; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi05G008540 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G008540
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptioncleavage and polyadenylation specificity factor subunit 1 isoform X1
Genome locationchr05:14079483..14083138
RNA-Seq ExpressionLsi05G008540
SyntenyLsi05G008540
Gene Ontology termsGO:0006378 - mRNA polyadenylation (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003684 - damaged DNA binding (molecular function)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR015943 - WD40/YVTN repeat-like-containing domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049896.1 cleavage and polyadenylation specificity factor subunit 1 isoform X1 [Cucumis melo var. makuwa]5.6e-13897.23Show/hide
Query:  MSFAAYRMMHWPTGIENCDSGFITHSRADFVPGVTSHTDDLDSDWQPRREIGPVPNLVVTAGNVLEVYVVRVQEEGGRESRSSGEVRRGGIMDGVSGASL
        MSFAAYRMMHWPTGIENCDS FITHSRADFVP VTSH+DDLDSDW PRR+IGPVPNLVVTAGNVLEVYVVRV EEGGRESRSSGEVRRGGIMDGVSGASL
Subjt:  MSFAAYRMMHWPTGIENCDSGFITHSRADFVPGVTSHTDDLDSDWQPRREIGPVPNLVVTAGNVLEVYVVRVQEEGGRESRSSGEVRRGGIMDGVSGASL

Query:  ELVCHYRLHGNVESMAILSSRGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRTSSMHCFEGPQWLHLKRGRESFARGPVVKVDPQGRCGGVLVYGLQM
        ELVCHYRLHGNVESMAILSSRGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRTSSMHCFEGPQWLHLKRGRESFARGPVVKVDPQGRCGGVLVYGLQM
Subjt:  ELVCHYRLHGNVESMAILSSRGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRTSSMHCFEGPQWLHLKRGRESFARGPVVKVDPQGRCGGVLVYGLQM

Query:  IILKASQAGSSLVVDDEAFGNTGAISARVESSYLINLRDLDVKHVKDFVFVHG
        IILKASQAGS LVVDDEAFGNTGAISARVESSYLINLRDLDVKHVKDFVFVHG
Subjt:  IILKASQAGSSLVVDDEAFGNTGAISARVESSYLINLRDLDVKHVKDFVFVHG

XP_008441850.1 PREDICTED: cleavage and polyadenylation specificity factor subunit 1 isoform X1 [Cucumis melo]5.6e-13897.23Show/hide
Query:  MSFAAYRMMHWPTGIENCDSGFITHSRADFVPGVTSHTDDLDSDWQPRREIGPVPNLVVTAGNVLEVYVVRVQEEGGRESRSSGEVRRGGIMDGVSGASL
        MSFAAYRMMHWPTGIENCDS FITHSRADFVP VTSH+DDLDSDW PRR+IGPVPNLVVTAGNVLEVYVVRV EEGGRESRSSGEVRRGGIMDGVSGASL
Subjt:  MSFAAYRMMHWPTGIENCDSGFITHSRADFVPGVTSHTDDLDSDWQPRREIGPVPNLVVTAGNVLEVYVVRVQEEGGRESRSSGEVRRGGIMDGVSGASL

Query:  ELVCHYRLHGNVESMAILSSRGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRTSSMHCFEGPQWLHLKRGRESFARGPVVKVDPQGRCGGVLVYGLQM
        ELVCHYRLHGNVESMAILSSRGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRTSSMHCFEGPQWLHLKRGRESFARGPVVKVDPQGRCGGVLVYGLQM
Subjt:  ELVCHYRLHGNVESMAILSSRGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRTSSMHCFEGPQWLHLKRGRESFARGPVVKVDPQGRCGGVLVYGLQM

Query:  IILKASQAGSSLVVDDEAFGNTGAISARVESSYLINLRDLDVKHVKDFVFVHG
        IILKASQAGS LVVDDEAFGNTGAISARVESSYLINLRDLDVKHVKDFVFVHG
Subjt:  IILKASQAGSSLVVDDEAFGNTGAISARVESSYLINLRDLDVKHVKDFVFVHG

XP_011648998.1 cleavage and polyadenylation specificity factor subunit 1 isoform X1 [Cucumis sativus]2.3e-13695.65Show/hide
Query:  MSFAAYRMMHWPTGIENCDSGFITHSRADFVPGVTSHTDDLDSDWQPRREIGPVPNLVVTAGNVLEVYVVRVQEEGGRESRSSGEVRRGGIMDGVSGASL
        MSFAAYRMMHWPTGIENCDS +ITHSRADFVP VTSH+DDLDSDW PRR+IGPVPNLVVTAGNVLEVYVVRV EEGGRES+SSGEVRRGGIMDGVSGASL
Subjt:  MSFAAYRMMHWPTGIENCDSGFITHSRADFVPGVTSHTDDLDSDWQPRREIGPVPNLVVTAGNVLEVYVVRVQEEGGRESRSSGEVRRGGIMDGVSGASL

Query:  ELVCHYRLHGNVESMAILSSRGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRTSSMHCFEGPQWLHLKRGRESFARGPVVKVDPQGRCGGVLVYGLQM
        ELVCHYRLHGNVESMAILSSRGGDGSKKRDSIILVFQEAKISVLEFDDS HSLRTSSMHCF+GPQWLHLKRGRESFARGPVVKVDPQGRCGGVLVYGLQM
Subjt:  ELVCHYRLHGNVESMAILSSRGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRTSSMHCFEGPQWLHLKRGRESFARGPVVKVDPQGRCGGVLVYGLQM

Query:  IILKASQAGSSLVVDDEAFGNTGAISARVESSYLINLRDLDVKHVKDFVFVHG
        IILKASQAGS LVVDDEAFGNTGAISARVESSYLINLRDLDVKHVKDFVFVHG
Subjt:  IILKASQAGSSLVVDDEAFGNTGAISARVESSYLINLRDLDVKHVKDFVFVHG

XP_023520837.1 cleavage and polyadenylation specificity factor subunit 1 isoform X1 [Cucurbita pepo subsp. pepo]1.8e-13394.86Show/hide
Query:  MSFAAYRMMHWPTGIENCDSGFITHSRADFVPGVTSHTDDLDSDWQPRREIGPVPNLVVTAGNVLEVYVVRVQEEGGRESRSSGEVRRGGIMDGVSGASL
        MSFAAYRMMH PTGIENCDSGFITHSRADFVP VTSH DDL+SDW PRREIGPVPNLVVTAGNVLEVYVVRVQE+GG+ESRSSGEVRRGGIMDGVSGASL
Subjt:  MSFAAYRMMHWPTGIENCDSGFITHSRADFVPGVTSHTDDLDSDWQPRREIGPVPNLVVTAGNVLEVYVVRVQEEGGRESRSSGEVRRGGIMDGVSGASL

Query:  ELVCHYRLHGNVESMAILSSRGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRTSSMHCFEGPQWLHLKRGRESFARGPVVKVDPQGRCGGVLVYGLQM
        ELVCHYRLHGNVESM ILSSRGGDGSKKRDSIILVF+EAKISVLEFDDSIHSLRTSSMHCFEGPQWLHLKRGRESFARGPVVKVDPQGRCGGVLVYGLQM
Subjt:  ELVCHYRLHGNVESMAILSSRGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRTSSMHCFEGPQWLHLKRGRESFARGPVVKVDPQGRCGGVLVYGLQM

Query:  IILKASQAGSSLVVDDEAFGNTGAISARVESSYLINLRDLDVKHVKDFVFVHG
        IILKASQAGS LVVDDEA GN GA SARVESSYLINLRDLDVKHVKDFVFVHG
Subjt:  IILKASQAGSSLVVDDEAFGNTGAISARVESSYLINLRDLDVKHVKDFVFVHG

XP_038887722.1 cleavage and polyadenylation specificity factor subunit 1 isoform X1 [Benincasa hispida]1.1e-13897.63Show/hide
Query:  MSFAAYRMMHWPTGIENCDSGFITHSRADFVPGVTSHTDDLDSDWQPRREIGPVPNLVVTAGNVLEVYVVRVQEEGGRESRSSGEVRRGGIMDGVSGASL
        MSFAAYRMMHWPTGIENCDSGFITHS ADFVPGV SH DDLDSDWQPRREIGPVPNLVVTAGNVLEVYVVRVQEEGGRES+SSGEVRRGGIMDGVSGASL
Subjt:  MSFAAYRMMHWPTGIENCDSGFITHSRADFVPGVTSHTDDLDSDWQPRREIGPVPNLVVTAGNVLEVYVVRVQEEGGRESRSSGEVRRGGIMDGVSGASL

Query:  ELVCHYRLHGNVESMAILSSRGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRTSSMHCFEGPQWLHLKRGRESFARGPVVKVDPQGRCGGVLVYGLQM
        ELVCHYRLHGNVESMAILSSRGGDGSKKRDSIILVFQEAKISVLEFDDS HSLRTSSMHCFEGPQWLHLKRGRESFARGPVVKVDPQGRCGGVLVYGLQM
Subjt:  ELVCHYRLHGNVESMAILSSRGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRTSSMHCFEGPQWLHLKRGRESFARGPVVKVDPQGRCGGVLVYGLQM

Query:  IILKASQAGSSLVVDDEAFGNTGAISARVESSYLINLRDLDVKHVKDFVFVHG
        IILKASQAGS LVVDDEAFGNTGAISARVESSYLINLRDLDVKHVKDFVFVHG
Subjt:  IILKASQAGSSLVVDDEAFGNTGAISARVESSYLINLRDLDVKHVKDFVFVHG

TrEMBL top hitse value%identityAlignment
A0A0A0LKI9 Uncharacterized protein1.1e-13695.65Show/hide
Query:  MSFAAYRMMHWPTGIENCDSGFITHSRADFVPGVTSHTDDLDSDWQPRREIGPVPNLVVTAGNVLEVYVVRVQEEGGRESRSSGEVRRGGIMDGVSGASL
        MSFAAYRMMHWPTGIENCDS +ITHSRADFVP VTSH+DDLDSDW PRR+IGPVPNLVVTAGNVLEVYVVRV EEGGRES+SSGEVRRGGIMDGVSGASL
Subjt:  MSFAAYRMMHWPTGIENCDSGFITHSRADFVPGVTSHTDDLDSDWQPRREIGPVPNLVVTAGNVLEVYVVRVQEEGGRESRSSGEVRRGGIMDGVSGASL

Query:  ELVCHYRLHGNVESMAILSSRGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRTSSMHCFEGPQWLHLKRGRESFARGPVVKVDPQGRCGGVLVYGLQM
        ELVCHYRLHGNVESMAILSSRGGDGSKKRDSIILVFQEAKISVLEFDDS HSLRTSSMHCF+GPQWLHLKRGRESFARGPVVKVDPQGRCGGVLVYGLQM
Subjt:  ELVCHYRLHGNVESMAILSSRGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRTSSMHCFEGPQWLHLKRGRESFARGPVVKVDPQGRCGGVLVYGLQM

Query:  IILKASQAGSSLVVDDEAFGNTGAISARVESSYLINLRDLDVKHVKDFVFVHG
        IILKASQAGS LVVDDEAFGNTGAISARVESSYLINLRDLDVKHVKDFVFVHG
Subjt:  IILKASQAGSSLVVDDEAFGNTGAISARVESSYLINLRDLDVKHVKDFVFVHG

A0A1S3B4E8 cleavage and polyadenylation specificity factor subunit 1 isoform X12.7e-13897.23Show/hide
Query:  MSFAAYRMMHWPTGIENCDSGFITHSRADFVPGVTSHTDDLDSDWQPRREIGPVPNLVVTAGNVLEVYVVRVQEEGGRESRSSGEVRRGGIMDGVSGASL
        MSFAAYRMMHWPTGIENCDS FITHSRADFVP VTSH+DDLDSDW PRR+IGPVPNLVVTAGNVLEVYVVRV EEGGRESRSSGEVRRGGIMDGVSGASL
Subjt:  MSFAAYRMMHWPTGIENCDSGFITHSRADFVPGVTSHTDDLDSDWQPRREIGPVPNLVVTAGNVLEVYVVRVQEEGGRESRSSGEVRRGGIMDGVSGASL

Query:  ELVCHYRLHGNVESMAILSSRGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRTSSMHCFEGPQWLHLKRGRESFARGPVVKVDPQGRCGGVLVYGLQM
        ELVCHYRLHGNVESMAILSSRGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRTSSMHCFEGPQWLHLKRGRESFARGPVVKVDPQGRCGGVLVYGLQM
Subjt:  ELVCHYRLHGNVESMAILSSRGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRTSSMHCFEGPQWLHLKRGRESFARGPVVKVDPQGRCGGVLVYGLQM

Query:  IILKASQAGSSLVVDDEAFGNTGAISARVESSYLINLRDLDVKHVKDFVFVHG
        IILKASQAGS LVVDDEAFGNTGAISARVESSYLINLRDLDVKHVKDFVFVHG
Subjt:  IILKASQAGSSLVVDDEAFGNTGAISARVESSYLINLRDLDVKHVKDFVFVHG

A0A5A7U6U4 Cleavage and polyadenylation specificity factor subunit 1 isoform X12.7e-13897.23Show/hide
Query:  MSFAAYRMMHWPTGIENCDSGFITHSRADFVPGVTSHTDDLDSDWQPRREIGPVPNLVVTAGNVLEVYVVRVQEEGGRESRSSGEVRRGGIMDGVSGASL
        MSFAAYRMMHWPTGIENCDS FITHSRADFVP VTSH+DDLDSDW PRR+IGPVPNLVVTAGNVLEVYVVRV EEGGRESRSSGEVRRGGIMDGVSGASL
Subjt:  MSFAAYRMMHWPTGIENCDSGFITHSRADFVPGVTSHTDDLDSDWQPRREIGPVPNLVVTAGNVLEVYVVRVQEEGGRESRSSGEVRRGGIMDGVSGASL

Query:  ELVCHYRLHGNVESMAILSSRGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRTSSMHCFEGPQWLHLKRGRESFARGPVVKVDPQGRCGGVLVYGLQM
        ELVCHYRLHGNVESMAILSSRGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRTSSMHCFEGPQWLHLKRGRESFARGPVVKVDPQGRCGGVLVYGLQM
Subjt:  ELVCHYRLHGNVESMAILSSRGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRTSSMHCFEGPQWLHLKRGRESFARGPVVKVDPQGRCGGVLVYGLQM

Query:  IILKASQAGSSLVVDDEAFGNTGAISARVESSYLINLRDLDVKHVKDFVFVHG
        IILKASQAGS LVVDDEAFGNTGAISARVESSYLINLRDLDVKHVKDFVFVHG
Subjt:  IILKASQAGSSLVVDDEAFGNTGAISARVESSYLINLRDLDVKHVKDFVFVHG

A0A6J1EY93 cleavage and polyadenylation specificity factor subunit 1 isoform X11.5e-13394.47Show/hide
Query:  MSFAAYRMMHWPTGIENCDSGFITHSRADFVPGVTSHTDDLDSDWQPRREIGPVPNLVVTAGNVLEVYVVRVQEEGGRESRSSGEVRRGGIMDGVSGASL
        MSFAAYRMMH PTGIENCDSGFITHSR+DFVP VTSH DDL+SDW PRREIGPVPNLVVTAGNVLEVYVVRVQE+GG+ESRSSGEVRRGGIMDGVSGASL
Subjt:  MSFAAYRMMHWPTGIENCDSGFITHSRADFVPGVTSHTDDLDSDWQPRREIGPVPNLVVTAGNVLEVYVVRVQEEGGRESRSSGEVRRGGIMDGVSGASL

Query:  ELVCHYRLHGNVESMAILSSRGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRTSSMHCFEGPQWLHLKRGRESFARGPVVKVDPQGRCGGVLVYGLQM
        ELVCHYRLHGNVESM ILSSRGGDGSKKRDSIILVF+EAKISVLEFDDSIHSLRTSSMHCFEGPQWLHLKRGRESFARGPVVKVDPQGRCGGVLVYGLQM
Subjt:  ELVCHYRLHGNVESMAILSSRGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRTSSMHCFEGPQWLHLKRGRESFARGPVVKVDPQGRCGGVLVYGLQM

Query:  IILKASQAGSSLVVDDEAFGNTGAISARVESSYLINLRDLDVKHVKDFVFVHG
        IILKASQAGS LVVDDEA GN GA SARVESSYLINLRDLDVKHVKDFVFVHG
Subjt:  IILKASQAGSSLVVDDEAFGNTGAISARVESSYLINLRDLDVKHVKDFVFVHG

A0A6J1I7X9 cleavage and polyadenylation specificity factor subunit 1 isoform X14.4e-13394.47Show/hide
Query:  MSFAAYRMMHWPTGIENCDSGFITHSRADFVPGVTSHTDDLDSDWQPRREIGPVPNLVVTAGNVLEVYVVRVQEEGGRESRSSGEVRRGGIMDGVSGASL
        MSFAAYRMMH PTGIENCDSGFITHSRADFVP VTSH DDL+SDW PRREIGPVPNLVVTAGNVLEVYVVRVQEEGG+ESRSSGEVRRGGIMDG+SGASL
Subjt:  MSFAAYRMMHWPTGIENCDSGFITHSRADFVPGVTSHTDDLDSDWQPRREIGPVPNLVVTAGNVLEVYVVRVQEEGGRESRSSGEVRRGGIMDGVSGASL

Query:  ELVCHYRLHGNVESMAILSSRGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRTSSMHCFEGPQWLHLKRGRESFARGPVVKVDPQGRCGGVLVYGLQM
        ELVCHYRLHGNVESM ILSSRGGDGSKKRDSIILVF+EAKISVLEFDDSIHSLRTSSMHCFEGPQWLHLKRGRESFARGPVVKVDPQGRCGGVLVYGLQM
Subjt:  ELVCHYRLHGNVESMAILSSRGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRTSSMHCFEGPQWLHLKRGRESFARGPVVKVDPQGRCGGVLVYGLQM

Query:  IILKASQAGSSLVVDDEAFGNTGAISARVESSYLINLRDLDVKHVKDFVFVHG
        IILKASQAGS LVVDDEA G  GA SARVESSYLINLRDLDVKHVKDFVFVHG
Subjt:  IILKASQAGSSLVVDDEAFGNTGAISARVESSYLINLRDLDVKHVKDFVFVHG

SwissProt top hitse value%identityAlignment
Q10569 Cleavage and polyadenylation specificity factor subunit 13.4e-2130.31Show/hide
Query:  FAAYRMMHWPTGIE-NCDSGFITHSRADFVPGVTSHTDDLDSDWQPRREIGPVPNLVVTAGNVLEVYVVRVQEEGGRESRSSGEVRRGGIMDGVSGASLE
        +A Y+  H PTG+E +    F  +S  + V   TS                             ++YV R+  +   E+ +  +    G         LE
Subjt:  FAAYRMMHWPTGIE-NCDSGFITHSRADFVPGVTSHTDDLDSDWQPRREIGPVPNLVVTAGNVLEVYVVRVQEEGGRESRSSGEVRRGGIMDGVSGASLE

Query:  LVCHYRLHGNVESMAILSSRGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRTSSMHCFEGPQWLHLKRGRESFARGPVVKVDPQGRCGGVLVYGLQMI
        LV  +   GNV SMA +   G     KRD+++L F++AK+SV+E+D   H L+T S+H FE P+   L+ G       P V+VDP GRC  +L+YG +++
Subjt:  LVCHYRLHGNVESMAILSSRGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRTSSMHCFEGPQWLHLKRGRESFARGPVVKVDPQGRCGGVLVYGLQMI

Query:  ILKASQAGSSLVVDDEAFGNTGAISARVESSYLINLRDLDVK--HVKDFVFVHG
        +L   +   SL  + E     G  S+ +  SY+I++R LD K  ++ D  F+HG
Subjt:  ILKASQAGSSLVVDDEAFGNTGAISARVESSYLINLRDLDVK--HVKDFVFVHG

Q10570 Cleavage and polyadenylation specificity factor subunit 13.7e-2035Show/hide
Query:  NLVVTAGNVLEVYVVRVQEEGGRESRSSGEVRRGGIMDGVSGASLELVCHYRLHGNVESMAILSSRGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRT
        NLVV   + L VY +    E   ++  S E +            LEL   +   GNV SMA +   G     KRD+++L F++AK+SV+E+D   H L+T
Subjt:  NLVVTAGNVLEVYVVRVQEEGGRESRSSGEVRRGGIMDGVSGASLELVCHYRLHGNVESMAILSSRGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRT

Query:  SSMHCFEGPQWLHLKRGRESFARGPVVKVDPQGRCGGVLVYGLQMIILKASQAGSSLVVDDEAFGNTGAISARVESSYLINLRDLDVK--HVKDFVFVHG
         S+H FE P+   L+ G       P V+VDP GRC  +LVYG ++++L   +   SL  + E     G  S+ +  SY+I++R LD K  ++ D  F+HG
Subjt:  SSMHCFEGPQWLHLKRGRESFARGPVVKVDPQGRCGGVLVYGLQMIILKASQAGSSLVVDDEAFGNTGAISARVESSYLINLRDLDVK--HVKDFVFVHG

Q7XWP1 Probable cleavage and polyadenylation specificity factor subunit 19.4e-8057.52Show/hide
Query:  MSFAAYRMMHWPTGIENCDSGFITHSRADFV---------PGVTSHTDDLDSDWQPRREIGPVPNLVVTAGNVLEVYVVRVQ---EEGGRESRSSGEVRR
        MS+AAY+MMHWPTG+++C +GF+THS +D           PG     D   +  +PRR +GP PNLVV A NVLEVY VR +   E+GG  ++ S     
Subjt:  MSFAAYRMMHWPTGIENCDSGFITHSRADFV---------PGVTSHTDDLDSDWQPRREIGPVPNLVVTAGNVLEVYVVRVQ---EEGGRESRSSGEVRR

Query:  GGIMDGVSGASLELVCHYRLHGNVESMAILSSRGGDGSK-KRDSIILVFQEAKISVLEFDDSIHSLRTSSMHCFEGPQWLHLKRGRESFARGPVVKVDPQ
        G ++DG+SGA LELVC+YRLHGN+ESM +LS    DG++ +R +I L F++AKI+ LEFDD+IH LRTSSMHCFEGP+W HLKRGRESFA GPV+K DP 
Subjt:  GGIMDGVSGASLELVCHYRLHGNVESMAILSSRGGDGSK-KRDSIILVFQEAKISVLEFDDSIHSLRTSSMHCFEGPQWLHLKRGRESFARGPVVKVDPQ

Query:  GRCGGVLVYGLQMIILKASQAGSSLVVDDEAFGNTGAISARVESSYLINLRDLDVKHVKDFVFVHG
        GRCG  L YGLQMIILKA+Q G SLV +DE      + +  +ESSYLI+LR LD+ HVKDF FVHG
Subjt:  GRCGGVLVYGLQMIILKASQAGSSLVVDDEAFGNTGAISARVESSYLINLRDLDVKHVKDFVFVHG

Q9EPU4 Cleavage and polyadenylation specificity factor subunit 13.4e-2129.92Show/hide
Query:  FAAYRMMHWPTGIE-NCDSGFITHSRADFVPGVTSHTDDLDSDWQPRREIGPVPNLVVTAGNVLEVYVVRVQEEGGRESRSSGEVRRGGIMDGVSGASLE
        +A Y+  H PTG+E      F  +S  + V   TS                             ++YV R+  +    +++ G        +      LE
Subjt:  FAAYRMMHWPTGIE-NCDSGFITHSRADFVPGVTSHTDDLDSDWQPRREIGPVPNLVVTAGNVLEVYVVRVQEEGGRESRSSGEVRRGGIMDGVSGASLE

Query:  LVCHYRLHGNVESMAILSSRGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRTSSMHCFEGPQWLHLKRGRESFARGPVVKVDPQGRCGGVLVYGLQMI
        LV  +   GNV SMA +   G     KRD+++L F++AK+SV+E+D   H L+T S+H FE P+   L+ G       P V+VDP GRC  +L+YG +++
Subjt:  LVCHYRLHGNVESMAILSSRGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRTSSMHCFEGPQWLHLKRGRESFARGPVVKVDPQGRCGGVLVYGLQMI

Query:  ILKASQAGSSLVVDDEAFGNTGAISARVESSYLINLRDLDVK--HVKDFVFVHG
        +L   +   SL  + E     G  S+ +  SY+I++R LD K  ++ D  F+HG
Subjt:  ILKASQAGSSLVVDDEAFGNTGAISARVESSYLINLRDLDVK--HVKDFVFVHG

Q9FGR0 Cleavage and polyadenylation specificity factor subunit 14.9e-10571.71Show/hide
Query:  MSFAAYRMMHWPTGIENCDSGFITHSRADF---VPGVTSHTDDLDSDW-QPRREIGPVPNLVVTAGNVLEVYVVRVQEEGG-RESRSSGEVRRGGIMDGV
        MSFAAY+MMHWPTG+ENC SG+ITHS +D    +P V+ H DD++++W  P+R IGP+PN+V+TA N+LEVY+VR QEEG  +E R+    +RGG+MDGV
Subjt:  MSFAAYRMMHWPTGIENCDSGFITHSRADF---VPGVTSHTDDLDSDW-QPRREIGPVPNLVVTAGNVLEVYVVRVQEEGG-RESRSSGEVRRGGIMDGV

Query:  SGASLELVCHYRLHGNVESMAILSSRGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRTSSMHCFEGPQWLHLKRGRESFARGPVVKVDPQGRCGGVLV
         G SLELVCHYRLHGNVES+A+L   GG+ SK RDSIIL F++AKISVLEFDDSIHSLR +SMHCFEGP WLHLKRGRESF RGP+VKVDPQGRCGGVLV
Subjt:  SGASLELVCHYRLHGNVESMAILSSRGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRTSSMHCFEGPQWLHLKRGRESFARGPVVKVDPQGRCGGVLV

Query:  YGLQMIILKASQAGSSLVVDDEAFGNTGAISARVESSYLINLRDLDVKHVKDFVFVHG
        YGLQMIILK SQ GS LV DD+AF + G +SARVESSY+INLRDL++KHVKDFVF+HG
Subjt:  YGLQMIILKASQAGSSLVVDDEAFGNTGAISARVESSYLINLRDLDVKHVKDFVFVHG

Arabidopsis top hitse value%identityAlignment
AT5G51660.1 cleavage and polyadenylation specificity factor 1603.5e-10671.71Show/hide
Query:  MSFAAYRMMHWPTGIENCDSGFITHSRADF---VPGVTSHTDDLDSDW-QPRREIGPVPNLVVTAGNVLEVYVVRVQEEGG-RESRSSGEVRRGGIMDGV
        MSFAAY+MMHWPTG+ENC SG+ITHS +D    +P V+ H DD++++W  P+R IGP+PN+V+TA N+LEVY+VR QEEG  +E R+    +RGG+MDGV
Subjt:  MSFAAYRMMHWPTGIENCDSGFITHSRADF---VPGVTSHTDDLDSDW-QPRREIGPVPNLVVTAGNVLEVYVVRVQEEGG-RESRSSGEVRRGGIMDGV

Query:  SGASLELVCHYRLHGNVESMAILSSRGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRTSSMHCFEGPQWLHLKRGRESFARGPVVKVDPQGRCGGVLV
         G SLELVCHYRLHGNVES+A+L   GG+ SK RDSIIL F++AKISVLEFDDSIHSLR +SMHCFEGP WLHLKRGRESF RGP+VKVDPQGRCGGVLV
Subjt:  SGASLELVCHYRLHGNVESMAILSSRGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRTSSMHCFEGPQWLHLKRGRESFARGPVVKVDPQGRCGGVLV

Query:  YGLQMIILKASQAGSSLVVDDEAFGNTGAISARVESSYLINLRDLDVKHVKDFVFVHG
        YGLQMIILK SQ GS LV DD+AF + G +SARVESSY+INLRDL++KHVKDFVF+HG
Subjt:  YGLQMIILKASQAGSSLVVDDEAFGNTGAISARVESSYLINLRDLDVKHVKDFVFVHG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTTTGCTGCTTATAGAATGATGCACTGGCCTACCGGCATCGAAAACTGCGATTCAGGCTTTATCACCCATTCTCGCGCCGACTTCGTCCCCGGTGTCACATCTCA
CACCGACGACCTTGACTCCGACTGGCAGCCCCGCCGAGAAATTGGTCCAGTTCCCAATCTCGTTGTCACCGCCGGCAATGTCCTCGAGGTATATGTTGTTAGGGTTCAAG
AAGAAGGTGGAAGAGAATCAAGAAGTTCAGGAGAAGTCAGACGCGGTGGCATTATGGATGGAGTCTCTGGGGCCTCGCTCGAGCTTGTTTGCCACTACAGGTTGCATGGT
AATGTTGAGTCCATGGCGATTTTGTCTAGTAGAGGAGGTGATGGTTCCAAGAAGAGAGATTCGATTATATTAGTCTTTCAAGAAGCAAAAATTTCAGTGCTAGAGTTTGA
TGATTCTATCCATAGTCTCCGTACAAGCTCAATGCATTGCTTTGAGGGCCCTCAATGGCTTCATTTGAAAAGAGGTCGGGAATCATTTGCAAGAGGTCCAGTGGTAAAGG
TTGATCCTCAAGGCAGGTGTGGAGGAGTTCTTGTTTATGGTTTGCAAATGATAATACTTAAGGCTTCTCAGGCTGGTTCTAGTTTGGTTGTGGACGATGAAGCTTTTGGT
AACACTGGTGCAATTTCTGCTCGAGTTGAATCATCATACCTAATTAACCTAAGGGATTTGGATGTGAAGCATGTAAAGGATTTTGTATTTGTACATGGTGAGTGTGTATA
G
mRNA sequenceShow/hide mRNA sequence
CGCCAAACCAAACCTCCCCAAAGCCCTAGTCTTGTGGTCTCTTCTTCTCTAGCCTCTGCTCCTCCACATTCCGTTTCCAAAGATGAGTTTTGCTGCTTATAGAATGATGC
ACTGGCCTACCGGCATCGAAAACTGCGATTCAGGCTTTATCACCCATTCTCGCGCCGACTTCGTCCCCGGTGTCACATCTCACACCGACGACCTTGACTCCGACTGGCAG
CCCCGCCGAGAAATTGGTCCAGTTCCCAATCTCGTTGTCACCGCCGGCAATGTCCTCGAGGTATATGTTGTTAGGGTTCAAGAAGAAGGTGGAAGAGAATCAAGAAGTTC
AGGAGAAGTCAGACGCGGTGGCATTATGGATGGAGTCTCTGGGGCCTCGCTCGAGCTTGTTTGCCACTACAGGTTGCATGGTAATGTTGAGTCCATGGCGATTTTGTCTA
GTAGAGGAGGTGATGGTTCCAAGAAGAGAGATTCGATTATATTAGTCTTTCAAGAAGCAAAAATTTCAGTGCTAGAGTTTGATGATTCTATCCATAGTCTCCGTACAAGC
TCAATGCATTGCTTTGAGGGCCCTCAATGGCTTCATTTGAAAAGAGGTCGGGAATCATTTGCAAGAGGTCCAGTGGTAAAGGTTGATCCTCAAGGCAGGTGTGGAGGAGT
TCTTGTTTATGGTTTGCAAATGATAATACTTAAGGCTTCTCAGGCTGGTTCTAGTTTGGTTGTGGACGATGAAGCTTTTGGTAACACTGGTGCAATTTCTGCTCGAGTTG
AATCATCATACCTAATTAACCTAAGGGATTTGGATGTGAAGCATGTAAAGGATTTTGTATTTGTACATGGTGAGTGTGTATAG
Protein sequenceShow/hide protein sequence
MSFAAYRMMHWPTGIENCDSGFITHSRADFVPGVTSHTDDLDSDWQPRREIGPVPNLVVTAGNVLEVYVVRVQEEGGRESRSSGEVRRGGIMDGVSGASLELVCHYRLHG
NVESMAILSSRGGDGSKKRDSIILVFQEAKISVLEFDDSIHSLRTSSMHCFEGPQWLHLKRGRESFARGPVVKVDPQGRCGGVLVYGLQMIILKASQAGSSLVVDDEAFG
NTGAISARVESSYLINLRDLDVKHVKDFVFVHGECV