CuGenDBv2

Gene ID	Lsi05G008010
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	50S ribosomal protein L23, chloroplastic
Genome location	chr05:11868067..11868405
RNA-Seq Expression	Lsi05G008010
Synteny	Lsi05G008010
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0009507 - chloroplast (cellular component) GO:0003729 - mRNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR001014 - Ribosomal protein L23/L25, conserved site IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR012678 - Ribosomal protein L23/L15e core domain superfamily IPR013025 - Ribosomal protein L25/L23

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

ATL59839.1 ribosomal protein L23 [Retiniphyllum pilosum]

6.5e-38

93.02

Show/hide

Query:  IFTDKSIRLLGKNEYTSNVGSGSTRTEIKHWVELFFGVKVIAVNSHRLSGKGRRMGPIMGHTMYYRRMIITLQPGYSIPPLRKKIT
        IFTDKSIRLLGKN+YTSNV SGSTRTEIKHWVELFFGVKVIA+NSHRL GKGRRMGPIMGHTM+YRRMIITLQPGYSIPPLRKK T
Subjt:  IFTDKSIRLLGKNEYTSNVGSGSTRTEIKHWVELFFGVKVIAVNSHRLSGKGRRMGPIMGHTMYYRRMIITLQPGYSIPPLRKKIT

QVX31861.1 ribosomal protein L23 [Salvia trijuga]

5.0e-38

90.7

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Query:  IFTDKSIRLLGKNEYTSNVGSGSTRTEIKHWVELFFGVKVIAVNSHRLSGKGRRMGPIMGHTMYYRRMIITLQPGYSIPPLRKKIT
        +FTDKSIRLLGKN+YTSNV SGSTRTE+KHWVELFFGVKVIA+NSHRLSGKGRRMGPIMGHTM+YRRMI+TLQPGYSIPPLRKK T
Subjt:  IFTDKSIRLLGKNEYTSNVGSGSTRTEIKHWVELFFGVKVIAVNSHRLSGKGRRMGPIMGHTMYYRRMIITLQPGYSIPPLRKKIT

YP_009306512.1 50S ribosomal protein L23 [Helwingia himalaica]

1.3e-38

93.02

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Query:  IFTDKSIRLLGKNEYTSNVGSGSTRTEIKHWVELFFGVKVIAVNSHRLSGKGRRMGPIMGHTMYYRRMIITLQPGYSIPPLRKKIT
        +FTDKSIRLLGKN+YTSNV SGSTRTEIKHWVELFFGVKVIA+NSHRL GKGRRMGPIMGHTM+YRRMIITLQPGYSIPPLRKKIT
Subjt:  IFTDKSIRLLGKNEYTSNVGSGSTRTEIKHWVELFFGVKVIAVNSHRLSGKGRRMGPIMGHTMYYRRMIITLQPGYSIPPLRKKIT

YP_009563030.1 50S ribosomal protein L23 [Huodendron biaristatum]

6.5e-38

93.02

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Query:  IFTDKSIRLLGKNEYTSNVGSGSTRTEIKHWVELFFGVKVIAVNSHRLSGKGRRMGPIMGHTMYYRRMIITLQPGYSIPPLRKKIT
        IFTDKSIRLLGKN+YTSNV SGSTRTEIKHWVELFFGVKVIA+NSHRL GKGRRMGPIMGHTM+YRRMIITLQPGYSIPPLRKK T
Subjt:  IFTDKSIRLLGKNEYTSNVGSGSTRTEIKHWVELFFGVKVIAVNSHRLSGKGRRMGPIMGHTMYYRRMIITLQPGYSIPPLRKKIT

YP_010147081.1 ribosomal protein L23 [Neopicrorhiza scrophulariiflora]

6.5e-38

91.86

Show/hide

Query:  IFTDKSIRLLGKNEYTSNVGSGSTRTEIKHWVELFFGVKVIAVNSHRLSGKGRRMGPIMGHTMYYRRMIITLQPGYSIPPLRKKIT
        +FTDKSIRLLGKN+YTSNV SGSTRTE+KHWVELFFGVKVIAVNSHRL GKGRRMGPIMGHTM+YRRMIITLQPGYSIPPLRKK T
Subjt:  IFTDKSIRLLGKNEYTSNVGSGSTRTEIKHWVELFFGVKVIAVNSHRLSGKGRRMGPIMGHTMYYRRMIITLQPGYSIPPLRKKIT

TrEMBL top hits

e value

%identity

Alignment

A0A1C9JC83 50S ribosomal protein L23, chloroplastic

6.4e-39

93.02

Show/hide

Query:  IFTDKSIRLLGKNEYTSNVGSGSTRTEIKHWVELFFGVKVIAVNSHRLSGKGRRMGPIMGHTMYYRRMIITLQPGYSIPPLRKKIT
        +FTDKSIRLLGKN+YTSNV SGSTRTEIKHWVELFFGVKVIA+NSHRL GKGRRMGPIMGHTM+YRRMIITLQPGYSIPPLRKKIT
Subjt:  IFTDKSIRLLGKNEYTSNVGSGSTRTEIKHWVELFFGVKVIAVNSHRLSGKGRRMGPIMGHTMYYRRMIITLQPGYSIPPLRKKIT

A0A2S1NSE2 50S ribosomal protein L23, chloroplastic

3.2e-38

93.02

Show/hide

Query:  IFTDKSIRLLGKNEYTSNVGSGSTRTEIKHWVELFFGVKVIAVNSHRLSGKGRRMGPIMGHTMYYRRMIITLQPGYSIPPLRKKIT
        IFTDKSIRLLGKN+YTSNV SGSTRTEIKHWVELFFGVKVIA+NSHRL GKGRRMGPIMGHTM+YRRMIITLQPGYSIPPLRKK T
Subjt:  IFTDKSIRLLGKNEYTSNVGSGSTRTEIKHWVELFFGVKVIAVNSHRLSGKGRRMGPIMGHTMYYRRMIITLQPGYSIPPLRKKIT

A0A481P5V5 50S ribosomal protein L23, chloroplastic

3.2e-38

93.02

Show/hide

Query:  IFTDKSIRLLGKNEYTSNVGSGSTRTEIKHWVELFFGVKVIAVNSHRLSGKGRRMGPIMGHTMYYRRMIITLQPGYSIPPLRKKIT
        IFTDKSIRLLGKN+YTSNV SGSTRTEIKHWVELFFGVKVIA+NSHRL GKGRRMGPIMGHTM+YRRMIITLQPGYSIPPLRKK T
Subjt:  IFTDKSIRLLGKNEYTSNVGSGSTRTEIKHWVELFFGVKVIAVNSHRLSGKGRRMGPIMGHTMYYRRMIITLQPGYSIPPLRKKIT

A0A7S6XW30 Ribosomal protein L23

3.2e-38

93.02

Show/hide

Query:  IFTDKSIRLLGKNEYTSNVGSGSTRTEIKHWVELFFGVKVIAVNSHRLSGKGRRMGPIMGHTMYYRRMIITLQPGYSIPPLRKKIT
        IFTDKSIRLLGKN+YTSNV SGSTRTEIKHWVELFFGVKVIA+NSHRL GKGRRMGPIMGHTM+YRRMIITLQPGYSIPPLRKK T
Subjt:  IFTDKSIRLLGKNEYTSNVGSGSTRTEIKHWVELFFGVKVIAVNSHRLSGKGRRMGPIMGHTMYYRRMIITLQPGYSIPPLRKKIT

A0A7T8JJC7 Ribosomal protein L23

3.2e-38

91.86

Show/hide

Query:  IFTDKSIRLLGKNEYTSNVGSGSTRTEIKHWVELFFGVKVIAVNSHRLSGKGRRMGPIMGHTMYYRRMIITLQPGYSIPPLRKKIT
        +FTDKSIRLLGKN+YTSNV SGSTRTE+KHWVELFFGVKVIAVNSHRL GKGRRMGPIMGHTM+YRRMIITLQPGYSIPPLRKK T
Subjt:  IFTDKSIRLLGKNEYTSNVGSGSTRTEIKHWVELFFGVKVIAVNSHRLSGKGRRMGPIMGHTMYYRRMIITLQPGYSIPPLRKKIT

SwissProt top hits

e value

%identity

Alignment

Q06R67 50S ribosomal protein L23, chloroplastic

3.3e-40

90.7

Show/hide

Query:  IFTDKSIRLLGKNEYTSNVGSGSTRTEIKHWVELFFGVKVIAVNSHRLSGKGRRMGPIMGHTMYYRRMIITLQPGYSIPPLRKKIT
        +FT+KSIRLLGKN+YTSNV SGSTRTEIKHWVELFFGVKVIA+NSHRL GKGRRMGPIMGHTM+YRRMIITLQPGYSIPPLRKK T
Subjt:  IFTDKSIRLLGKNEYTSNVGSGSTRTEIKHWVELFFGVKVIAVNSHRLSGKGRRMGPIMGHTMYYRRMIITLQPGYSIPPLRKKIT

Q09FP7 50S ribosomal protein L23, chloroplastic

4.3e-40

90.7

Show/hide

Query:  IFTDKSIRLLGKNEYTSNVGSGSTRTEIKHWVELFFGVKVIAVNSHRLSGKGRRMGPIMGHTMYYRRMIITLQPGYSIPPLRKKIT
        +FTDKSIRLLG N+YTSNV SGSTRTEIKHWVELFFGVKVIA+NSHRL GKGRRMGPIMGHTM+YRRMIITLQPGYSIPPLRKK T
Subjt:  IFTDKSIRLLGKNEYTSNVGSGSTRTEIKHWVELFFGVKVIAVNSHRLSGKGRRMGPIMGHTMYYRRMIITLQPGYSIPPLRKKIT

Q0PUX7 50S ribosomal protein L23, chloroplastic

4.3e-40

90.7

Show/hide

Query:  IFTDKSIRLLGKNEYTSNVGSGSTRTEIKHWVELFFGVKVIAVNSHRLSGKGRRMGPIMGHTMYYRRMIITLQPGYSIPPLRKKIT
        +FTDKSIRLLGKN+YTSNV SGSTRTEIKHWVELFFGVKVIA+NSHRL GKGRRMGP MGHTM+YRRMIITLQPGYSIPPLRKK T
Subjt:  IFTDKSIRLLGKNEYTSNVGSGSTRTEIKHWVELFFGVKVIAVNSHRLSGKGRRMGPIMGHTMYYRRMIITLQPGYSIPPLRKKIT

Q0ZIV5 50S ribosomal protein L23, chloroplastic

1.1e-40

91.86

Show/hide

Query:  IFTDKSIRLLGKNEYTSNVGSGSTRTEIKHWVELFFGVKVIAVNSHRLSGKGRRMGPIMGHTMYYRRMIITLQPGYSIPPLRKKIT
        +FTDKSIRLLGKN+YTSNV SGSTRTEIKHWVELFFGVKVIA+NSHRL GKGRRMGPIMGHTM+YRRMIITLQPGYSIPPLRKK T
Subjt:  IFTDKSIRLLGKNEYTSNVGSGSTRTEIKHWVELFFGVKVIAVNSHRLSGKGRRMGPIMGHTMYYRRMIITLQPGYSIPPLRKKIT

Q4VZK6 50S ribosomal protein L23, chloroplastic

1.1e-40

91.86

Show/hide

Query:  IFTDKSIRLLGKNEYTSNVGSGSTRTEIKHWVELFFGVKVIAVNSHRLSGKGRRMGPIMGHTMYYRRMIITLQPGYSIPPLRKKIT
        +FTDKSIRLLGKN+YTSNV SGSTRTEIKHWVELFFGVKVIA+NSHRL GKGRRMGPIMGHTM+YRRMIITLQPGYSIPPLRKK T
Subjt:  IFTDKSIRLLGKNEYTSNVGSGSTRTEIKHWVELFFGVKVIAVNSHRLSGKGRRMGPIMGHTMYYRRMIITLQPGYSIPPLRKKIT

Arabidopsis top hits

e value

%identity

Alignment

ATCG00840.1 ribosomal protein L23.1

2.2e-39

87.21

Show/hide

Query:  IFTDKSIRLLGKNEYTSNVGSGSTRTEIKHWVELFFGVKVIAVNSHRLSGKGRRMGPIMGHTMYYRRMIITLQPGYSIPPLRKKIT
        +FTDKSIRLLGKN+YT NV SGSTRTEIKHWVELFFGVKVIA+NSHRL GK +RMGPI+GHTM+YRRMIITLQPGYSIPPLRKK T
Subjt:  IFTDKSIRLLGKNEYTSNVGSGSTRTEIKHWVELFFGVKVIAVNSHRLSGKGRRMGPIMGHTMYYRRMIITLQPGYSIPPLRKKIT

ATCG01300.1 ribosomal protein L23

2.2e-39

87.21

Show/hide

Query:  IFTDKSIRLLGKNEYTSNVGSGSTRTEIKHWVELFFGVKVIAVNSHRLSGKGRRMGPIMGHTMYYRRMIITLQPGYSIPPLRKKIT
        +FTDKSIRLLGKN+YT NV SGSTRTEIKHWVELFFGVKVIA+NSHRL GK +RMGPI+GHTM+YRRMIITLQPGYSIPPLRKK T
Subjt:  IFTDKSIRLLGKNEYTSNVGSGSTRTEIKHWVELFFGVKVIAVNSHRLSGKGRRMGPIMGHTMYYRRMIITLQPGYSIPPLRKKIT

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAACATATTTACAGACAAAAGTATTCGGTTATTGGGCAAAAATGAATATACTTCTAATGTCGGATCAGGATCAACTAGGACAGAAATAAAGCATTGGGTCGAACTCTT
CTTTGGTGTCAAGGTAATAGCTGTGAATAGTCATCGACTCTCGGGAAAGGGTAGAAGAATGGGACCTATTATGGGACATACAATGTATTACAGACGTATGATCATTACGC
TTCAACCGGGTTATTCTATTCCACCTCTTAGAAAGAAAATAACTTAA

mRNA sequence

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Protein sequence

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MNIFTDKSIRLLGKNEYTSNVGSGSTRTEIKHWVELFFGVKVIAVNSHRLSGKGRRMGPIMGHTMYYRRMIITLQPGYSIPPLRKKIT

Lsi05G008010 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome