; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi05G007860 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G007860
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description1-deoxy-D-xylulose-5-phosphate synthase
Genome locationchr05:11322501..11326132
RNA-Seq ExpressionLsi05G007860
SyntenyLsi05G007860
Gene Ontology termsGO:0009228 - thiamine biosynthetic process (biological process)
GO:0016114 - terpenoid biosynthetic process (biological process)
GO:0052865 - 1-deoxy-D-xylulose 5-phosphate biosynthetic process (biological process)
GO:0008661 - 1-deoxy-D-xylulose-5-phosphate synthase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR005477 - Deoxyxylulose-5-phosphate synthase
IPR029061 - Thiamin diphosphate-binding fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008450191.1 PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Cucumis melo]1.7e-4076.47Show/hide
Query:  LFCRASRNELDIIGEERKM-------------VFSGEKPMTPLLDKVSYPIHMKNLSLQDVEELAAEVREEIVYSVSKSGGHLGSNLGTVELTVALHYVF
        L CRASRNE+D  GE+RK              VFSGEKP+TP LDKVSYPIHMKNLSLQDVEELAAE+REE+VYSVSKSGGHLGSNLGTVELTVALHYVF
Subjt:  LFCRASRNELDIIGEERKM-------------VFSGEKPMTPLLDKVSYPIHMKNLSLQDVEELAAEVREEIVYSVSKSGGHLGSNLGTVELTVALHYVF

Query:  NAPQDKIVWDVGHQVPQNK
        +APQDKIVWDVGHQ   +K
Subjt:  NAPQDKIVWDVGHQVPQNK

XP_018810057.1 probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Juglans regia]6.6e-3263.79Show/hide
Query:  FC-RASRNELDIIGEERKMV----------FSGEKPMTPLLDKVSYPIHMKNLSLQDVEELAAEVREEIVYSVSKSGGHLGSNLGTVELTVALHYVFNAP
        FC RAS + LD  GEERKM+          FSGEKP TPLLD ++YP+HMKNLS QD+E+L+AE+R +IVYSVSK+GGHL S+LG VEL VALH+VFN P
Subjt:  FC-RASRNELDIIGEERKMV----------FSGEKPMTPLLDKVSYPIHMKNLSLQDVEELAAEVREEIVYSVSKSGGHLGSNLGTVELTVALHYVFNAP

Query:  QDKIVWDVGHQVPQNK
        +DKI+WDVGHQ   +K
Subjt:  QDKIVWDVGHQVPQNK

XP_022136898.1 probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Momordica charantia]3.8e-3571.17Show/hide
Query:  LFCRASRNELDIIGEERKMVFS-----GEKPMTPLLDKVSYPIHMKNLSLQDVEELAAEVREEIVYSVSKSGGHLGSNLGTVELTVALHYVFNAPQDKIV
        L  RA RN  D  GEERKM  S     GEKP+TPLLD + YP+ +KNLSLQ+VEE+A E+REEIVYSVSKSGGHLGSNLGTVELT+ALHYVFNAPQDK++
Subjt:  LFCRASRNELDIIGEERKMVFS-----GEKPMTPLLDKVSYPIHMKNLSLQDVEELAAEVREEIVYSVSKSGGHLGSNLGTVELTVALHYVFNAPQDKIV

Query:  WDVGHQVPQNK
        WDVGHQ   +K
Subjt:  WDVGHQVPQNK

XP_023553267.1 probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Cucurbita pepo subsp. pepo]1.6e-3061.82Show/hide
Query:  ALFCRASRNELDIIGEER---KMVFSGEKPMTPLLDKVSYPIHMKNLSLQDVEELAAEVREEIVYSVSKSGGHLGSNLGTVELTVALHYVFNAPQDKIVW
        AL  + +  E+ ++G++     + +SGEKP TPLLD V+YPIHMKNLS +D+E+LAAE+R EIV+SVSKSGGHL S+LG VELTVALH+VFN P+DKI+W
Subjt:  ALFCRASRNELDIIGEER---KMVFSGEKPMTPLLDKVSYPIHMKNLSLQDVEELAAEVREEIVYSVSKSGGHLGSNLGTVELTVALHYVFNAPQDKIVW

Query:  DVGHQVPQNK
        DVGHQ   +K
Subjt:  DVGHQVPQNK

XP_041016516.1 probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Juglans microcarpa x Juglans regia]2.5e-3162.07Show/hide
Query:  LFCRASRNELDIIGEERKMV----------FSGEKPMTPLLDKVSYPIHMKNLSLQDVEELAAEVREEIVYSVSKSGGHLGSNLGTVELTVALHYVFNAP
        L  RA+ + LD  GEERKM+          FSGEKP TPLLD ++YP+HMKNLS QD+E+L+AE+R +IVYSVSK+GGHL S+LG VEL VALH+VFN P
Subjt:  LFCRASRNELDIIGEERKMV----------FSGEKPMTPLLDKVSYPIHMKNLSLQDVEELAAEVREEIVYSVSKSGGHLGSNLGTVELTVALHYVFNAP

Query:  QDKIVWDVGHQVPQNK
        +DKI+WDVGHQ   +K
Subjt:  QDKIVWDVGHQVPQNK

TrEMBL top hitse value%identityAlignment
A0A1S3BPP1 1-deoxy-D-xylulose-5-phosphate synthase8.4e-4176.47Show/hide
Query:  LFCRASRNELDIIGEERKM-------------VFSGEKPMTPLLDKVSYPIHMKNLSLQDVEELAAEVREEIVYSVSKSGGHLGSNLGTVELTVALHYVF
        L CRASRNE+D  GE+RK              VFSGEKP+TP LDKVSYPIHMKNLSLQDVEELAAE+REE+VYSVSKSGGHLGSNLGTVELTVALHYVF
Subjt:  LFCRASRNELDIIGEERKM-------------VFSGEKPMTPLLDKVSYPIHMKNLSLQDVEELAAEVREEIVYSVSKSGGHLGSNLGTVELTVALHYVF

Query:  NAPQDKIVWDVGHQVPQNK
        +APQDKIVWDVGHQ   +K
Subjt:  NAPQDKIVWDVGHQVPQNK

A0A1S3UWQ2 1-deoxy-D-xylulose-5-phosphate synthase1.3e-3072.22Show/hide
Query:  RKMVFSGEKPMTPLLDKVSYPIHMKNLSLQDVEELAAEVREEIVYSVSKSGGHLGSNLGTVELTVALHYVFNAPQDKIVWDVGHQVPQNK
        R + FSGEKP TP+LD V+YPIHMKNLS+Q++EELA E+REEIVY+VSK+GGHL S+LG  ELTVALH+VFN PQDKI+WDVGHQ   +K
Subjt:  RKMVFSGEKPMTPLLDKVSYPIHMKNLSLQDVEELAAEVREEIVYSVSKSGGHLGSNLGTVELTVALHYVFNAPQDKIVWDVGHQVPQNK

A0A2I4DSD7 1-deoxy-D-xylulose-5-phosphate synthase3.2e-3263.79Show/hide
Query:  FC-RASRNELDIIGEERKMV----------FSGEKPMTPLLDKVSYPIHMKNLSLQDVEELAAEVREEIVYSVSKSGGHLGSNLGTVELTVALHYVFNAP
        FC RAS + LD  GEERKM+          FSGEKP TPLLD ++YP+HMKNLS QD+E+L+AE+R +IVYSVSK+GGHL S+LG VEL VALH+VFN P
Subjt:  FC-RASRNELDIIGEERKMV----------FSGEKPMTPLLDKVSYPIHMKNLSLQDVEELAAEVREEIVYSVSKSGGHLGSNLGTVELTVALHYVFNAP

Query:  QDKIVWDVGHQVPQNK
        +DKI+WDVGHQ   +K
Subjt:  QDKIVWDVGHQVPQNK

A0A6J1C8S7 1-deoxy-D-xylulose-5-phosphate synthase1.8e-3571.17Show/hide
Query:  LFCRASRNELDIIGEERKMVFS-----GEKPMTPLLDKVSYPIHMKNLSLQDVEELAAEVREEIVYSVSKSGGHLGSNLGTVELTVALHYVFNAPQDKIV
        L  RA RN  D  GEERKM  S     GEKP+TPLLD + YP+ +KNLSLQ+VEE+A E+REEIVYSVSKSGGHLGSNLGTVELT+ALHYVFNAPQDK++
Subjt:  LFCRASRNELDIIGEERKMVFS-----GEKPMTPLLDKVSYPIHMKNLSLQDVEELAAEVREEIVYSVSKSGGHLGSNLGTVELTVALHYVFNAPQDKIV

Query:  WDVGHQVPQNK
        WDVGHQ   +K
Subjt:  WDVGHQVPQNK

A0A7J7I7B7 1-deoxy-D-xylulose-5-phosphate synthase1.0e-3060.87Show/hide
Query:  LFCRASRNELDIIGEERKMV-----------FSGEKPMTPLLDKVSYPIHMKNLSLQDVEELAAEVREEIVYSVSKSGGHLGSNLGTVELTVALHYVFNA
        L+ RA     +  GEE KM            FSGEKP TPLLD ++YP+HMKNLS+QD+E+LAAEVR +IV+SVSK+GGHL ++LG VELTVALH+VF+ 
Subjt:  LFCRASRNELDIIGEERKMV-----------FSGEKPMTPLLDKVSYPIHMKNLSLQDVEELAAEVREEIVYSVSKSGGHLGSNLGTVELTVALHYVFNA

Query:  PQDKIVWDVGHQVPQ
        PQDK++WDVGHQV Q
Subjt:  PQDKIVWDVGHQVPQ

SwissProt top hitse value%identityAlignment
B1J3G4 1-deoxy-D-xylulose-5-phosphate synthase6.5e-2251.81Show/hide
Query:  EKPMTPLLDKVSYPIHMKNLSLQDVEELAAEVREEIVYSVSKSGGHLGSNLGTVELTVALHYVFNAPQDKIVWDVGHQVPQNK
        E+P+TPLLD+   P  ++ L+  D+E LA E+R+E++Y+V ++GGH G+ LG +ELT+ALHYVF+ P D++VWDVGHQ   +K
Subjt:  EKPMTPLLDKVSYPIHMKNLSLQDVEELAAEVREEIVYSVSKSGGHLGSNLGTVELTVALHYVFNAPQDKIVWDVGHQVPQNK

O22567 1-deoxy-D-xylulose-5-phosphate synthase 1, chloroplastic4.2e-2964.37Show/hide
Query:  EERKMVFSGEKPMTPLLDKVSYPIHMKNLSLQDVEELAAEVREEIVYSVSKSGGHLGSNLGTVELTVALHYVFNAPQDKIVWDVGHQ
        E     +  ++P TPLLD V+YPIHMKNLSL+++++LA E+R ++++ VSK+GGHLGS+LG VELTVALHYVFN PQDKI+WDVGHQ
Subjt:  EERKMVFSGEKPMTPLLDKVSYPIHMKNLSLQDVEELAAEVREEIVYSVSKSGGHLGSNLGTVELTVALHYVFNAPQDKIVWDVGHQ

O78328 Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic7.9e-2866.67Show/hide
Query:  EKPMTPLLDKVSYPIHMKNLSLQDVEELAAEVREEIVYSVSKSGGHLGSNLGTVELTVALHYVFNAPQDKIVWDVGHQ
        ++P TP++D ++YPIHMKNLSL+++++LA E+R + +++VSK+GGHLGS+LG VELTVALHYVFNAPQD+I+WDVGHQ
Subjt:  EKPMTPLLDKVSYPIHMKNLSLQDVEELAAEVREEIVYSVSKSGGHLGSNLGTVELTVALHYVFNAPQDKIVWDVGHQ

Q38854 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic7.9e-2862.96Show/hide
Query:  FSGEKPMTPLLDKVSYPIHMKNLSLQDVEELAAEVREEIVYSVSKSGGHLGSNLGTVELTVALHYVFNAPQDKIVWDVGHQ
        +   +P TPLLD ++YPIHMKNLS++++++L+ E+R +++++VSK+GGHLGS+LG VELTVALHY+FN PQDKI+WDVGHQ
Subjt:  FSGEKPMTPLLDKVSYPIHMKNLSLQDVEELAAEVREEIVYSVSKSGGHLGSNLGTVELTVALHYVFNAPQDKIVWDVGHQ

Q6YU51 Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic6.5e-3066.29Show/hide
Query:  KMVFSGEKPMTPLLDKVSYPIHMKNLSLQDVEELAAEVREEIVYSVSKSGGHLGSNLGTVELTVALHYVFNAPQDKIVWDVGHQVPQNK
        K+ +SGEKP TPLLD V+YP+HMKNLS  ++E+LAAE+R EIV++VSK+GGHL S+LG VEL VALH+VF+ P+DKI+WDVGHQ   +K
Subjt:  KMVFSGEKPMTPLLDKVSYPIHMKNLSLQDVEELAAEVREEIVYSVSKSGGHLGSNLGTVELTVALHYVFNAPQDKIVWDVGHQVPQNK

Arabidopsis top hitse value%identityAlignment
AT3G21500.1 1-deoxy-D-xylulose 5-phosphate synthase 11.1e-2760.49Show/hide
Query:  FSGEKPMTPLLDKVSYPIHMKNLSLQDVEELAAEVREEIVYSVSKSGGHLGSNLGTVELTVALHYVFNAPQDKIVWDVGHQ
        +   +P TPLLD +++P+HMKNLS+++++ L+ E+R +++++VSK+GGHLGSNLG VELTVALHY+FN P DKI+WDVGHQ
Subjt:  FSGEKPMTPLLDKVSYPIHMKNLSLQDVEELAAEVREEIVYSVSKSGGHLGSNLGTVELTVALHYVFNAPQDKIVWDVGHQ

AT3G21500.2 1-deoxy-D-xylulose 5-phosphate synthase 11.1e-2760.49Show/hide
Query:  FSGEKPMTPLLDKVSYPIHMKNLSLQDVEELAAEVREEIVYSVSKSGGHLGSNLGTVELTVALHYVFNAPQDKIVWDVGHQ
        +   +P TPLLD +++P+HMKNLS+++++ L+ E+R +++++VSK+GGHLGSNLG VELTVALHY+FN P DKI+WDVGHQ
Subjt:  FSGEKPMTPLLDKVSYPIHMKNLSLQDVEELAAEVREEIVYSVSKSGGHLGSNLGTVELTVALHYVFNAPQDKIVWDVGHQ

AT4G15560.1 Deoxyxylulose-5-phosphate synthase5.6e-2962.96Show/hide
Query:  FSGEKPMTPLLDKVSYPIHMKNLSLQDVEELAAEVREEIVYSVSKSGGHLGSNLGTVELTVALHYVFNAPQDKIVWDVGHQ
        +   +P TPLLD ++YPIHMKNLS++++++L+ E+R +++++VSK+GGHLGS+LG VELTVALHY+FN PQDKI+WDVGHQ
Subjt:  FSGEKPMTPLLDKVSYPIHMKNLSLQDVEELAAEVREEIVYSVSKSGGHLGSNLGTVELTVALHYVFNAPQDKIVWDVGHQ

AT5G11380.1 1-deoxy-D-xylulose 5-phosphate synthase 37.4e-1340.91Show/hide
Query:  FSGEKPMTPLLDKVSYPIHMKNLSLQDVEELAAEVREEIVYSV--SKSGGHLGSNLGTVELTVALHYVFNAPQDKIVWDVGHQVPQNK
        +  EK  TP+LD +  P+ +KNLS+++++ LA E+R E+ +SV   K+   +  +   +ELT+ALHYVF AP D I+WD   Q   +K
Subjt:  FSGEKPMTPLLDKVSYPIHMKNLSLQDVEELAAEVREEIVYSV--SKSGGHLGSNLGTVELTVALHYVFNAPQDKIVWDVGHQVPQNK

AT5G11380.2 1-deoxy-D-xylulose 5-phosphate synthase 37.4e-1340.91Show/hide
Query:  FSGEKPMTPLLDKVSYPIHMKNLSLQDVEELAAEVREEIVYSV--SKSGGHLGSNLGTVELTVALHYVFNAPQDKIVWDVGHQVPQNK
        +  EK  TP+LD +  P+ +KNLS+++++ LA E+R E+ +SV   K+   +  +   +ELT+ALHYVF AP D I+WD   Q   +K
Subjt:  FSGEKPMTPLLDKVSYPIHMKNLSLQDVEELAAEVREEIVYSV--SKSGGHLGSNLGTVELTVALHYVFNAPQDKIVWDVGHQVPQNK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTTGTTTTGTAGGGCTTCAAGAAATGAGCTTGATATTATTGGAGAAGAGAGGAAGATGGTTTTCTCAGGAGAAAAACCAATGACGCCATTGTTGGACAAAGTTTC
TTATCCAATTCACATGAAGAATCTATCTCTTCAGGATGTTGAAGAACTTGCAGCAGAAGTTCGAGAAGAAATTGTGTATTCAGTTTCGAAATCAGGTGGCCATTTAGGTT
CAAACTTGGGAACTGTTGAGCTCACTGTAGCATTGCATTACGTCTTCAATGCACCTCAAGACAAGATCGTATGGGACGTTGGCCATCAGGTACCTCAAAACAAATTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGTTGTTTTGTAGGGCTTCAAGAAATGAGCTTGATATTATTGGAGAAGAGAGGAAGATGGTTTTCTCAGGAGAAAAACCAATGACGCCATTGTTGGACAAAGTTTC
TTATCCAATTCACATGAAGAATCTATCTCTTCAGGATGTTGAAGAACTTGCAGCAGAAGTTCGAGAAGAAATTGTGTATTCAGTTTCGAAATCAGGTGGCCATTTAGGTT
CAAACTTGGGAACTGTTGAGCTCACTGTAGCATTGCATTACGTCTTCAATGCACCTCAAGACAAGATCGTATGGGACGTTGGCCATCAGGTACCTCAAAACAAATTTTGA
Protein sequenceShow/hide protein sequence
MALFCRASRNELDIIGEERKMVFSGEKPMTPLLDKVSYPIHMKNLSLQDVEELAAEVREEIVYSVSKSGGHLGSNLGTVELTVALHYVFNAPQDKIVWDVGHQVPQNKF