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Lsi05G008220 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G008220
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr05:13013152..13018357
RNA-Seq ExpressionLsi05G008220
SyntenyLsi05G008220
Gene Ontology termsNA
InterPro domainsIPR025724 - GAG-pre-integrase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7559229.1 Ribonuclease H-like superfamily [Arabidopsis thaliana x Arabidopsis arenosa]9.5e-0432Show/hide
Query:  DLEEFDGDSVAMGNKQSCEIKASDPLDFTWMMELKRANLSYKSEDGNLESVISFEANIISKEVNKSTQLWHQRLAHISQKGLNSLFQQGPNWEAQIYKVD
        DL+E DG  V MGN    E+K                 L  ++ DG++ +V++ EA +   EVN  T  WH RL H+S K +N L ++G     +++ +D
Subjt:  DLEEFDGDSVAMGNKQSCEIKASDPLDFTWMMELKRANLSYKSEDGNLESVISFEANIISKEVNKSTQLWHQRLAHISQKGLNSLFQQGPNWEAQIYKVD
RVW21953.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]4.3e-0435.16Show/hide
Query:  FLDLEEFDGDSVAMGNKQSCEIKASDPLDFTWMMELKRANLSYKSEDGNLESVISFEANIISKEVNKSTQLWHQRLAHISQKGLNSLFQQG
        F D +E DG  V +GN + C+I  +  +  + MM LK            L   ++ + + + KE   +T+LWHQRL HIS +GL  L +QG
Subjt:  FLDLEEFDGDSVAMGNKQSCEIKASDPLDFTWMMELKRANLSYKSEDGNLESVISFEANIISKEVNKSTQLWHQRLAHISQKGLNSLFQQG
RVW63580.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]1.9e-0431.01Show/hide
Query:  ARDCGGKILKRSRLPF-FPIQFSTFLDLEEFDGDSVAMGNKQSCEIKASDPL-------------DFTWMMELKRANLSYKSEDGNLESV-ISFEANIIS
        + D GG+ L  S   F   +  + F + ++ +G  V +GN +SC++     +             D  +  ELKR  LS     G L+S+  S +   ++
Subjt:  ARDCGGKILKRSRLPF-FPIQFSTFLDLEEFDGDSVAMGNKQSCEIKASDPL-------------DFTWMMELKRANLSYKSEDGNLESV-ISFEANIIS

Query:  KEVNKSTQLWHQRLAHISQKGLNSLFQQG
        KE N+  +LWH RL H+S++GLN L +QG
Subjt:  KEVNKSTQLWHQRLAHISQKGLNSLFQQG
TrEMBL top hitse value%identityAlignment
A0A438CFF3 Retrovirus-related Pol polyprotein from transposon TNT 1-942.1e-0435.16Show/hide
Query:  FLDLEEFDGDSVAMGNKQSCEIKASDPLDFTWMMELKRANLSYKSEDGNLESVISFEANIISKEVNKSTQLWHQRLAHISQKGLNSLFQQG
        F D +E DG  V +GN + C+I  +  +  + MM LK            L   ++ + + + KE   +T+LWHQRL HIS +GL  L +QG
Subjt:  FLDLEEFDGDSVAMGNKQSCEIKASDPLDFTWMMELKRANLSYKSEDGNLESVISFEANIISKEVNKSTQLWHQRLAHISQKGLNSLFQQG
A0A438FUE4 Retrovirus-related Pol polyprotein from transposon TNT 1-949.3e-0531.01Show/hide
Query:  ARDCGGKILKRSRLPF-FPIQFSTFLDLEEFDGDSVAMGNKQSCEIKASDPL-------------DFTWMMELKRANLSYKSEDGNLESV-ISFEANIIS
        + D GG+ L  S   F   +  + F + ++ +G  V +GN +SC++     +             D  +  ELKR  LS     G L+S+  S +   ++
Subjt:  ARDCGGKILKRSRLPF-FPIQFSTFLDLEEFDGDSVAMGNKQSCEIKASDPL-------------DFTWMMELKRANLSYKSEDGNLESV-ISFEANIIS

Query:  KEVNKSTQLWHQRLAHISQKGLNSLFQQG
        KE N+  +LWH RL H+S++GLN L +QG
Subjt:  KEVNKSTQLWHQRLAHISQKGLNSLFQQG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGAGGGACTGCTATTGAGATGCCTGCGAGGGACTGCGGCGGCAAGATATTGAAAAGAAGCAGACTGCCTTTCTTTCCAATTCAATTTTCAACTTTTCTAGATCTTGA
AGAGTTTGATGGTGATTCAGTGGCTATGGGCAACAAACAGAGCTGTGAAATTAAAGCATCAGATCCATTAGATTTCACTTGGATGATGGAGCTCAAAAGAGCCAATTTAA
GCTACAAGTCTGAAGATGGAAATCTGGAAAGTGTTATATCATTTGAAGCAAATATCATCTCTAAGGAGGTTAATAAATCTACTCAACTCTGGCACCAACGACTTGCTCAC
ATCAGTCAGAAGGGCCTAAACTCATTGTTCCAACAAGGCCCTAATTGGGAAGCACAAATCTACAAAGTTGACATTTTGTGA
mRNA sequenceShow/hide mRNA sequence
CGTCGTACAAAACCCACACCCGAATGGAACCCACAGTATGCAGAATGGAACCTAAGAGGAACCACGACACCCCACGACACCCTTACCCGGATGGAACTCAAGAGGCAGAC
GGACCGATCTTTGGCCGCTCCAACCATAGGCAAGGCTAAGCGAGAGGGACGCGTGGAGGGGCGCGTCGGGGTGAACAATCAGCGAGAGGGCATCGTCAGGATGAACGGTA
GGCGAGAGGAATGAGTGAACGGCCAGCTGAGGCGCGAACGACCGGTTGAAGCGCGACAGACTGCGATTGAGGATGCGAGGGACTGCTATTGAGATGCCTGCGAGGGACTG
CGGCGGCAAGATATTGAAAAGAAGCAGACTGCCTTTCTTTCCAATTCAATTTTCAACTTTTCTAGATCTTGAAGAGTTTGATGGTGATTCAGTGGCTATGGGCAACAAAC
AGAGCTGTGAAATTAAAGCATCAGATCCATTAGATTTCACTTGGATGATGGAGCTCAAAAGAGCCAATTTAAGCTACAAGTCTGAAGATGGAAATCTGGAAAGTGTTATA
TCATTTGAAGCAAATATCATCTCTAAGGAGGTTAATAAATCTACTCAACTCTGGCACCAACGACTTGCTCACATCAGTCAGAAGGGCCTAAACTCATTGTTCCAACAAGG
CCCTAATTGGGAAGCACAAATCTACAAAGTTGACATTTTGTGATCAATGCGTTTTGGGCAAGGCAACTCGACATCCCTTCAACAAAAGCCAAATGAAATCACAGGAGCAT
TGGGAGCATCCCAAAGCTAATTTATGGGGCCAAAACGAATCAATTTTGGATATTATTTGAGCAATGGAACTTCAAAGAGGTGAAAAAACCAAAATGCTCCCGTGCAAGAC
ATCTCAATGCTTTGTTTGTTGCTCCCAACAGTACCGCGACGCTTGCTCTCTGTATTGCAACATTGTCAAGCATCGATTCGTAGCTTGCAATATTTCTTGATCTCGGTTTA
AAGTATTGTGACGCTGCCTAGAAGTGATGATACACTTCCTCCTCAACTTTTTGGGCTTCTTCTTCCTATCTTTTCATGCCTTAGCCTCGATTTGCACTCCTAATGCTCTA
TTTTTGTGCACCTTAATTGCTTCAAAACTCTCAATTCTCATTTCATAGCTCAGTCCCTGTACGGACGCTAATAAATGACATGAAAGCATACAAATTAAAGCATAAAACTA
ACTCAAATACAAATTAAAGCATACACTTATTGAGTGGTATCAATAGAACCTACCACCCTGTCTTTTA
Protein sequenceShow/hide protein sequence
MRGTAIEMPARDCGGKILKRSRLPFFPIQFSTFLDLEEFDGDSVAMGNKQSCEIKASDPLDFTWMMELKRANLSYKSEDGNLESVISFEANIISKEVNKSTQLWHQRLAH
ISQKGLNSLFQQGPNWEAQIYKVDIL