase8.4e-1794Show/hide
Query:  NREGLEVTDDVSIVEYLKHPVLITEGSYTNIKVTTPDDLLLAERILNLNS
        NREGLEVTDDVSIVE+LKHPV ITEGSYTNIKVTTPDDLLLAERILN+NS
Subjt:  NREGLEVTDDVSIVEYLKHPVLITEGSYTNIKVTTPDDLLLAERILNLNS

A0A2K3PQ94 4-diphosphocytidyl-2C-methyl-D-erythritol synthase8.4e-1794Show/hide
Query:  NREGLEVTDDVSIVEYLKHPVLITEGSYTNIKVTTPDDLLLAERILNLNS
        NREGLEVTDDVSIVE+LKHPV ITEGSYTNIKVTTPDDLLLAERILN+NS
Subjt:  NREGLEVTDDVSIVEYLKHPVLITEGSYTNIKVTTPDDLLLAERILNLNS

A0A5A7V408 4-diphosphocytidyl-2C-methyl-D-erythritol synthase8.4e-1794Show/hide
Query:  NREGLEVTDDVSIVEYLKHPVLITEGSYTNIKVTTPDDLLLAERILNLNS
        NREGLEVTDDVSIVE+L+HPV ITEGSYTNIKVTTPDDLLLAERILNLNS
Subjt:  NREGLEVTDDVSIVEYLKHPVLITEGSYTNIKVTTPDDLLLAERILNLNS

A0A5D3D4T8 4-diphosphocytidyl-2C-methyl-D-erythritol synthase8.4e-1794Show/hide
Query:  NREGLEVTDDVSIVEYLKHPVLITEGSYTNIKVTTPDDLLLAERILNLNS
        NREGLEVTDDVSIVE+L+HPV ITEGSYTNIKVTTPDDLLLAERILNLNS
Subjt:  NREGLEVTDDVSIVEYLKHPVLITEGSYTNIKVTTPDDLLLAERILNLNS

SwissProt top hitse value%identityAlignment
A7Z0L2 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase2.0e-0744.66Show/hide
Query:  VGDSIGAAEGKGVTEAERGRDAVKFDWGGL-EVEGPGADLFSLDAAALSNFCNREGLEVTDDVSIVEYLK-HPVLITEGSYTNIKVTTPDDLLLAERILN
        V D+I  AEG  V E         FD   L  V+ P A   SL   A     N+ G   TDD S+VE L  + V I EGSYTNIK+TTPDDL+ AE I+ 
Subjt:  VGDSIGAAEGKGVTEAERGRDAVKFDWGGL-EVEGPGADLFSLDAAALSNFCNREGLEVTDDVSIVEYLK-HPVLITEGSYTNIKVTTPDDLLLAERILN

Query:  LNS
          S
Subjt:  LNS

A9KSU6 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase1.4e-0834.38Show/hide
Query:  DSIGAAEGKGVTEAERGRDAVKFDWGGLEVEGPGADLFSLDAAALSNFCNREGLEVTDDVSIVEYL-KHPVLITEGSYTNIKVTTPDDLLLAERIL
        D++  +   G+ ++   R+ V        ++ P A  +S+   A  N  + +G  +TDD  IVE L ++P+ + +G YTNIK+TTP+DL+ AE IL
Subjt:  DSIGAAEGKGVTEAERGRDAVKFDWGGLEVEGPGADLFSLDAAALSNFCNREGLEVTDDVSIVEYL-KHPVLITEGSYTNIKVTTPDDLLLAERIL

P69834 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic5.3e-1685.42Show/hide
Query:  EGLEVTDDVSIVEYLKHPVLITEGSYTNIKVTTPDDLLLAERILNLNS
        EGLEVTDDVSIVEYLKHPV +++GSYTNIKVTTPDDLLLAERIL+ +S
Subjt:  EGLEVTDDVSIVEYLKHPVLITEGSYTNIKVTTPDDLLLAERILNLNS

Q5N8G1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic4.0e-1689.13Show/hide
Query:  REGLEVTDDVSIVEYLKHPVLITEGSYTNIKVTTPDDLLLAERILN
        R+GLEVTDDVSIVEYLKH V ITEGSYTNIKVTTPDDLLLAER++N
Subjt:  REGLEVTDDVSIVEYLKHPVLITEGSYTNIKVTTPDDLLLAERILN

Q6MEE8 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase1.2e-0761.9Show/hide
Query:  LEVTDDVSIVEYLKHPVLITEGSYTNIKVTTPDDLLLAERIL
        L V+DDVS+VE +  PV + EGSY NIK+TTP+DLL+A+ IL
Subjt:  LEVTDDVSIVEYLKHPVLITEGSYTNIKVTTPDDLLLAERIL

Arabidopsis top hitse value%identityAlignment
AT2G02500.1 Nucleotide-diphospho-sugar transferases superfamily protein3.7e-1785.42Show/hide
Query:  EGLEVTDDVSIVEYLKHPVLITEGSYTNIKVTTPDDLLLAERILNLNS
        EGLEVTDDVSIVEYLKHPV +++GSYTNIKVTTPDDLLLAERIL+ +S
Subjt:  EGLEVTDDVSIVEYLKHPVLITEGSYTNIKVTTPDDLLLAERILNLNS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGGCTTTCTTGATGCAGTAGGAGACTCGATTGGGGCAGCAGAGGGAAAAGGGGTAACAGAGGCAGAGAGGGGACGCGATGCAGTTAAATTTGATTGGGGAGGCTT
GGAGGTAGAGGGACCTGGAGCTGATTTGTTTTCCTTAGATGCGGCTGCTCTTTCAAACTTTTGCAACCGGGAAGGCTTGGAAGTAACGGATGACGTTTCCATTGTGGAGT
ACTTGAAACATCCCGTGCTCATCACTGAAGGATCTTATACCAATATCAAGGTAACAACACCTGATGATTTATTACTTGCAGAGAGAATATTGAATTTGAACTCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATGGCTTTCTTGATGCAGTAGGAGACTCGATTGGGGCAGCAGAGGGAAAAGGGGTAACAGAGGCAGAGAGGGGACGCGATGCAGTTAAATTTGATTGGGGAGGCTT
GGAGGTAGAGGGACCTGGAGCTGATTTGTTTTCCTTAGATGCGGCTGCTCTTTCAAACTTTTGCAACCGGGAAGGCTTGGAAGTAACGGATGACGTTTCCATTGTGGAGT
ACTTGAAACATCCCGTGCTCATCACTGAAGGATCTTATACCAATATCAAGGTAACAACACCTGATGATTTATTACTTGCAGAGAGAATATTGAATTTGAACTCGTGAGAG
TCCTCTTGAGGACTAAACGACCATTGTCCTAACCTCTTAAATAATCAAAATACCTTGTAAGTTTCCCCCCATTTTTAAAGTGATGTAATTCAAAATTCAATTACAACATA
ATGTCAATGAGCATGATGTCGGCTTCTCAAATAAAAGTTTAAAGCATGAATGGTCCTGTTGAACAAATGGAGGTACAAAAACAGATAGGATGAAAATATGGAAGATATTG
AAATTTTTTCCTCATTATATAACAAGTTTAGTCCTTAAACTTTT
Protein sequenceShow/hide protein sequence
MDGFLDAVGDSIGAAEGKGVTEAERGRDAVKFDWGGLEVEGPGADLFSLDAAALSNFCNREGLEVTDDVSIVEYLKHPVLITEGSYTNIKVTTPDDLLLAERILNLNS