; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi05G008530 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G008530
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptioncleavage and polyadenylation specificity factor subunit 1
Genome locationchr05:14061165..14063945
RNA-Seq ExpressionLsi05G008530
SyntenyLsi05G008530
Gene Ontology termsGO:0006378 - mRNA polyadenylation (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003684 - damaged DNA binding (molecular function)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR015943 - WD40/YVTN repeat-like-containing domain superfamily
IPR018846 - Cleavage/polyadenylation specificity factor, A subunit, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022157087.1 cleavage and polyadenylation specificity factor subunit 1 [Momordica charantia]1.2e-7196.71Show/hide
Query:  NLPHDAYKLLAVPSPIGGVLVVSANSIYYHSQSASCMLALNNYAVSADSSQDMPRSNFNVELDAASATWLVNDVALLSTKTGELLLLALVYDGRVVQRLD
        NLPHDAYKLLAVPSPIGGVLVVSANSI+YHSQSASCMLALNNYAVSADSSQDMPRSNFNVELDAA+A+WL+NDVALLSTKTGELLLLALVYDGRVVQRLD
Subjt:  NLPHDAYKLLAVPSPIGGVLVVSANSIYYHSQSASCMLALNNYAVSADSSQDMPRSNFNVELDAASATWLVNDVALLSTKTGELLLLALVYDGRVVQRLD

Query:  LSKSKASVLTSGIASIGNSLFFLGSRLGDSLLVQFSCGVGSSGLASSLKDEV
        LSKSKASVLTSGIASIGNSLFFLGSRLGDSLLVQFSCGVGSSGL SSLKDEV
Subjt:  LSKSKASVLTSGIASIGNSLFFLGSRLGDSLLVQFSCGVGSSGLASSLKDEV

XP_022973595.1 cleavage and polyadenylation specificity factor subunit 1 isoform X2 [Cucurbita maxima]3.6e-7196.71Show/hide
Query:  NLPHDAYKLLAVPSPIGGVLVVSANSIYYHSQSASCMLALNNYAVSADSSQDMPRSNFNVELDAASATWLVNDVALLSTKTGELLLLALVYDGRVVQRLD
        NLPHDAYKLLAVPSPIGGVLVVSANSI+YHSQSASCMLALNNYAVS DSSQDMPRSNFNVELDAA ATWL+NDVALLSTKTGELLLLALVYDGRVVQRLD
Subjt:  NLPHDAYKLLAVPSPIGGVLVVSANSIYYHSQSASCMLALNNYAVSADSSQDMPRSNFNVELDAASATWLVNDVALLSTKTGELLLLALVYDGRVVQRLD

Query:  LSKSKASVLTSGIASIGNSLFFLGSRLGDSLLVQFSCGVGSSGLASSLKDEV
        LSKSKASVLTSGIASIG+SLFFLGSRLGDSLLVQFSCGVGSSGLASSLKDEV
Subjt:  LSKSKASVLTSGIASIGNSLFFLGSRLGDSLLVQFSCGVGSSGLASSLKDEV

XP_038887722.1 cleavage and polyadenylation specificity factor subunit 1 isoform X1 [Benincasa hispida]6.5e-7398.68Show/hide
Query:  NLPHDAYKLLAVPSPIGGVLVVSANSIYYHSQSASCMLALNNYAVSADSSQDMPRSNFNVELDAASATWLVNDVALLSTKTGELLLLALVYDGRVVQRLD
        NLPHDAYKLLAVPSPIGGVLVVSANSI+YHSQSASCMLALNNYAVSADSSQDMPRSNFNVELDAA+ATWLVNDVALLSTKTGELLLLALVYDGRVVQRLD
Subjt:  NLPHDAYKLLAVPSPIGGVLVVSANSIYYHSQSASCMLALNNYAVSADSSQDMPRSNFNVELDAASATWLVNDVALLSTKTGELLLLALVYDGRVVQRLD

Query:  LSKSKASVLTSGIASIGNSLFFLGSRLGDSLLVQFSCGVGSSGLASSLKDEV
        LSKSKASVLTSGIASIGNSLFFLGSRLGDSLLVQFSCGVGSSGLASSLKDEV
Subjt:  LSKSKASVLTSGIASIGNSLFFLGSRLGDSLLVQFSCGVGSSGLASSLKDEV

XP_038887723.1 cleavage and polyadenylation specificity factor subunit 1 isoform X2 [Benincasa hispida]6.5e-7398.68Show/hide
Query:  NLPHDAYKLLAVPSPIGGVLVVSANSIYYHSQSASCMLALNNYAVSADSSQDMPRSNFNVELDAASATWLVNDVALLSTKTGELLLLALVYDGRVVQRLD
        NLPHDAYKLLAVPSPIGGVLVVSANSI+YHSQSASCMLALNNYAVSADSSQDMPRSNFNVELDAA+ATWLVNDVALLSTKTGELLLLALVYDGRVVQRLD
Subjt:  NLPHDAYKLLAVPSPIGGVLVVSANSIYYHSQSASCMLALNNYAVSADSSQDMPRSNFNVELDAASATWLVNDVALLSTKTGELLLLALVYDGRVVQRLD

Query:  LSKSKASVLTSGIASIGNSLFFLGSRLGDSLLVQFSCGVGSSGLASSLKDEV
        LSKSKASVLTSGIASIGNSLFFLGSRLGDSLLVQFSCGVGSSGLASSLKDEV
Subjt:  LSKSKASVLTSGIASIGNSLFFLGSRLGDSLLVQFSCGVGSSGLASSLKDEV

XP_038887724.1 cleavage and polyadenylation specificity factor subunit 1 isoform X3 [Benincasa hispida]6.5e-7398.68Show/hide
Query:  NLPHDAYKLLAVPSPIGGVLVVSANSIYYHSQSASCMLALNNYAVSADSSQDMPRSNFNVELDAASATWLVNDVALLSTKTGELLLLALVYDGRVVQRLD
        NLPHDAYKLLAVPSPIGGVLVVSANSI+YHSQSASCMLALNNYAVSADSSQDMPRSNFNVELDAA+ATWLVNDVALLSTKTGELLLLALVYDGRVVQRLD
Subjt:  NLPHDAYKLLAVPSPIGGVLVVSANSIYYHSQSASCMLALNNYAVSADSSQDMPRSNFNVELDAASATWLVNDVALLSTKTGELLLLALVYDGRVVQRLD

Query:  LSKSKASVLTSGIASIGNSLFFLGSRLGDSLLVQFSCGVGSSGLASSLKDEV
        LSKSKASVLTSGIASIGNSLFFLGSRLGDSLLVQFSCGVGSSGLASSLKDEV
Subjt:  LSKSKASVLTSGIASIGNSLFFLGSRLGDSLLVQFSCGVGSSGLASSLKDEV

TrEMBL top hitse value%identityAlignment
A0A0A0LKI9 Uncharacterized protein1.7e-7196.69Show/hide
Query:  NLPHDAYKLLAVPSPIGGVLVVSANSIYYHSQSASCMLALNNYAVSADSSQDMPRSNFNVELDAASATWLVNDVALLSTKTGELLLLALVYDGRVVQRLD
        NLPHDAYKLLAVPSPIGGVLV+SANSI+Y+SQSASCMLALNNYAVSADSSQDMPRSNFNVELDAA+ATWLVNDVALLSTKTGELLLLALVYDGRVVQRLD
Subjt:  NLPHDAYKLLAVPSPIGGVLVVSANSIYYHSQSASCMLALNNYAVSADSSQDMPRSNFNVELDAASATWLVNDVALLSTKTGELLLLALVYDGRVVQRLD

Query:  LSKSKASVLTSGIASIGNSLFFLGSRLGDSLLVQFSCGVGSSGLASSLKDE
        LSKSKASVLTSGIASIGNSLFFLGSRLGDSLLVQFSCGVGSSGLAS+LKDE
Subjt:  LSKSKASVLTSGIASIGNSLFFLGSRLGDSLLVQFSCGVGSSGLASSLKDE

A0A5A7U6U4 Cleavage and polyadenylation specificity factor subunit 1 isoform X16.6e-7196.03Show/hide
Query:  NLPHDAYKLLAVPSPIGGVLVVSANSIYYHSQSASCMLALNNYAVSADSSQDMPRSNFNVELDAASATWLVNDVALLSTKTGELLLLALVYDGRVVQRLD
        NLPHDAYKLLAVPSPIGGVLV+SANSI+Y+SQSASCMLALNNYAVSADSSQDMPRSNFNVELDAA+ATWLVNDVALLSTKTGELLLLALVYDGRVVQRLD
Subjt:  NLPHDAYKLLAVPSPIGGVLVVSANSIYYHSQSASCMLALNNYAVSADSSQDMPRSNFNVELDAASATWLVNDVALLSTKTGELLLLALVYDGRVVQRLD

Query:  LSKSKASVLTSGIASIGNSLFFLGSRLGDSLLVQFSCGVGSSGLASSLKDE
        LSKSKASVL SGIASIGNSLFFLGSRLGDSLLVQFSCGVGSSGLAS+LKDE
Subjt:  LSKSKASVLTSGIASIGNSLFFLGSRLGDSLLVQFSCGVGSSGLASSLKDE

A0A6J1DTM4 cleavage and polyadenylation specificity factor subunit 16.0e-7296.71Show/hide
Query:  NLPHDAYKLLAVPSPIGGVLVVSANSIYYHSQSASCMLALNNYAVSADSSQDMPRSNFNVELDAASATWLVNDVALLSTKTGELLLLALVYDGRVVQRLD
        NLPHDAYKLLAVPSPIGGVLVVSANSI+YHSQSASCMLALNNYAVSADSSQDMPRSNFNVELDAA+A+WL+NDVALLSTKTGELLLLALVYDGRVVQRLD
Subjt:  NLPHDAYKLLAVPSPIGGVLVVSANSIYYHSQSASCMLALNNYAVSADSSQDMPRSNFNVELDAASATWLVNDVALLSTKTGELLLLALVYDGRVVQRLD

Query:  LSKSKASVLTSGIASIGNSLFFLGSRLGDSLLVQFSCGVGSSGLASSLKDEV
        LSKSKASVLTSGIASIGNSLFFLGSRLGDSLLVQFSCGVGSSGL SSLKDEV
Subjt:  LSKSKASVLTSGIASIGNSLFFLGSRLGDSLLVQFSCGVGSSGLASSLKDEV

A0A6J1I7X9 cleavage and polyadenylation specificity factor subunit 1 isoform X11.7e-7196.71Show/hide
Query:  NLPHDAYKLLAVPSPIGGVLVVSANSIYYHSQSASCMLALNNYAVSADSSQDMPRSNFNVELDAASATWLVNDVALLSTKTGELLLLALVYDGRVVQRLD
        NLPHDAYKLLAVPSPIGGVLVVSANSI+YHSQSASCMLALNNYAVS DSSQDMPRSNFNVELDAA ATWL+NDVALLSTKTGELLLLALVYDGRVVQRLD
Subjt:  NLPHDAYKLLAVPSPIGGVLVVSANSIYYHSQSASCMLALNNYAVSADSSQDMPRSNFNVELDAASATWLVNDVALLSTKTGELLLLALVYDGRVVQRLD

Query:  LSKSKASVLTSGIASIGNSLFFLGSRLGDSLLVQFSCGVGSSGLASSLKDEV
        LSKSKASVLTSGIASIG+SLFFLGSRLGDSLLVQFSCGVGSSGLASSLKDEV
Subjt:  LSKSKASVLTSGIASIGNSLFFLGSRLGDSLLVQFSCGVGSSGLASSLKDEV

A0A6J1IBS0 cleavage and polyadenylation specificity factor subunit 1 isoform X21.7e-7196.71Show/hide
Query:  NLPHDAYKLLAVPSPIGGVLVVSANSIYYHSQSASCMLALNNYAVSADSSQDMPRSNFNVELDAASATWLVNDVALLSTKTGELLLLALVYDGRVVQRLD
        NLPHDAYKLLAVPSPIGGVLVVSANSI+YHSQSASCMLALNNYAVS DSSQDMPRSNFNVELDAA ATWL+NDVALLSTKTGELLLLALVYDGRVVQRLD
Subjt:  NLPHDAYKLLAVPSPIGGVLVVSANSIYYHSQSASCMLALNNYAVSADSSQDMPRSNFNVELDAASATWLVNDVALLSTKTGELLLLALVYDGRVVQRLD

Query:  LSKSKASVLTSGIASIGNSLFFLGSRLGDSLLVQFSCGVGSSGLASSLKDEV
        LSKSKASVLTSGIASIG+SLFFLGSRLGDSLLVQFSCGVGSSGLASSLKDEV
Subjt:  LSKSKASVLTSGIASIGNSLFFLGSRLGDSLLVQFSCGVGSSGLASSLKDEV

SwissProt top hitse value%identityAlignment
A0A0R4IC37 Cleavage and polyadenylation specificity factor subunit 12.6e-1636.96Show/hide
Query:  NLPHDAYKLLAVPSPIGGVLVVSANSIYYHSQSASCM-LALNNYAVSADSSQDMPRSNFNVELDAASATWLVNDVALLSTKTGELLLLALVYDG-RVVQR
        NLP D  +++AVP PIGGV+V + NS+ Y +QS     ++LN+      +    P+    + LD + A+++ +D  ++S K GE+ +L L+ DG R V+ 
Subjt:  NLPHDAYKLLAVPSPIGGVLVVSANSIYYHSQSASCM-LALNNYAVSADSSQDMPRSNFNVELDAASATWLVNDVALLSTKTGELLLLALVYDG-RVVQR

Query:  LDLSKSKASVLTSGIASIGNSLFFLGSRLGDSLLVQFS
            K+ ASVLT+ + ++     FLGSRLG+SLL++++
Subjt:  LDLSKSKASVLTSGIASIGNSLFFLGSRLGDSLLVQFS

Q10569 Cleavage and polyadenylation specificity factor subunit 12.2e-1536.96Show/hide
Query:  NLPHDAYKLLAVPSPIGGVLVVSANSIYYHSQSASCM-LALNNYAVSADSSQDMPRSNFNVELDAASATWLVNDVALLSTKTGELLLLALVYDG-RVVQR
        +LP D  + LAVP PIGGV++ + NS+ Y +QS     +ALN+      +     +    + LD A A ++  D  ++S K GE+ +L L+ DG R V+ 
Subjt:  NLPHDAYKLLAVPSPIGGVLVVSANSIYYHSQSASCM-LALNNYAVSADSSQDMPRSNFNVELDAASATWLVNDVALLSTKTGELLLLALVYDG-RVVQR

Query:  LDLSKSKASVLTSGIASIGNSLFFLGSRLGDSLLVQFS
            K+ ASVLT+ + ++     FLGSRLG+SLL++++
Subjt:  LDLSKSKASVLTSGIASIGNSLFFLGSRLGDSLLVQFS

Q10570 Cleavage and polyadenylation specificity factor subunit 14.5e-1638.41Show/hide
Query:  NLPHDAYKLLAVPSPIGGVLVVSANSIYYHSQSASCM-LALNNYAVSADSSQDMPRSNFNVELDAASATWLVNDVALLSTKTGELLLLALVYDG-RVVQR
        +LP D  + LAVP PIGGV+V + NS+ Y +QS     +ALN+      +     +    + LD A AT++  D  ++S K GE+ +L L+ DG R V+ 
Subjt:  NLPHDAYKLLAVPSPIGGVLVVSANSIYYHSQSASCM-LALNNYAVSADSSQDMPRSNFNVELDAASATWLVNDVALLSTKTGELLLLALVYDG-RVVQR

Query:  LDLSKSKASVLTSGIASIGNSLFFLGSRLGDSLLVQFS
            K+ ASVLT+ + ++     FLGSRLG+SLL++++
Subjt:  LDLSKSKASVLTSGIASIGNSLFFLGSRLGDSLLVQFS

Q7XWP1 Probable cleavage and polyadenylation specificity factor subunit 14.0e-4972.79Show/hide
Query:  NLPHDAYKLLAVPSPIGGVLVVSANSIYYHSQSASCMLALNNYAVSADSSQDMPRSNFNVELDAASATWLVNDVALLSTKTGELLLLALVYDGRVVQRLD
        NLPHDAY+LLAVP PI GVLV+ ANSI+YHSQS SC L LNN++   D S ++ +SNF VELDAA ATWL ND+ + STK GE+LLL +VYDGRVVQRLD
Subjt:  NLPHDAYKLLAVPSPIGGVLVVSANSIYYHSQSASCMLALNNYAVSADSSQDMPRSNFNVELDAASATWLVNDVALLSTKTGELLLLALVYDGRVVQRLD

Query:  LSKSKASVLTSGIASIGNSLFFLGSRLGDSLLVQFS
        L KSKASVL+S + SIGNS FFLGSRLGDSLLVQFS
Subjt:  LSKSKASVLTSGIASIGNSLFFLGSRLGDSLLVQFS

Q9FGR0 Cleavage and polyadenylation specificity factor subunit 11.1e-5978.29Show/hide
Query:  MNLPHDAYKLLAVPSPIGGVLVVSANSIYYHSQSASCMLALNNYAVSADSSQDMPRSNFNVELDAASATWLVNDVALLSTKTGELLLLALVYDGRVVQRL
        +NLPHDAYKLLAVPSPIGGVLV+ AN+I+YHSQSASC LALNNYA SADSSQ++P SNF+VELDAA  TW+ NDVALLSTK+GELLLL L+YDGR VQRL
Subjt:  MNLPHDAYKLLAVPSPIGGVLVVSANSIYYHSQSASCMLALNNYAVSADSSQDMPRSNFNVELDAASATWLVNDVALLSTKTGELLLLALVYDGRVVQRL

Query:  DLSKSKASVLTSGIASIGNSLFFLGSRLGDSLLVQFSCGVGSSGLASSLKDE
        DLSKSKASVL S I S+GNSLFFLGSRLGDSLLVQFSC  G +     L+DE
Subjt:  DLSKSKASVLTSGIASIGNSLFFLGSRLGDSLLVQFSCGVGSSGLASSLKDE

Arabidopsis top hitse value%identityAlignment
AT4G21100.1 damaged DNA binding protein 1B1.1e-0425.17Show/hide
Query:  NLPHDAYKLLAVPSPIGGVLVVSANSIYYHSQSASCMLALNNYAVSADSSQDMPRSNFNVELDAASATWLVNDVALLSTKTGELLLLALVYDGRVVQRLD
        NL + A  L+ VPSP+ GVL++   +I Y S +A   + +      A    D+  S +                 LL    G + LL + ++   V  L 
Subjt:  NLPHDAYKLLAVPSPIGGVLVVSANSIYYHSQSASCMLALNNYAVSADSSQDMPRSNFNVELDAASATWLVNDVALLSTKTGELLLLALVYDGRVVQRLD

Query:  LSKSKASVLTSGIASIGNSLFFLGSRLGDSLLVQFSCGVGSSG
        +     + + S I+ + N++ F+GS  GDS L++ +    + G
Subjt:  LSKSKASVLTSGIASIGNSLFFLGSRLGDSLLVQFSCGVGSSG

AT5G51660.1 cleavage and polyadenylation specificity factor 1608.0e-6178.29Show/hide
Query:  MNLPHDAYKLLAVPSPIGGVLVVSANSIYYHSQSASCMLALNNYAVSADSSQDMPRSNFNVELDAASATWLVNDVALLSTKTGELLLLALVYDGRVVQRL
        +NLPHDAYKLLAVPSPIGGVLV+ AN+I+YHSQSASC LALNNYA SADSSQ++P SNF+VELDAA  TW+ NDVALLSTK+GELLLL L+YDGR VQRL
Subjt:  MNLPHDAYKLLAVPSPIGGVLVVSANSIYYHSQSASCMLALNNYAVSADSSQDMPRSNFNVELDAASATWLVNDVALLSTKTGELLLLALVYDGRVVQRL

Query:  DLSKSKASVLTSGIASIGNSLFFLGSRLGDSLLVQFSCGVGSSGLASSLKDE
        DLSKSKASVL S I S+GNSLFFLGSRLGDSLLVQFSC  G +     L+DE
Subjt:  DLSKSKASVLTSGIASIGNSLFFLGSRLGDSLLVQFSCGVGSSGLASSLKDE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACCTCCCTCATGATGCTTACAAGCTACTTGCGGTGCCATCACCAATTGGTGGTGTACTTGTCGTCAGTGCAAATAGTATTTACTATCACAGTCAGTCAGCTTCATG
CATGTTGGCTTTGAATAATTATGCTGTTTCTGCCGATAGCAGTCAAGACATGCCTAGATCAAATTTCAATGTGGAATTGGATGCTGCCAGTGCTACATGGTTGGTAAATG
ATGTGGCCTTGCTGTCAACCAAGACTGGGGAGCTATTATTGCTGGCACTTGTCTATGATGGACGGGTTGTGCAGAGACTTGATCTTTCAAAGTCTAAAGCTTCAGTACTT
ACATCGGGCATTGCATCAATTGGAAATTCATTATTTTTTCTGGGCAGTCGATTGGGAGATAGTTTACTTGTGCAGTTTAGTTGTGGAGTGGGATCTTCAGGATTGGCATC
CAGTTTAAAGGACGAGGTTTGTTGGGCTCCATAA
mRNA sequenceShow/hide mRNA sequence
ATGAACCTCCCTCATGATGCTTACAAGCTACTTGCGGTGCCATCACCAATTGGTGGTGTACTTGTCGTCAGTGCAAATAGTATTTACTATCACAGTCAGTCAGCTTCATG
CATGTTGGCTTTGAATAATTATGCTGTTTCTGCCGATAGCAGTCAAGACATGCCTAGATCAAATTTCAATGTGGAATTGGATGCTGCCAGTGCTACATGGTTGGTAAATG
ATGTGGCCTTGCTGTCAACCAAGACTGGGGAGCTATTATTGCTGGCACTTGTCTATGATGGACGGGTTGTGCAGAGACTTGATCTTTCAAAGTCTAAAGCTTCAGTACTT
ACATCGGGCATTGCATCAATTGGAAATTCATTATTTTTTCTGGGCAGTCGATTGGGAGATAGTTTACTTGTGCAGTTTAGTTGTGGAGTGGGATCTTCAGGATTGGCATC
CAGTTTAAAGGACGAGGTTTGTTGGGCTCCATAACTTTACTTTTGCTAATTACTTTGGACTTGCTTTTGTTGCTTACTTTGGACACTTCTAGTTAATGTTGTTTCCTTGT
ATTTTGGTGAGTCTTTGTTGAAGTGTTGATATGATAAATATTTTTTTTTAA
Protein sequenceShow/hide protein sequence
MNLPHDAYKLLAVPSPIGGVLVVSANSIYYHSQSASCMLALNNYAVSADSSQDMPRSNFNVELDAASATWLVNDVALLSTKTGELLLLALVYDGRVVQRLDLSKSKASVL
TSGIASIGNSLFFLGSRLGDSLLVQFSCGVGSSGLASSLKDEVCWAP