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Lsi05G008280 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G008280
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description60S acidic ribosomal protein P1-like
Genome locationchr05:13315951..13317555
RNA-Seq ExpressionLsi05G008280
SyntenyLsi05G008280
Gene Ontology termsGO:0002181 - cytoplasmic translation (biological process)
GO:0006414 - translational elongation (biological process)
GO:0032147 - activation of protein kinase activity (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0030295 - protein kinase activator activity (molecular function)
GO:0043021 - ribonucleoprotein complex binding (molecular function)
InterPro domainsIPR027534 - Ribosomal protein L12/P1/P2 family
IPR038716 - Ribosomal protein P1/P2, N-terminal domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045366.1 60S acidic ribosomal protein P1-like isoform X1 [Cucumis melo var. makuwa]5.2e-4593.52Show/hide
Query:  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVSAPAVSAAAAPAVEEKKEEPKEESDD
        MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPV+V+AP  SAA A A+EEKKEEPKEESDD
Subjt:  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVSAPAVSAAAAPAVEEKKEEPKEESDD

Query:  DMGFSLFD
        DMGFSLFD
Subjt:  DMGFSLFD

XP_004138012.2 60S acidic ribosomal protein P1 [Cucumis sativus]4.0e-4593.52Show/hide
Query:  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVSAPAVSAAAAPAVEEKKEEPKEESDD
        MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAA V+V+AP  SAAAAPA+EEK+EEPKEESDD
Subjt:  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVSAPAVSAAAAPAVEEKKEEPKEESDD

Query:  DMGFSLFD
        DMGFSLFD
Subjt:  DMGFSLFD

XP_008455614.1 PREDICTED: 60S acidic ribosomal protein P1-like isoform X1 [Cucumis melo]1.8e-4594.44Show/hide
Query:  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVSAPAVSAAAAPAVEEKKEEPKEESDD
        MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPV+V+AP  SAAAA A+EEKKEEPKEESDD
Subjt:  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVSAPAVSAAAAPAVEEKKEEPKEESDD

Query:  DMGFSLFD
        DMGFSLFD
Subjt:  DMGFSLFD

XP_038905168.1 60S acidic ribosomal protein P1-like [Benincasa hispida]1.9e-4798.15Show/hide
Query:  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVSAPAVSAAAAPAVEEKKEEPKEESDD
        MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPV+V+APAVSAAAAPAVEEKKEEPKEESDD
Subjt:  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVSAPAVSAAAAPAVEEKKEEPKEESDD

Query:  DMGFSLFD
        DMGFSLFD
Subjt:  DMGFSLFD

XP_038905286.1 60S acidic ribosomal protein P1-like [Benincasa hispida]3.6e-4696.3Show/hide
Query:  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVSAPAVSAAAAPAVEEKKEEPKEESDD
        MSTSELACAYAALALHDDGIAITAEKIAAV+AAAGL VESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPV+V+APAVSAAAAPAVEEKKEEPKEESDD
Subjt:  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVSAPAVSAAAAPAVEEKKEEPKEESDD

Query:  DMGFSLFD
        DMGFSLFD
Subjt:  DMGFSLFD

TrEMBL top hitse value%identityAlignment
A0A0A0LTV1 Uncharacterized protein1.9e-4593.52Show/hide
Query:  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVSAPAVSAAAAPAVEEKKEEPKEESDD
        MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAA V+V+AP  SAAAAPA+EEK+EEPKEESDD
Subjt:  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVSAPAVSAAAAPAVEEKKEEPKEESDD

Query:  DMGFSLFD
        DMGFSLFD
Subjt:  DMGFSLFD

A0A1S3C0X1 60S acidic ribosomal protein P1-like isoform X18.6e-4694.44Show/hide
Query:  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVSAPAVSAAAAPAVEEKKEEPKEESDD
        MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPV+V+AP  SAAAA A+EEKKEEPKEESDD
Subjt:  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVSAPAVSAAAAPAVEEKKEEPKEESDD

Query:  DMGFSLFD
        DMGFSLFD
Subjt:  DMGFSLFD

A0A5A7TTB2 60S acidic ribosomal protein P1-like isoform X12.5e-4593.52Show/hide
Query:  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVSAPAVSAAAAPAVEEKKEEPKEESDD
        MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPV+V+AP  SAA A A+EEKKEEPKEESDD
Subjt:  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVSAPAVSAAAAPAVEEKKEEPKEESDD

Query:  DMGFSLFD
        DMGFSLFD
Subjt:  DMGFSLFD

A0A6J1CGB2 60S acidic ribosomal protein P1-like2.1e-4491.89Show/hide
Query:  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVSAP---AVSAAAAPAVEEKKEEPKEE
        MSTSELACAYAA+AL+DDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSV+AP   A ++AAAPAVEEKKEEPKEE
Subjt:  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVSAP---AVSAAAAPAVEEKKEEPKEE

Query:  SDDDMGFSLFD
        SDDDMGFSLFD
Subjt:  SDDDMGFSLFD

A0A6J1G2H4 60S acidic ribosomal protein P1-like1.4e-4391.82Show/hide
Query:  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVSAPA--VSAAAAPAVEEKKEEPKEES
        MSTSELACAYAALALHDDGIAITA+KIAAVVAAAGLCVESYWPSLFAKLAEKR+IGDLLLNVGCGGGAAA VSV+APA   ++AAAPAVEEKKEEPKEES
Subjt:  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVSAPA--VSAAAAPAVEEKKEEPKEES

Query:  DDDMGFSLFD
        DDDMGFSLFD
Subjt:  DDDMGFSLFD

SwissProt top hitse value%identityAlignment
O23095 60S acidic ribosomal protein P1-28.4e-3065.49Show/hide
Query:  MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLLNVGC-GGGAAAPVSVSAPAV---SAAAAPAVEEKKEEPK
        MST  ELAC+YA + L D+GIAIT++KIA +V AAG+ +ESYWP LFAK+AEKRN+ DL++NVG  GGG  APVS +APA    +AAAAPA EEKK+EP 
Subjt:  MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLLNVGC-GGGAAAPVSVSAPAV---SAAAAPAVEEKKEEPK

Query:  EESDDDMGFSLFD
        EESD D+GF LFD
Subjt:  EESDDDMGFSLFD

P29763 60S acidic ribosomal protein P11.4e-2461.61Show/hide
Query:  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLLNVGCGGG----AAAPVSVSAPAVSAAAAPAVEEKKEEPKE
        MSTSELAC YAAL LHDDG+ ITA+ I  +  AAG+ VE YWP+LFAKL  K+++ DL+ NVG GGG    AAAP +  APA  A AAP  EEKKE  +E
Subjt:  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLLNVGCGGG----AAAPVSVSAPAVSAAAAPAVEEKKEEPKE

Query:  ESDDDMGFSLFD
        E   DMGFSLFD
Subjt:  ESDDDMGFSLFD

P52855 60S acidic ribosomal protein P15.6e-3474.55Show/hide
Query:  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVSAPA--VSAAAAPAVEEKKEEPKEES
        M++ ELAC YAAL L DDGIAITAEKIA +V AA + VESYWP+LFAKL EKRN+ DL+L+VG GGG AAPV+ +APA   +AAAAPAVEEKKEE KEES
Subjt:  MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVSAPA--VSAAAAPAVEEKKEEPKEES

Query:  DDDMGFSLFD
        DDDMGFSLFD
Subjt:  DDDMGFSLFD

Q8LCW9 60S acidic ribosomal protein P1-12.2e-3066.07Show/hide
Query:  MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVSAPAV--SAAAAPAVEE-KKEEPKE
        MST  ELAC+YA + L D+GIAITA+KIA +V AAG+ +ESYWP LFAK+AEKRN+ DL++NVG GGG  APV+ +APA    AAAAPA EE KK+EP E
Subjt:  MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVSAPAV--SAAAAPAVEE-KKEEPKE

Query:  ESDDDMGFSLFD
        ESD D+GF LFD
Subjt:  ESDDDMGFSLFD

Q8LEQ0 60S acidic ribosomal protein P1-32.2e-3065.49Show/hide
Query:  MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVSAPAV---SAAAAPAVEE-KKEEPK
        MST  ELAC+YA + L D+GIAITA+KIA +V AAG+ +ESYWP LFAK+AEKRN+ DL++NVG GGG  APV+ +APA    +AAAAPA EE KK+EP 
Subjt:  MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVSAPAV---SAAAAPAVEE-KKEEPK

Query:  EESDDDMGFSLFD
        EESD D+GF LFD
Subjt:  EESDDDMGFSLFD

Arabidopsis top hitse value%identityAlignment
AT1G01100.1 60S acidic ribosomal protein family1.6e-3166.07Show/hide
Query:  MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVSAPAV--SAAAAPAVEE-KKEEPKE
        MST  ELAC+YA + L D+GIAITA+KIA +V AAG+ +ESYWP LFAK+AEKRN+ DL++NVG GGG  APV+ +APA    AAAAPA EE KK+EP E
Subjt:  MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVSAPAV--SAAAAPAVEE-KKEEPKE

Query:  ESDDDMGFSLFD
        ESD D+GF LFD
Subjt:  ESDDDMGFSLFD

AT1G01100.2 60S acidic ribosomal protein family1.6e-3166.07Show/hide
Query:  MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVSAPAV--SAAAAPAVEE-KKEEPKE
        MST  ELAC+YA + L D+GIAITA+KIA +V AAG+ +ESYWP LFAK+AEKRN+ DL++NVG GGG  APV+ +APA    AAAAPA EE KK+EP E
Subjt:  MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVSAPAV--SAAAAPAVEE-KKEEPKE

Query:  ESDDDMGFSLFD
        ESD D+GF LFD
Subjt:  ESDDDMGFSLFD

AT1G01100.4 60S acidic ribosomal protein family1.6e-3166.07Show/hide
Query:  MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVSAPAV--SAAAAPAVEE-KKEEPKE
        MST  ELAC+YA + L D+GIAITA+KIA +V AAG+ +ESYWP LFAK+AEKRN+ DL++NVG GGG  APV+ +APA    AAAAPA EE KK+EP E
Subjt:  MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVSAPAV--SAAAAPAVEE-KKEEPKE

Query:  ESDDDMGFSLFD
        ESD D+GF LFD
Subjt:  ESDDDMGFSLFD

AT5G47700.1 60S acidic ribosomal protein family1.6e-3165.49Show/hide
Query:  MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVSAPAV---SAAAAPAVEE-KKEEPK
        MST  ELAC+YA + L D+GIAITA+KIA +V AAG+ +ESYWP LFAK+AEKRN+ DL++NVG GGG  APV+ +APA    +AAAAPA EE KK+EP 
Subjt:  MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVSAPAV---SAAAAPAVEE-KKEEPK

Query:  EESDDDMGFSLFD
        EESD D+GF LFD
Subjt:  EESDDDMGFSLFD

AT5G47700.2 60S acidic ribosomal protein family1.6e-3165.49Show/hide
Query:  MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVSAPAV---SAAAAPAVEE-KKEEPK
        MST  ELAC+YA + L D+GIAITA+KIA +V AAG+ +ESYWP LFAK+AEKRN+ DL++NVG GGG  APV+ +APA    +AAAAPA EE KK+EP 
Subjt:  MST-SELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVSAPAV---SAAAAPAVEE-KKEEPK

Query:  EESDDDMGFSLFD
        EESD D+GF LFD
Subjt:  EESDDDMGFSLFD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTACCAGTGAACTCGCTTGCGCCTACGCCGCCCTGGCTCTTCACGACGACGGAATCGCAATCACTGCGGAAAAGATTGCAGCCGTTGTAGCAGCTGCGGGGCTTTG
TGTGGAATCTTACTGGCCCAGCCTTTTTGCTAAATTGGCGGAGAAGAGGAATATTGGGGACCTTCTTCTGAATGTTGGCTGTGGAGGTGGCGCTGCGGCTCCCGTGTCTG
TTTCCGCTCCTGCCGTCAGTGCTGCTGCCGCTCCTGCCGTCGAGGAAAAGAAGGAGGAGCCAAAGGAAGAGAGCGATGACGACATGGGATTCAGCTTATTCGATTAG
mRNA sequenceShow/hide mRNA sequence
CATCGAGGGAGCATGAAAAACCCTAATCCCTCTTCTCCCAATATATAGCAAATTCAGAATCATTTCTATGGCGATCACCGTCTGCGCATTTGCCTCCAAATAGTCTCCTG
GTCCTACGCTAGCCATGTCTACCAGTGAACTCGCTTGCGCCTACGCCGCCCTGGCTCTTCACGACGACGGAATCGCAATCACTGCGGAAAAGATTGCAGCCGTTGTAGCA
GCTGCGGGGCTTTGTGTGGAATCTTACTGGCCCAGCCTTTTTGCTAAATTGGCGGAGAAGAGGAATATTGGGGACCTTCTTCTGAATGTTGGCTGTGGAGGTGGCGCTGC
GGCTCCCGTGTCTGTTTCCGCTCCTGCCGTCAGTGCTGCTGCCGCTCCTGCCGTCGAGGAAAAGAAGGAGGAGCCAAAGGAAGAGAGCGATGACGACATGGGATTCAGCT
TATTCGATTAGGAGGCTCTTTAGTTGTAGGATTGTGTTAGGAAACTATTGAGTGGGTAGGCCTAATCTTGATTTTACGCTGTTCATTTGTCTCGAGATTTGTTTTTTTTA
CTAGGGCTTTTTCAGTTTTCTTTCGCCTTCAATGTACGATGTGGTAAATGCATCTGATCACACTTTTGTTTGATTTGCTTCACGTTGCAGTGAGATTCAACTTTATGAGA
AGAAATCTTTGGTTAAACCCTGGAACCGTGTTTTCTTGCTTTTTGATTGTTAGGGTTAGTTGATAGCAAAAGGAAAGAACACACTTCGCCTACCTGCGTTGATAAGCACT
TTTTGGAATTACATTGCTTTCATTTCGTGCATTCACTCCAGTAAATTGTTTTTGAAAATGGTAGATGCAAATGTAATGACATCATGAATTTTTTTATTTTTTCTATATTT
ACCACAGACGCATCAATGGTGCATCTCTTAT
Protein sequenceShow/hide protein sequence
MSTSELACAYAALALHDDGIAITAEKIAAVVAAAGLCVESYWPSLFAKLAEKRNIGDLLLNVGCGGGAAAPVSVSAPAVSAAAAPAVEEKKEEPKEESDDDMGFSLFD