CuGenDBv2

Gene ID	Lsi05G007770
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	30S ribosomal protein S2, chloroplastic
Genome location	chr05:11097220..11097603
RNA-Seq Expression	Lsi05G007770
Synteny	Lsi05G007770
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0009507 - chloroplast (cellular component) GO:0015935 - small ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR001865 - Ribosomal protein S2 IPR005706 - Ribosomal protein S2, bacteria/mitochondria/plastid IPR023591 - Ribosomal protein S2, flavodoxin-like domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

AHM88761.1 ribosomal protein S2, partial [Lagenaria siceraria]

2.2e-58

99.12

Show/hide

Query:  MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTE
        MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTE
Subjt:  MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTE

Query:  TRLHKFRDLRTEQR
        TRLHKFRDLRTEQ+
Subjt:  TRLHKFRDLRTEQR

YP_009236269.1 ribosomal protein S2 [Gynostemma pentaphyllum]

2.2e-58

99.12

Show/hide

Query:  MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTE
        MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTE
Subjt:  MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTE

Query:  TRLHKFRDLRTEQR
        TRLHKFRDLRTEQ+
Subjt:  TRLHKFRDLRTEQR

YP_009430616.1 ribosomal protein S2 [Gynostemma cardiospermum]

2.2e-58

99.12

Show/hide

Query:  MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTE
        MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTE
Subjt:  MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTE

Query:  TRLHKFRDLRTEQR
        TRLHKFRDLRTEQ+
Subjt:  TRLHKFRDLRTEQR

YP_009439880.1 ribosomal protein S2 [Gynostemma caulopterum]

2.2e-58

99.12

Show/hide

Query:  MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTE
        MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTE
Subjt:  MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTE

Query:  TRLHKFRDLRTEQR
        TRLHKFRDLRTEQ+
Subjt:  TRLHKFRDLRTEQR

YP_010119723.1 ribosomal protein S2 [Hemsleya zhejiangensis]

2.2e-58

99.12

Show/hide

Query:  MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTE
        MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTE
Subjt:  MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTE

Query:  TRLHKFRDLRTEQR
        TRLHKFRDLRTEQ+
Subjt:  TRLHKFRDLRTEQR

TrEMBL top hits

e value

%identity

Alignment

A0A109WWM8 30S ribosomal protein S2, chloroplastic

1.0e-58

99.12

Show/hide

Query:  MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTE
        MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTE
Subjt:  MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTE

Query:  TRLHKFRDLRTEQR
        TRLHKFRDLRTEQ+
Subjt:  TRLHKFRDLRTEQR

A0A1P8LE54 Ribosomal protein S2

1.0e-58

99.12

Show/hide

Query:  MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTE
        MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTE
Subjt:  MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTE

Query:  TRLHKFRDLRTEQR
        TRLHKFRDLRTEQ+
Subjt:  TRLHKFRDLRTEQR

A0A2Z2CQF0 30S ribosomal protein S2, chloroplastic

1.0e-58

99.12

Show/hide

Query:  MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTE
        MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTE
Subjt:  MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTE

Query:  TRLHKFRDLRTEQR
        TRLHKFRDLRTEQ+
Subjt:  TRLHKFRDLRTEQR

X2F5D2 30S ribosomal protein S2, chloroplastic

1.0e-58

99.12

Show/hide

Query:  MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTE
        MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTE
Subjt:  MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTE

Query:  TRLHKFRDLRTEQR
        TRLHKFRDLRTEQ+
Subjt:  TRLHKFRDLRTEQR

X2F6M8 Ribosomal protein S2 (Fragment)

1.0e-58

99.12

Show/hide

Query:  MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTE
        MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTE
Subjt:  MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTE

Query:  TRLHKFRDLRTEQR
        TRLHKFRDLRTEQ+
Subjt:  TRLHKFRDLRTEQR

SwissProt top hits

e value

%identity

Alignment

A1XGM7 30S ribosomal protein S2, chloroplastic

2.6e-59

96.49

Show/hide

Query:  MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTE
        MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVA AA RARCHYVNKKWLGGMLTNWSTTE
Subjt:  MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTE

Query:  TRLHKFRDLRTEQR
        TRLHKFRDLR EQ+
Subjt:  TRLHKFRDLRTEQR

B1A924 30S ribosomal protein S2, chloroplastic

5.3e-60

97.37

Show/hide

Query:  MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTE
        MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHI NLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAA RARCHYVNKKWLGGMLTNWSTTE
Subjt:  MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTE

Query:  TRLHKFRDLRTEQR
        TRLHKFRDLRTEQ+
Subjt:  TRLHKFRDLRTEQR

Q0ZJ31 30S ribosomal protein S2, chloroplastic

5.9e-59

95.61

Show/hide

Query:  MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTE
        MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHI NLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAA +ARCHYVNKKWLGGM TNWSTTE
Subjt:  MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTE

Query:  TRLHKFRDLRTEQR
        TRLHKFRDLRTEQ+
Subjt:  TRLHKFRDLRTEQR

Q49L09 30S ribosomal protein S2, chloroplastic

3.1e-60

96.52

Show/hide

Query:  MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTE
        MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHI NLT+TARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAA RARCHYVNKKWLGGMLTNWSTTE
Subjt:  MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTE

Query:  TRLHKFRDLRTEQRA
        TRLHKFRDLRTEQ+A
Subjt:  TRLHKFRDLRTEQRA

Q4VZP4 30S ribosomal protein S2, chloroplastic

1.8e-60

97.37

Show/hide

Query:  MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTE
        MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAA+RGKQFLIVGTKNKAADSVARAATR RCHYVNKKWLGGMLTNWSTTE
Subjt:  MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTE

Query:  TRLHKFRDLRTEQR
        TRLHKFRDLRTEQ+
Subjt:  TRLHKFRDLRTEQR

Arabidopsis top hits

e value

%identity

Alignment

ATCG00160.1 ribosomal protein S2

4.6e-59

84.09

Show/hide

Query:  MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTE
        MM AGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAAD V+RAA RARCHYVNKKWLGGMLTNWSTTE
Subjt:  MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTE

Query:  TRLHKFRDLRTEQRAKS-----QRNFRVMNRE
         RLHKFRDLRTEQ+ +      +R+  V+ R+
Subjt:  TRLHKFRDLRTEQRAKS-----QRNFRVMNRE

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGATGGAAGCAGGAGTTCATTTTGGTCATGGTACTAGGAAATGGAATCCTAGAATGGCACCTTATATCTCTGCAAAACGTAAAGGTATTCATATTATAAATCTTACTAG
AACTGCTCGTTTTTTATCAGAAGCTTGTGATTTAGTTTTTGATGCAGCAAGTAGGGGCAAACAATTCTTAATTGTTGGTACCAAAAATAAAGCAGCGGATTCAGTAGCCC
GGGCTGCAACAAGGGCTCGGTGTCATTATGTTAATAAAAAATGGCTCGGGGGGATGTTAACAAATTGGTCTACTACAGAAACGAGACTTCATAAGTTCAGGGACTTGAGA
ACGGAACAAAGAGCAAAGAGCCAGAGAAACTTTCGAGTTATGAATCGGGAATAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MMEAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLIVGTKNKAADSVARAATRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLR
TEQRAKSQRNFRVMNRE

Lsi05G007770 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome