CuGenDBv2

Gene ID	Lsi05G008050
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	cytochrome c oxidase subunit 6a, mitochondrial-like
Genome location	chr05:11955298..11956996
RNA-Seq Expression	Lsi05G008050
Synteny	Lsi05G008050
Gene Ontology terms	GO:0006123 - mitochondrial electron transport, cytochrome c to oxygen (biological process) GO:0050790 - regulation of catalytic activity (biological process) GO:1902600 - proton transmembrane transport (biological process) GO:0005751 - mitochondrial respiratory chain complex IV (cellular component) GO:0004129 - cytochrome-c oxidase activity (molecular function) GO:0030234 - enzyme regulator activity (molecular function)
InterPro domains	IPR001349 - Cytochrome c oxidase, subunit VIa IPR036418 - Cytochrome c oxidase, subunit VIa superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7015416.1 Cytochrome c oxidase subunit 6a, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.1e-41

91.49

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Query:  MAMASIRSNLLRAAVRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIATCSTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWGKFPLHY
        MAMA+IRSNLLRAA RGASRNSAQPKRGFASSAHDDARETAKWEKITYAGI +CS LAFYNLSKGHPH+EEPPAYPYLHIRNKEFPWGK P HY
Subjt:  MAMASIRSNLLRAAVRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIATCSTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWGKFPLHY

XP_008450167.1 PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Cucumis melo]

1.1e-39

94.32

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Query:  MAMASIRSNLLRAAVRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIATCSTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWG
        MAMASIRSN LRAA+RGASRNS QPKRGFASSAHDDARETAKWEKITYAGI TCS LAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWG
Subjt:  MAMASIRSNLLRAAVRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIATCSTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWG

XP_011650608.1 cytochrome c oxidase subunit 6a, mitochondrial isoform X2 [Cucumis sativus]

6.7e-40

94.32

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Query:  MAMASIRSNLLRAAVRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIATCSTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWG
        MAMASIRSNLLRAA+RGASRNS QPKRGFASSAHDDARETAKWEKITYAGI TCS LAFYNLSKGHPHHEEPPAYPY+HIRNKEFPWG
Subjt:  MAMASIRSNLLRAAVRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIATCSTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWG

XP_023001309.1 cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita maxima]

6.7e-40

94.32

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Query:  MAMASIRSNLLRAAVRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIATCSTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWG
        MAMA+IRSNLLRAA+RGASRNSAQPKRGFASSAHDDA ETAKWEKITYAGIA C+TLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWG
Subjt:  MAMASIRSNLLRAAVRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIATCSTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWG

XP_038905594.1 cytochrome c oxidase subunit 6a, mitochondrial [Benincasa hispida]

4.6e-41

97.73

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Query:  MAMASIRSNLLRAAVRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIATCSTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWG
        MAMASIRSNLLRAAVRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIATC+ LAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWG
Subjt:  MAMASIRSNLLRAAVRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIATCSTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L3I0 Uncharacterized protein

2.7e-39

94.19

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Query:  MASIRSNLLRAAVRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIATCSTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWG
        MASIRSNLLRAA+RGASRNS QPKRGFASSAHDDARETAKWEKITYAGI TCS LAFYNLSKGHPHHEEPPAYPY+HIRNKEFPWG
Subjt:  MASIRSNLLRAAVRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIATCSTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWG

A0A1S3BPM0 cytochrome c oxidase subunit 6a, mitochondrial

5.5e-40

94.32

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Query:  MAMASIRSNLLRAAVRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIATCSTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWG
        MAMASIRSN LRAA+RGASRNS QPKRGFASSAHDDARETAKWEKITYAGI TCS LAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWG
Subjt:  MAMASIRSNLLRAAVRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIATCSTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWG

A0A6J1ERW3 cytochrome c oxidase subunit 6a, mitochondrial-like

3.6e-39

93.18

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Query:  MAMASIRSNLLRAAVRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIATCSTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWG
        MAMA+IRSNLLRAA RGASRNSAQPKRGFASSAHDDARETAKWEKITYAGI +CS LAFYNLSKGHPH+EEPPAYPYLHIRNKEFPWG
Subjt:  MAMASIRSNLLRAAVRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIATCSTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWG

A0A6J1FPI8 cytochrome c oxidase subunit 6a, mitochondrial-like

9.4e-40

94.32

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Query:  MAMASIRSNLLRAAVRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIATCSTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWG
        MAMA+IRSNLLRAA RGASRNSAQPKRGFASSAHDDA ETAKWEKITYAGIA C+TLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWG
Subjt:  MAMASIRSNLLRAAVRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIATCSTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWG

A0A6J1KMD3 cytochrome c oxidase subunit 6a, mitochondrial-like

3.2e-40

94.32

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Query:  MAMASIRSNLLRAAVRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIATCSTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWG
        MAMA+IRSNLLRAA+RGASRNSAQPKRGFASSAHDDA ETAKWEKITYAGIA C+TLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWG
Subjt:  MAMASIRSNLLRAAVRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIATCSTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWG

SwissProt top hits

e value

%identity

Alignment

Q9T070 Cytochrome c oxidase subunit 6a, mitochondrial

2.0e-26

67.42

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Query:  MAMASIRSNLLRAAVRGASRNSAQPKRGFASSA-HDDARETAKWEKITYAGIATCSTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWG
        MA A +RS L RA  R A + S  PKR F+SSA HDDA E AKWEKITY GIA+C+ LA Y LSKGH H E+PPAYP++HIRNKEFPWG
Subjt:  MAMASIRSNLLRAAVRGASRNSAQPKRGFASSA-HDDARETAKWEKITYAGIATCSTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWG

Arabidopsis top hits

e value

%identity

Alignment

AT4G37830.1 cytochrome c oxidase-related

1.4e-27

67.42

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Query:  MAMASIRSNLLRAAVRGASRNSAQPKRGFASSA-HDDARETAKWEKITYAGIATCSTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWG
        MA A +RS L RA  R A + S  PKR F+SSA HDDA E AKWEKITY GIA+C+ LA Y LSKGH H E+PPAYP++HIRNKEFPWG
Subjt:  MAMASIRSNLLRAAVRGASRNSAQPKRGFASSA-HDDARETAKWEKITYAGIATCSTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWG

AT4G37830.2 cytochrome c oxidase-related

1.8e-19

58.43

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Query:  MAMASIRSNLLRAAVRGASRNSAQPKRGFASSA-HDDARETAKWEKITYAGIATCSTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWG
        MA A +RS L RA  R A + S  PKR F+SSA HDDA E AKWEKITY GIA+C+ LA Y LSKGH H E+PP          EFPWG
Subjt:  MAMASIRSNLLRAAVRGASRNSAQPKRGFASSA-HDDARETAKWEKITYAGIATCSTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWG

Sequences

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CDS sequence

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ATGGCAATGGCGTCGATCCGATCCAATCTTCTTCGCGCCGCCGTCCGCGGTGCCTCTCGGAACTCCGCTCAGCCTAAGCGTGGCTTTGCTTCCTCTGCTCACGACGATGC
TCGTGAAACGGCAAAGTGGGAGAAGATTACTTATGCAGGCATTGCAACCTGCTCTACTTTAGCATTCTATAATCTATCAAAGGGCCACCCCCACCATGAAGAGCCCCCTG
CATATCCATATTTGCACATACGCAATAAAGAGTTCCCATGGGGTAAGTTTCCACTTCATTACAAGTTCTATGACATCTTTTATATCTCTTTGCAATTGCTATTTGGGTTT
TGA

mRNA sequence

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CCGAGCCACACGCTTGGGATTATTTTGGTGAAAGAGCCACAATCTAAATTGCAAGGGTTTGATCATTTCAATCGACTCGTCAATTTGTGAGAGAGAGAACTGAAGAGAAA
ATGGCAATGGCGTCGATCCGATCCAATCTTCTTCGCGCCGCCGTCCGCGGTGCCTCTCGGAACTCCGCTCAGCCTAAGCGTGGCTTTGCTTCCTCTGCTCACGACGATGC
TCGTGAAACGGCAAAGTGGGAGAAGATTACTTATGCAGGCATTGCAACCTGCTCTACTTTAGCATTCTATAATCTATCAAAGGGCCACCCCCACCATGAAGAGCCCCCTG
CATATCCATATTTGCACATACGCAATAAAGAGTTCCCATGGGGTAAGTTTCCACTTCATTACAAGTTCTATGACATCTTTTATATCTCTTTGCAATTGCTATTTGGGTTT
TGA

Protein sequence

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MAMASIRSNLLRAAVRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIATCSTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWGKFPLHYKFYDIFYISLQLLFGF

Lsi05G008050 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome