CuGenDBv2

Gene ID	Lsi05G008020
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Protein Ycf2
Genome location	chr05:11868681..11869427
RNA-Seq Expression	Lsi05G008020
Synteny	Lsi05G008020
Gene Ontology terms	GO:0009570 - chloroplast stroma (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0005524 - ATP binding (molecular function) GO:0016887 - ATPase activity (molecular function)
InterPro domains	IPR008543 - Uncharacterised protein family Ycf2

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

YP_009468904.1 hypothetical chloroplast RF2 [Gynostemma compressum]

1.5e-129

92.77

Show/hide

Query:  HQFKSWIFELREFKNSHYFLDSWTQFNLVGSFIHIFFHQECFIKLLDSQIWSILLSRNSPGSTSNRYFTIKGVVLFVVAVLIYRINNRKMVERKNLYLTG
        HQFKSWIFELRE KNSHYFLDSWTQFN VGSFIHIFFHQE FIKLLDS+IWSILLSRNS GSTSNRYFTIKGVVLFVVAVLIYRINNRKMVERKNLYLTG
Subjt:  HQFKSWIFELREFKNSHYFLDSWTQFNLVGSFIHIFFHQECFIKLLDSQIWSILLSRNSPGSTSNRYFTIKGVVLFVVAVLIYRINNRKMVERKNLYLTG

Query:  FLPIPMNFIGSRNDTLEESFGSSNINRLI-----FPKGKKISESCFLDPKESTWILPITKKCIMPESNWGSRWWRNWMGKKRDSNCKISNETVARIEISF
        FLPIPMNFIG RNDTLEESFGSSNINRLI      PKGKKISESCFLDPKESTW+LPITKKCIMPESNWGSRWWRNW+GKKRDS+CKISNETVA IEISF
Subjt:  FLPIPMNFIGSRNDTLEESFGSSNINRLI-----FPKGKKISESCFLDPKESTWILPITKKCIMPESNWGSRWWRNWMGKKRDSNCKISNETVARIEISF

Query:  KEKDIKYMEFLFVYYMDDQIRKDHDWELFDRLSSRKRRNIINLNSGQLF
        KEKDIKY+EFLFVYYMDDQIRKDHDWELFDRLS RKRRNIINLNSGQLF
Subjt:  KEKDIKYMEFLFVYYMDDQIRKDHDWELFDRLSSRKRRNIINLNSGQLF

YP_009751528.1 Ycf2 protein [Thladiantha dubia]

1.5e-129

92.77

Show/hide

Query:  HQFKSWIFELREFKNSHYFLDSWTQFNLVGSFIHIFFHQECFIKLLDSQIWSILLSRNSPGSTSNRYFTIKGVVLFVVAVLIYRINNRKMVERKNLYLTG
        HQFKSWIFELRE KNSHYFLDSWTQFN VGSFIHIFFHQE FIKLLDS+IWSILLSRNS GSTSNRYFTIKGVVLFVVAVLIYRINNRKMVERKNLYLTG
Subjt:  HQFKSWIFELREFKNSHYFLDSWTQFNLVGSFIHIFFHQECFIKLLDSQIWSILLSRNSPGSTSNRYFTIKGVVLFVVAVLIYRINNRKMVERKNLYLTG

Query:  FLPIPMNFIGSRNDTLEESFGSSNINRLI-----FPKGKKISESCFLDPKESTWILPITKKCIMPESNWGSRWWRNWMGKKRDSNCKISNETVARIEISF
        FLPIPMNFIG RNDTLEESFGSSNINRLI      PKGKKISESCFLDPKESTW+LPITKKCIMPESNWGSRWWRNW+GKKRDS+CKISNETVA IEISF
Subjt:  FLPIPMNFIGSRNDTLEESFGSSNINRLI-----FPKGKKISESCFLDPKESTWILPITKKCIMPESNWGSRWWRNWMGKKRDSNCKISNETVARIEISF

Query:  KEKDIKYMEFLFVYYMDDQIRKDHDWELFDRLSSRKRRNIINLNSGQLF
        KEKDIKY+EFLFVYYMDDQIRKDHDWELFDRLS RKRRNIINLNSGQLF
Subjt:  KEKDIKYMEFLFVYYMDDQIRKDHDWELFDRLSSRKRRNIINLNSGQLF

YP_009752286.1 Ycf2 protein [Trichosanthes baviensis]

1.5e-129

92.77

Show/hide

Query:  HQFKSWIFELREFKNSHYFLDSWTQFNLVGSFIHIFFHQECFIKLLDSQIWSILLSRNSPGSTSNRYFTIKGVVLFVVAVLIYRINNRKMVERKNLYLTG
        HQFKSWIFELRE KNSHYFLDSWTQFN VGSFIHIFFHQE FIKLLDS+IWSILLSRNS GSTSNRYFTIKGVVLFVVAVLIYRINNRKMVERKNLYLTG
Subjt:  HQFKSWIFELREFKNSHYFLDSWTQFNLVGSFIHIFFHQECFIKLLDSQIWSILLSRNSPGSTSNRYFTIKGVVLFVVAVLIYRINNRKMVERKNLYLTG

Query:  FLPIPMNFIGSRNDTLEESFGSSNINRLI-----FPKGKKISESCFLDPKESTWILPITKKCIMPESNWGSRWWRNWMGKKRDSNCKISNETVARIEISF
        FLPIPMNFIG RNDTLEESFGSSNINRLI      PKGKKISESCFLDPKESTW+LPITKKCIMPESNWGSRWWRNW+GKKRDS+CKISNETVA IEISF
Subjt:  FLPIPMNFIGSRNDTLEESFGSSNINRLI-----FPKGKKISESCFLDPKESTWILPITKKCIMPESNWGSRWWRNWMGKKRDSNCKISNETVARIEISF

Query:  KEKDIKYMEFLFVYYMDDQIRKDHDWELFDRLSSRKRRNIINLNSGQLF
        KEKDIKY+EFLFVYYMDDQIRKDHDWELFDRLS RKRRNIINLNSGQLF
Subjt:  KEKDIKYMEFLFVYYMDDQIRKDHDWELFDRLSSRKRRNIINLNSGQLF

YP_009752370.1 Ycf2 protein [Bryonia marmorata]

1.5e-129

92.77

Show/hide

Query:  HQFKSWIFELREFKNSHYFLDSWTQFNLVGSFIHIFFHQECFIKLLDSQIWSILLSRNSPGSTSNRYFTIKGVVLFVVAVLIYRINNRKMVERKNLYLTG
        HQFKSWIFELRE KNSHYFLDSWTQFN VGSFIHIFFHQE FIKLLDS+IWSILLSRNS GSTSNRYFTIKGVVLFVVAVLIYRINNRKMVERKNLYLTG
Subjt:  HQFKSWIFELREFKNSHYFLDSWTQFNLVGSFIHIFFHQECFIKLLDSQIWSILLSRNSPGSTSNRYFTIKGVVLFVVAVLIYRINNRKMVERKNLYLTG

Query:  FLPIPMNFIGSRNDTLEESFGSSNINRLI-----FPKGKKISESCFLDPKESTWILPITKKCIMPESNWGSRWWRNWMGKKRDSNCKISNETVARIEISF
        FLPIPMNFIG RNDTLEESFGSSNINRLI      PKGKKISESCFLDPKESTW+LPITKKCIMPESNWGSRWWRNW+GKKRDS+CKISNETVA IEISF
Subjt:  FLPIPMNFIGSRNDTLEESFGSSNINRLI-----FPKGKKISESCFLDPKESTWILPITKKCIMPESNWGSRWWRNWMGKKRDSNCKISNETVARIEISF

Query:  KEKDIKYMEFLFVYYMDDQIRKDHDWELFDRLSSRKRRNIINLNSGQLF
        KEKDIKY+EFLFVYYMDDQIRKDHDWELFDRLS RKRRNIINLNSGQLF
Subjt:  KEKDIKYMEFLFVYYMDDQIRKDHDWELFDRLSSRKRRNIINLNSGQLF

YP_010131137.1 hypothetical protein RF2 [Benincasa hispida]

1.5e-129

92.77

Show/hide

Query:  HQFKSWIFELREFKNSHYFLDSWTQFNLVGSFIHIFFHQECFIKLLDSQIWSILLSRNSPGSTSNRYFTIKGVVLFVVAVLIYRINNRKMVERKNLYLTG
        HQFKSWIFELRE KNSHYFLDSWTQFN VGSFIHIFFHQE FIKLLDS+IWSILLSRNS GSTSNRYFTIKGVVLFVVAVLIYRINNRKMVERKNLYLTG
Subjt:  HQFKSWIFELREFKNSHYFLDSWTQFNLVGSFIHIFFHQECFIKLLDSQIWSILLSRNSPGSTSNRYFTIKGVVLFVVAVLIYRINNRKMVERKNLYLTG

Query:  FLPIPMNFIGSRNDTLEESFGSSNINRLI-----FPKGKKISESCFLDPKESTWILPITKKCIMPESNWGSRWWRNWMGKKRDSNCKISNETVARIEISF
        FLPIPMNFIG RNDTLEESFGSSNINRLI      PKGKKISESCFLDPKESTW+LPITKKCIMPESNWGSRWWRNW+GKKRDS+CKISNETVA IEISF
Subjt:  FLPIPMNFIGSRNDTLEESFGSSNINRLI-----FPKGKKISESCFLDPKESTWILPITKKCIMPESNWGSRWWRNWMGKKRDSNCKISNETVARIEISF

Query:  KEKDIKYMEFLFVYYMDDQIRKDHDWELFDRLSSRKRRNIINLNSGQLF
        KEKDIKY+EFLFVYYMDDQIRKDHDWELFDRLS RKRRNIINLNSGQLF
Subjt:  KEKDIKYMEFLFVYYMDDQIRKDHDWELFDRLSSRKRRNIINLNSGQLF

TrEMBL top hits

e value

%identity

Alignment

A0A410HFC5 Protein Ycf2

7.5e-130

92.77

Show/hide

Query:  HQFKSWIFELREFKNSHYFLDSWTQFNLVGSFIHIFFHQECFIKLLDSQIWSILLSRNSPGSTSNRYFTIKGVVLFVVAVLIYRINNRKMVERKNLYLTG
        HQFKSWIFELRE KNSHYFLDSWTQFN VGSFIHIFFHQE FIKLLDS+IWSILLSRNS GSTSNRYFTIKGVVLFVVAVLIYRINNRKMVERKNLYLTG
Subjt:  HQFKSWIFELREFKNSHYFLDSWTQFNLVGSFIHIFFHQECFIKLLDSQIWSILLSRNSPGSTSNRYFTIKGVVLFVVAVLIYRINNRKMVERKNLYLTG

Query:  FLPIPMNFIGSRNDTLEESFGSSNINRLI-----FPKGKKISESCFLDPKESTWILPITKKCIMPESNWGSRWWRNWMGKKRDSNCKISNETVARIEISF
        FLPIPMNFIG RNDTLEESFGSSNINRLI      PKGKKISESCFLDPKESTW+LPITKKCIMPESNWGSRWWRNW+GKKRDS+CKISNETVA IEISF
Subjt:  FLPIPMNFIGSRNDTLEESFGSSNINRLI-----FPKGKKISESCFLDPKESTWILPITKKCIMPESNWGSRWWRNWMGKKRDSNCKISNETVARIEISF

Query:  KEKDIKYMEFLFVYYMDDQIRKDHDWELFDRLSSRKRRNIINLNSGQLF
        KEKDIKY+EFLFVYYMDDQIRKDHDWELFDRLS RKRRNIINLNSGQLF
Subjt:  KEKDIKYMEFLFVYYMDDQIRKDHDWELFDRLSSRKRRNIINLNSGQLF

A0A6H0ESM3 Protein Ycf2

7.5e-130

92.77

Show/hide

Query:  HQFKSWIFELREFKNSHYFLDSWTQFNLVGSFIHIFFHQECFIKLLDSQIWSILLSRNSPGSTSNRYFTIKGVVLFVVAVLIYRINNRKMVERKNLYLTG
        HQFKSWIFELRE KNSHYFLDSWTQFN VGSFIHIFFHQE FIKLLDS+IWSILLSRNS GSTSNRYFTIKGVVLFVVAVLIYRINNRKMVERKNLYLTG
Subjt:  HQFKSWIFELREFKNSHYFLDSWTQFNLVGSFIHIFFHQECFIKLLDSQIWSILLSRNSPGSTSNRYFTIKGVVLFVVAVLIYRINNRKMVERKNLYLTG

Query:  FLPIPMNFIGSRNDTLEESFGSSNINRLI-----FPKGKKISESCFLDPKESTWILPITKKCIMPESNWGSRWWRNWMGKKRDSNCKISNETVARIEISF
        FLPIPMNFIG RNDTLEESFGSSNINRLI      PKGKKISESCFLDPKESTW+LPITKKCIMPESNWGSRWWRNW+GKKRDS+CKISNETVA IEISF
Subjt:  FLPIPMNFIGSRNDTLEESFGSSNINRLI-----FPKGKKISESCFLDPKESTWILPITKKCIMPESNWGSRWWRNWMGKKRDSNCKISNETVARIEISF

Query:  KEKDIKYMEFLFVYYMDDQIRKDHDWELFDRLSSRKRRNIINLNSGQLF
        KEKDIKY+EFLFVYYMDDQIRKDHDWELFDRLS RKRRNIINLNSGQLF
Subjt:  KEKDIKYMEFLFVYYMDDQIRKDHDWELFDRLSSRKRRNIINLNSGQLF

A0A6H0ET42 Protein Ycf2

7.5e-130

92.77

Show/hide

Query:  HQFKSWIFELREFKNSHYFLDSWTQFNLVGSFIHIFFHQECFIKLLDSQIWSILLSRNSPGSTSNRYFTIKGVVLFVVAVLIYRINNRKMVERKNLYLTG
        HQFKSWIFELRE KNSHYFLDSWTQFN VGSFIHIFFHQE FIKLLDS+IWSILLSRNS GSTSNRYFTIKGVVLFVVAVLIYRINNRKMVERKNLYLTG
Subjt:  HQFKSWIFELREFKNSHYFLDSWTQFNLVGSFIHIFFHQECFIKLLDSQIWSILLSRNSPGSTSNRYFTIKGVVLFVVAVLIYRINNRKMVERKNLYLTG

Query:  FLPIPMNFIGSRNDTLEESFGSSNINRLI-----FPKGKKISESCFLDPKESTWILPITKKCIMPESNWGSRWWRNWMGKKRDSNCKISNETVARIEISF
        FLPIPMNFIG RNDTLEESFGSSNINRLI      PKGKKISESCFLDPKESTW+LPITKKCIMPESNWGSRWWRNW+GKKRDS+CKISNETVA IEISF
Subjt:  FLPIPMNFIGSRNDTLEESFGSSNINRLI-----FPKGKKISESCFLDPKESTWILPITKKCIMPESNWGSRWWRNWMGKKRDSNCKISNETVARIEISF

Query:  KEKDIKYMEFLFVYYMDDQIRKDHDWELFDRLSSRKRRNIINLNSGQLF
        KEKDIKY+EFLFVYYMDDQIRKDHDWELFDRLS RKRRNIINLNSGQLF
Subjt:  KEKDIKYMEFLFVYYMDDQIRKDHDWELFDRLSSRKRRNIINLNSGQLF

A0A6M3RUH1 Protein Ycf2

7.5e-130

92.77

Show/hide

Query:  HQFKSWIFELREFKNSHYFLDSWTQFNLVGSFIHIFFHQECFIKLLDSQIWSILLSRNSPGSTSNRYFTIKGVVLFVVAVLIYRINNRKMVERKNLYLTG
        HQFKSWIFELRE KNSHYFLDSWTQFN VGSFIHIFFHQE FIKLLDS+IWSILLSRNS GSTSNRYFTIKGVVLFVVAVLIYRINNRKMVERKNLYLTG
Subjt:  HQFKSWIFELREFKNSHYFLDSWTQFNLVGSFIHIFFHQECFIKLLDSQIWSILLSRNSPGSTSNRYFTIKGVVLFVVAVLIYRINNRKMVERKNLYLTG

Query:  FLPIPMNFIGSRNDTLEESFGSSNINRLI-----FPKGKKISESCFLDPKESTWILPITKKCIMPESNWGSRWWRNWMGKKRDSNCKISNETVARIEISF
        FLPIPMNFIG RNDTLEESFGSSNINRLI      PKGKKISESCFLDPKESTW+LPITKKCIMPESNWGSRWWRNW+GKKRDS+CKISNETVA IEISF
Subjt:  FLPIPMNFIGSRNDTLEESFGSSNINRLI-----FPKGKKISESCFLDPKESTWILPITKKCIMPESNWGSRWWRNWMGKKRDSNCKISNETVARIEISF

Query:  KEKDIKYMEFLFVYYMDDQIRKDHDWELFDRLSSRKRRNIINLNSGQLF
        KEKDIKY+EFLFVYYMDDQIRKDHDWELFDRLS RKRRNIINLNSGQLF
Subjt:  KEKDIKYMEFLFVYYMDDQIRKDHDWELFDRLSSRKRRNIINLNSGQLF

A0A7G9IT80 Protein Ycf2

7.5e-130

92.77

Show/hide

Query:  HQFKSWIFELREFKNSHYFLDSWTQFNLVGSFIHIFFHQECFIKLLDSQIWSILLSRNSPGSTSNRYFTIKGVVLFVVAVLIYRINNRKMVERKNLYLTG
        HQFKSWIFELRE KNSHYFLDSWTQFN VGSFIHIFFHQE FIKLLDS+IWSILLSRNS GSTSNRYFTIKGVVLFVVAVLIYRINNRKMVERKNLYLTG
Subjt:  HQFKSWIFELREFKNSHYFLDSWTQFNLVGSFIHIFFHQECFIKLLDSQIWSILLSRNSPGSTSNRYFTIKGVVLFVVAVLIYRINNRKMVERKNLYLTG

Query:  FLPIPMNFIGSRNDTLEESFGSSNINRLI-----FPKGKKISESCFLDPKESTWILPITKKCIMPESNWGSRWWRNWMGKKRDSNCKISNETVARIEISF
        FLPIPMNFIG RNDTLEESFGSSNINRLI      PKGKKISESCFLDPKESTW+LPITKKCIMPESNWGSRWWRNW+GKKRDS+CKISNETVA IEISF
Subjt:  FLPIPMNFIGSRNDTLEESFGSSNINRLI-----FPKGKKISESCFLDPKESTWILPITKKCIMPESNWGSRWWRNWMGKKRDSNCKISNETVARIEISF

Query:  KEKDIKYMEFLFVYYMDDQIRKDHDWELFDRLSSRKRRNIINLNSGQLF
        KEKDIKY+EFLFVYYMDDQIRKDHDWELFDRLS RKRRNIINLNSGQLF
Subjt:  KEKDIKYMEFLFVYYMDDQIRKDHDWELFDRLSSRKRRNIINLNSGQLF

SwissProt top hits

e value

%identity

Alignment

A4GYV4 Protein Ycf2

2.6e-124

88.14

Show/hide

Query:  HQFKSWIFE----LREFKNSHYFLDSWTQFNLVGSFIHIFFHQECFIKLLDSQIWSILLSRNSPGSTSNRYFTIKGVVLFVVAVLIYRINNRKMVERKNL
        HQFKSWIFE    LRE KNSHYFLDSWTQFN VGSFIHIFFHQE FIKLLDS+IWSIL SRNS GSTSNRYFTIKGVVLFVV VLIYRINNRKMVERKNL
Subjt:  HQFKSWIFE----LREFKNSHYFLDSWTQFNLVGSFIHIFFHQECFIKLLDSQIWSILLSRNSPGSTSNRYFTIKGVVLFVVAVLIYRINNRKMVERKNL

Query:  YLTGFLPIPMNFIGSRNDTLEESFGSSNINRLI-----FPKGKKISESCFLDPKESTWILPITKKCIMPESNWGSRWWRNWMGKKRDSNCKISNETVARI
        YLTG LPIPMN IG RNDTLEESFGSSNINRLI      PKGKKISES FLDPKESTW+LPITKKCIM ESNWGSRWWRNW+GKKRDS+CKISNETVA I
Subjt:  YLTGFLPIPMNFIGSRNDTLEESFGSSNINRLI-----FPKGKKISESCFLDPKESTWILPITKKCIMPESNWGSRWWRNWMGKKRDSNCKISNETVARI

Query:  EISFKEKDIKYMEFLFVYYMDDQIRKDHDWELFDRLSSRKRRNIINLNSGQLF
        EISFKEKDIKY+EFLFVYYMDD IRKDHDWELFDRLS RK RNIINLNSGQLF
Subjt:  EISFKEKDIKYMEFLFVYYMDDQIRKDHDWELFDRLSSRKRRNIINLNSGQLF

Q09WV7 Protein Ycf2

1.2e-124

87.84

Show/hide

Query:  HQFKSWIFE----LREFKNSHYFLDSWTQFNLVGSFIHIFFHQECFIKLLDSQIWSILLSRNS--PGSTSNRYFTIKGVVLFVVAVLIYRINNRKMVERK
        HQFKSWIFE    LRE KNSHYFLDSWTQ N V SFIHIFFHQE FIKLLDS+IWSILLSRNS   GSTSNRY TIKGVVLFVV+VLIYRINNRKMVERK
Subjt:  HQFKSWIFE----LREFKNSHYFLDSWTQFNLVGSFIHIFFHQECFIKLLDSQIWSILLSRNS--PGSTSNRYFTIKGVVLFVVAVLIYRINNRKMVERK

Query:  NLYLTGFLPIPMNFIGSRNDTLEESFGSSNINRLI-----FPKGKKISESCFLDPKESTWILPITKKCIMPESNWGSRWWRNWMGKKRDSNCKISNETVA
        NLYLTG LPIPMNFIG RNDTLEESFGSSNINRLI      PKGKKISESCFLDPKESTW+LPITKKCIMPESNWGSRWWRNW+GKKRDS+CKISNETV 
Subjt:  NLYLTGFLPIPMNFIGSRNDTLEESFGSSNINRLI-----FPKGKKISESCFLDPKESTWILPITKKCIMPESNWGSRWWRNWMGKKRDSNCKISNETVA

Query:  RIEISFKEKDIKYMEFLFVYYMDDQIRKDHDWELFDRLSSRKRRNIINLNSGQLF
         IEISFKEKDIKY+EFLFVYYMDD IRKDHDWELFDRLS RKRRNIINLNSGQLF
Subjt:  RIEISFKEKDIKYMEFLFVYYMDDQIRKDHDWELFDRLSSRKRRNIINLNSGQLF

Q0ZIV6 Protein Ycf2

1.8e-125

88.14

Show/hide

Query:  HQFKSWIFE----LREFKNSHYFLDSWTQFNLVGSFIHIFFHQECFIKLLDSQIWSILLSRNSPGSTSNRYFTIKGVVLFVVAVLIYRINNRKMVERKNL
        HQFKSWIFE    LRE KNSHYFLDSWTQF  VGSFIHIFFHQE FIKL D +IWSILLSRNS GSTSNRYFTIKGVVLFVVAVLIYRINNR MVERKNL
Subjt:  HQFKSWIFE----LREFKNSHYFLDSWTQFNLVGSFIHIFFHQECFIKLLDSQIWSILLSRNSPGSTSNRYFTIKGVVLFVVAVLIYRINNRKMVERKNL

Query:  YLTGFLPIPMNFIGSRNDTLEESFGSSNINRLI-----FPKGKKISESCFLDPKESTWILPITKKCIMPESNWGSRWWRNWMGKKRDSNCKISNETVARI
        YLTG LPIPMN IG RNDTLEESFGSSNINRLI      PKGKKISESCFLDPKESTW+LPITKKCIMPESNWGSRWWRNW+GKKRDS+CKISNETVA I
Subjt:  YLTGFLPIPMNFIGSRNDTLEESFGSSNINRLI-----FPKGKKISESCFLDPKESTWILPITKKCIMPESNWGSRWWRNWMGKKRDSNCKISNETVARI

Query:  EISFKEKDIKYMEFLFVYYMDDQIRKDHDWELFDRLSSRKRRNIINLNSGQLF
        EISFKEKDIKY+EFLFVYYMDD I KDHDWELFDRLS RKRRNIINLNSGQLF
Subjt:  EISFKEKDIKYMEFLFVYYMDDQIRKDHDWELFDRLSSRKRRNIINLNSGQLF

Q14F97 Protein Ycf2

2.6e-124

88.14

Show/hide

Query:  HQFKSWIFE----LREFKNSHYFLDSWTQFNLVGSFIHIFFHQECFIKLLDSQIWSILLSRNSPGSTSNRYFTIKGVVLFVVAVLIYRINNRKMVERKNL
        HQFKSWIFE    LRE KNSHYFLDSWTQFN VGSFIHIFFHQE FIKLLDS+IWSIL SRNS GSTSNRYFTIKGVVLFVV VLIYRINNRKMVERKNL
Subjt:  HQFKSWIFE----LREFKNSHYFLDSWTQFNLVGSFIHIFFHQECFIKLLDSQIWSILLSRNSPGSTSNRYFTIKGVVLFVVAVLIYRINNRKMVERKNL

Query:  YLTGFLPIPMNFIGSRNDTLEESFGSSNINRLI-----FPKGKKISESCFLDPKESTWILPITKKCIMPESNWGSRWWRNWMGKKRDSNCKISNETVARI
        YLTG LPIPMN IG RNDTLEESFGSSNINRLI      PKGKKISES FLDPKESTW+LPITKKCIM ESNWGSRWWRNW+GKKRDS+CKISNETVA I
Subjt:  YLTGFLPIPMNFIGSRNDTLEESFGSSNINRLI-----FPKGKKISESCFLDPKESTWILPITKKCIMPESNWGSRWWRNWMGKKRDSNCKISNETVARI

Query:  EISFKEKDIKYMEFLFVYYMDDQIRKDHDWELFDRLSSRKRRNIINLNSGQLF
        EISFKEKDIKY+EFLFVYYMDD IRKDHDWELFDRLS RK RNIINLNSGQLF
Subjt:  EISFKEKDIKYMEFLFVYYMDDQIRKDHDWELFDRLSSRKRRNIINLNSGQLF

Q2L949 Protein Ycf2

5.3e-125

88.54

Show/hide

Query:  HQFKSWIFE----LREFKNSHYFLDSWTQFNLVGSFIHIFFHQECFIKLLDSQIWSILLSRNSPGSTSNRYFTIKGVVLFVVAVLIYRINNRKMVERKNL
        HQFKSWIFE    LRE KNSHYFLDSWTQFN VGSFIHIFFHQE FIKLLD +IWSILLSRNS GSTSNRYFTIKGVVLFVVAVLIYRINNR MVERKNL
Subjt:  HQFKSWIFE----LREFKNSHYFLDSWTQFNLVGSFIHIFFHQECFIKLLDSQIWSILLSRNSPGSTSNRYFTIKGVVLFVVAVLIYRINNRKMVERKNL

Query:  YLTGFLPIPMNFIGSRNDTLEESFGSSNINRLI-----FPKGKKISESCFLDPKESTWILPITKKCIMPESNWGSRWWRNWMGKKRDSNCKISNETVARI
        YLTG LPIPMN IG RNDTLEESFGSSNINRLI      PKGKKISESCFLDPKESTW+LPITKKCIMPESN GSRWWRNW+GKKRDS+CKISNETVA I
Subjt:  YLTGFLPIPMNFIGSRNDTLEESFGSSNINRLI-----FPKGKKISESCFLDPKESTWILPITKKCIMPESNWGSRWWRNWMGKKRDSNCKISNETVARI

Query:  EISFKEKDIKYMEFLFVYYMDDQIRKDHDWELFDRLSSRKRRNIINLNSGQLF
        EISFKEKDIKY+EFLFVYYMDD IRKDHDWELFDRLS  KRRNIINLNSGQLF
Subjt:  EISFKEKDIKYMEFLFVYYMDDQIRKDHDWELFDRLSSRKRRNIINLNSGQLF

Arabidopsis top hits

e value

%identity

Alignment

ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core

2.3e-115

81.82

Show/hide

Query:  HQFKSWIFEL----REFKNSHYFLDSWTQFNLVGSFIHIFFHQECFIKLLDSQIWSILLSRNSPGSTSNRYFTIKGVVLFVVAVLIYRINNRKMVERKNL
        HQFKSWIFEL    RE KN+HYFLDSWTQFN VGSFIHIFFHQE F KLLD +I+SILL RNS GSTSNRYFTIKGVVLFVVA L+YRINNR MVE KNL
Subjt:  HQFKSWIFEL----REFKNSHYFLDSWTQFNLVGSFIHIFFHQECFIKLLDSQIWSILLSRNSPGSTSNRYFTIKGVVLFVVAVLIYRINNRKMVERKNL

Query:  YLTGFLPIPMNFIGSRNDTLEESFGSSNINRLI-----FPKGKKISESCFLDPKESTWILPITKKCIMPESNWGSRWWRNWMGKKRDSNCKISNETVARI
        YL G LPIPMN IG RNDT EESFGS NINRLI       KGKKISESCF DPKESTW+LPIT+KCIMPESNW SRWWRNW+GKKR   CKISNETVA I
Subjt:  YLTGFLPIPMNFIGSRNDTLEESFGSSNINRLI-----FPKGKKISESCFLDPKESTWILPITKKCIMPESNWGSRWWRNWMGKKRDSNCKISNETVARI

Query:  EISFKEKDIKYMEFLFVYYMDDQIRKDHDWELFDRLSSRKRRNIINLNSGQLF
        +ISFKEKDIKY+EFLFVYYMDD IRK HDWELFDRLS  KRRNIINLNSGQLF
Subjt:  EISFKEKDIKYMEFLFVYYMDDQIRKDHDWELFDRLSSRKRRNIINLNSGQLF

ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core

2.3e-115

81.82

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Query:  HQFKSWIFEL----REFKNSHYFLDSWTQFNLVGSFIHIFFHQECFIKLLDSQIWSILLSRNSPGSTSNRYFTIKGVVLFVVAVLIYRINNRKMVERKNL
        HQFKSWIFEL    RE KN+HYFLDSWTQFN VGSFIHIFFHQE F KLLD +I+SILL RNS GSTSNRYFTIKGVVLFVVA L+YRINNR MVE KNL
Subjt:  HQFKSWIFEL----REFKNSHYFLDSWTQFNLVGSFIHIFFHQECFIKLLDSQIWSILLSRNSPGSTSNRYFTIKGVVLFVVAVLIYRINNRKMVERKNL

Query:  YLTGFLPIPMNFIGSRNDTLEESFGSSNINRLI-----FPKGKKISESCFLDPKESTWILPITKKCIMPESNWGSRWWRNWMGKKRDSNCKISNETVARI
        YL G LPIPMN IG RNDT EESFGS NINRLI       KGKKISESCF DPKESTW+LPIT+KCIMPESNW SRWWRNW+GKKR   CKISNETVA I
Subjt:  YLTGFLPIPMNFIGSRNDTLEESFGSSNINRLI-----FPKGKKISESCFLDPKESTWILPITKKCIMPESNWGSRWWRNWMGKKRDSNCKISNETVARI

Query:  EISFKEKDIKYMEFLFVYYMDDQIRKDHDWELFDRLSSRKRRNIINLNSGQLF
        +ISFKEKDIKY+EFLFVYYMDD IRK HDWELFDRLS  KRRNIINLNSGQLF
Subjt:  EISFKEKDIKYMEFLFVYYMDDQIRKDHDWELFDRLSSRKRRNIINLNSGQLF

Sequences

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CDS sequence

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CATCAATTCAAATCCTGGATTTTCGAATTGAGAGAGTTCAAGAATTCTCACTATTTCTTAGATTCATGGACCCAATTCAATTTAGTGGGATCTTTCATTCACATTTTTTT
CCATCAAGAATGTTTTATAAAACTCTTAGACTCCCAAATTTGGAGTATCCTACTTTCACGCAATTCACCGGGTTCAACAAGCAATCGATATTTCACGATCAAGGGTGTAG
TACTATTTGTAGTAGCGGTCCTTATATATCGTATTAACAATCGAAAAATGGTCGAAAGAAAAAATCTGTATTTGACAGGGTTTCTTCCTATACCTATGAATTTCATTGGA
TCCAGAAATGATACATTGGAAGAATCTTTTGGCTCTTCCAATATCAATAGGTTGATTTTTCCAAAAGGAAAAAAGATCTCTGAGAGCTGTTTCCTGGATCCGAAAGAGAG
TACTTGGATTCTCCCAATAACTAAAAAGTGTATCATGCCTGAATCTAACTGGGGTTCGCGGTGGTGGAGGAACTGGATGGGAAAAAAGAGGGATTCCAATTGTAAGATAT
CTAATGAAACTGTCGCTAGAATTGAGATCTCATTCAAAGAGAAAGATATCAAATATATGGAGTTTCTTTTTGTATATTATATGGATGATCAGATCCGCAAGGACCATGAT
TGGGAATTGTTTGATCGTCTTTCTTCGAGGAAGAGGCGAAACATAATCAACTTGAATTCGGGACAACTATTC

mRNA sequence

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Protein sequence

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HQFKSWIFELREFKNSHYFLDSWTQFNLVGSFIHIFFHQECFIKLLDSQIWSILLSRNSPGSTSNRYFTIKGVVLFVVAVLIYRINNRKMVERKNLYLTGFLPIPMNFIG
SRNDTLEESFGSSNINRLIFPKGKKISESCFLDPKESTWILPITKKCIMPESNWGSRWWRNWMGKKRDSNCKISNETVARIEISFKEKDIKYMEFLFVYYMDDQIRKDHD
WELFDRLSSRKRRNIINLNSGQLF

Lsi05G008020 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome