CuGenDBv2

Gene ID	Lsi05G008130
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages;
Genome location	chr05:12554025..12554366
RNA-Seq Expression	Lsi05G008130
Synteny	Lsi05G008130
Gene Ontology terms	GO:0016020 - membrane (cellular component)
InterPro domains	IPR014848 - Reduced growth phenotype protein 1

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008455604.1 PREDICTED: uncharacterized protein LOC103495739 isoform X1 [Cucumis melo]

1.3e-43

95.83

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Query:  MFGSRFSIFGTGAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVAQLDCSLLIERLSFEIIGLQKLDAQWFSTQKPIPGSKQRRG
        MFGS+FSIFGTG AADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSV QLDCSLLIERL FEIIGLQKLDAQWFSTQKPIPGSKQRRG
Subjt:  MFGSRFSIFGTGAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVAQLDCSLLIERLSFEIIGLQKLDAQWFSTQKPIPGSKQRRG

XP_008455605.1 PREDICTED: uncharacterized protein LOC103495739 isoform X2 [Cucumis melo]

1.3e-43

95.83

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Query:  MFGSRFSIFGTGAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVAQLDCSLLIERLSFEIIGLQKLDAQWFSTQKPIPGSKQRRG
        MFGS+FSIFGTG AADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSV QLDCSLLIERL FEIIGLQKLDAQWFSTQKPIPGSKQRRG
Subjt:  MFGSRFSIFGTGAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVAQLDCSLLIERLSFEIIGLQKLDAQWFSTQKPIPGSKQRRG

XP_008455607.1 PREDICTED: uncharacterized protein LOC103495739 isoform X4 [Cucumis melo]

1.3e-43

95.83

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Query:  MFGSRFSIFGTGAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVAQLDCSLLIERLSFEIIGLQKLDAQWFSTQKPIPGSKQRRG
        MFGS+FSIFGTG AADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSV QLDCSLLIERL FEIIGLQKLDAQWFSTQKPIPGSKQRRG
Subjt:  MFGSRFSIFGTGAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVAQLDCSLLIERLSFEIIGLQKLDAQWFSTQKPIPGSKQRRG

XP_038904898.1 uncharacterized protein LOC120091119 isoform X1 [Benincasa hispida]

2.3e-43

95.83

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Query:  MFGSRFSIFGTGAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVAQLDCSLLIERLSFEIIGLQKLDAQWFSTQKPIPGSKQRRG
        MFGSRFSIFGTGA+ADKVE SAKSE FPGLKLRSDKDVYRPGDPVVVTIEICSSVAQ DCSLLIERLSFEIIGLQKLDAQWFSTQKPIPGSKQRRG
Subjt:  MFGSRFSIFGTGAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVAQLDCSLLIERLSFEIIGLQKLDAQWFSTQKPIPGSKQRRG

XP_038904899.1 uncharacterized protein LOC120091119 isoform X2 [Benincasa hispida]

2.3e-43

95.83

Show/hide

Query:  MFGSRFSIFGTGAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVAQLDCSLLIERLSFEIIGLQKLDAQWFSTQKPIPGSKQRRG
        MFGSRFSIFGTGA+ADKVE SAKSE FPGLKLRSDKDVYRPGDPVVVTIEICSSVAQ DCSLLIERLSFEIIGLQKLDAQWFSTQKPIPGSKQRRG
Subjt:  MFGSRFSIFGTGAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVAQLDCSLLIERLSFEIIGLQKLDAQWFSTQKPIPGSKQRRG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KVN2 Uncharacterized protein

9.3e-43

95.88

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Query:  MFGSRFSIFGTG-AAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVAQLDCSLLIERLSFEIIGLQKLDAQWFSTQKPIPGSKQRRG
        MFGSRFSIFGTG AAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSV QLDCSLLIERL FEIIGL KLDAQWFSTQKPIPGSKQRRG
Subjt:  MFGSRFSIFGTG-AAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVAQLDCSLLIERLSFEIIGLQKLDAQWFSTQKPIPGSKQRRG

A0A1S3C1F5 uncharacterized protein LOC103495739 isoform X2

6.5e-44

95.83

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Query:  MFGSRFSIFGTGAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVAQLDCSLLIERLSFEIIGLQKLDAQWFSTQKPIPGSKQRRG
        MFGS+FSIFGTG AADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSV QLDCSLLIERL FEIIGLQKLDAQWFSTQKPIPGSKQRRG
Subjt:  MFGSRFSIFGTGAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVAQLDCSLLIERLSFEIIGLQKLDAQWFSTQKPIPGSKQRRG

A0A1S3C208 uncharacterized protein LOC103495739 isoform X4

6.5e-44

95.83

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Query:  MFGSRFSIFGTGAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVAQLDCSLLIERLSFEIIGLQKLDAQWFSTQKPIPGSKQRRG
        MFGS+FSIFGTG AADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSV QLDCSLLIERL FEIIGLQKLDAQWFSTQKPIPGSKQRRG
Subjt:  MFGSRFSIFGTGAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVAQLDCSLLIERLSFEIIGLQKLDAQWFSTQKPIPGSKQRRG

A0A1S4E0M0 uncharacterized protein LOC103495739 isoform X1

6.5e-44

95.83

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Query:  MFGSRFSIFGTGAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVAQLDCSLLIERLSFEIIGLQKLDAQWFSTQKPIPGSKQRRG
        MFGS+FSIFGTG AADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSV QLDCSLLIERL FEIIGLQKLDAQWFSTQKPIPGSKQRRG
Subjt:  MFGSRFSIFGTGAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVAQLDCSLLIERLSFEIIGLQKLDAQWFSTQKPIPGSKQRRG

A0A6J1L132 uncharacterized protein LOC111499409 isoform X1

5.7e-40

88.54

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Query:  MFGSRFSIFGTGAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVAQLDCSLLIERLSFEIIGLQKLDAQWFSTQKPIPGSKQRRG
        MFGSRFSIFG GAAA+KVE+S KSE  PG +LRSDKDVYRPGDPVVVTIEICSSVAQLDCSLLIERL FEIIGL+KLDAQWFSTQKPIPGS+QRRG
Subjt:  MFGSRFSIFGTGAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVAQLDCSLLIERLSFEIIGLQKLDAQWFSTQKPIPGSKQRRG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G50120.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rgp1 (InterPro:IPR014848), Immunoglobulin E-set (InterPro:IPR014756); Has 144 Blast hits to 140 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 86; Fungi - 10; Plants - 39; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).

2.6e-21

52.38

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Query:  MFGSRFSIFGTGAAA---DKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVAQL-DCSLLIERLSFEIIGLQKLDAQWFSTQKPIPGSKQRRG
        M  SRFS  G G+++   D V  S  S+  P L +++DKDVYRPGD + VTIE+ +S     + S+L+E+LSFE+ GL+KLD QWFSTQKP PGSK RRG
Subjt:  MFGSRFSIFGTGAAA---DKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVAQL-DCSLLIERLSFEIIGLQKLDAQWFSTQKPIPGSKQRRG

Query:  SKSLL
            L
Subjt:  SKSLL

Sequences

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CDS sequence

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ATGTTTGGATCTAGGTTTTCCATTTTCGGAACCGGTGCTGCTGCTGATAAGGTCGAGAAGTCGGCAAAGAGCGAGTTTTTTCCTGGCCTGAAACTTCGTTCTGATAAAGA
TGTGTATCGGCCTGGCGATCCGGTTGTTGTTACTATTGAAATTTGCTCCTCTGTCGCTCAATTGGACTGCTCTCTTTTGATCGAACGACTTAGTTTTGAGATTATTGGGC
TCCAGAAGTTGGACGCTCAGTGGTTTAGCACTCAGAAGCCAATCCCTGGATCCAAACAACGGAGAGGTTCCAAGTCCCTTCTATATGATATTGTTCTCAACCGTTGCCTT
CTCCTTGTGTAA

mRNA sequence

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Protein sequence

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MFGSRFSIFGTGAAADKVEKSAKSEFFPGLKLRSDKDVYRPGDPVVVTIEICSSVAQLDCSLLIERLSFEIIGLQKLDAQWFSTQKPIPGSKQRRGSKSLLYDIVLNRCL
LLV

Lsi05G008130 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome