CuGenDBv2

Gene ID	Lsi05G008650
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	ABC transporter C family member 2-like
Genome location	chr05:14560600..14568444
RNA-Seq Expression	Lsi05G008650
Synteny	Lsi05G008650
Gene Ontology terms	GO:0055085 - transmembrane transport (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0005524 - ATP binding (molecular function) GO:0140359 - ABC-type transmembrane transporter activity (molecular function)
InterPro domains	IPR003439 - ABC transporter-like, ATP-binding domain IPR027417 - P-loop containing nucleoside triphosphate hydrolase

Homology

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GenBank top hits

e value

%identity

Alignment

CAB4104857.1 unnamed protein product [Lactuca saligna]

1.7e-39

83.67

Show/hide

Query:  MLRELPPLGDSIVSIQGTIAYVPQLSWIFNATVRDNILFGTTFDSAKYEKTIDITALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSLARAVYSNSD
        ML ELPP+ DS V ++GT+AYVPQ+SWIFNATVRDNILFG+TF+S++YEKTID+TAL HDLDLLPGGDLTEIGERGVNISGGQKQRVS+ARAVYSNSD
Subjt:  MLRELPPLGDSIVSIQGTIAYVPQLSWIFNATVRDNILFGTTFDSAKYEKTIDITALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSLARAVYSNSD

PLY74646.1 hypothetical protein LSAT_7X31941 [Lactuca sativa]

2.2e-39

83.67

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Query:  MLRELPPLGDSIVSIQGTIAYVPQLSWIFNATVRDNILFGTTFDSAKYEKTIDITALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSLARAVYSNSD
        ML ELPP+ DS V ++GT+AYVPQ+SWIFNATVRDNILFG+TF+S +YEKTID+TAL HDLDLLPGGDLTEIGERGVNISGGQKQRVS+ARAVYSNSD
Subjt:  MLRELPPLGDSIVSIQGTIAYVPQLSWIFNATVRDNILFGTTFDSAKYEKTIDITALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSLARAVYSNSD

QIT08318.1 putative ABC transporter C family member 2-like protein [Siraitia grosvenorii]

2.2e-39

84.69

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Query:  MLRELPPLGDSIVSIQGTIAYVPQLSWIFNATVRDNILFGTTFDSAKYEKTIDITALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSLARAVYSNSD
        ML ELPP+ D+ V I+GT+AYVPQ++WIFNATVRDNILFG+ F+SA+YEK IDITALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSLARAVYSNSD
Subjt:  MLRELPPLGDSIVSIQGTIAYVPQLSWIFNATVRDNILFGTTFDSAKYEKTIDITALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSLARAVYSNSD

XP_022146679.1 ABC transporter C family member 2-like [Momordica charantia]

1.3e-39

85.71

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Query:  MLRELPPLGDSIVSIQGTIAYVPQLSWIFNATVRDNILFGTTFDSAKYEKTIDITALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSLARAVYSNSD
        ML ELPP+ D+ V I+GT+AYVPQ++WIFNATVRDNILFG+ FDSAKYEK I+ITALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSLARAVYSNSD
Subjt:  MLRELPPLGDSIVSIQGTIAYVPQLSWIFNATVRDNILFGTTFDSAKYEKTIDITALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSLARAVYSNSD

XP_042752778.1 ABC transporter C family member 2 [Lactuca sativa]

2.2e-39

83.67

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Query:  MLRELPPLGDSIVSIQGTIAYVPQLSWIFNATVRDNILFGTTFDSAKYEKTIDITALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSLARAVYSNSD
        ML ELPP+ DS V ++GT+AYVPQ+SWIFNATVRDNILFG+TF+S +YEKTID+TAL HDLDLLPGGDLTEIGERGVNISGGQKQRVS+ARAVYSNSD
Subjt:  MLRELPPLGDSIVSIQGTIAYVPQLSWIFNATVRDNILFGTTFDSAKYEKTIDITALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSLARAVYSNSD

TrEMBL top hits

e value

%identity

Alignment

A0A2J6KHS1 Uncharacterized protein

1.0e-39

83.67

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Query:  MLRELPPLGDSIVSIQGTIAYVPQLSWIFNATVRDNILFGTTFDSAKYEKTIDITALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSLARAVYSNSD
        ML ELPP+ DS V ++GT+AYVPQ+SWIFNATVRDNILFG+TF+S +YEKTID+TAL HDLDLLPGGDLTEIGERGVNISGGQKQRVS+ARAVYSNSD
Subjt:  MLRELPPLGDSIVSIQGTIAYVPQLSWIFNATVRDNILFGTTFDSAKYEKTIDITALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSLARAVYSNSD

A0A6A2WVY8 ABC transporter C family member 2

3.0e-39

81.63

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Query:  MLRELPPLGDSIVSIQGTIAYVPQLSWIFNATVRDNILFGTTFDSAKYEKTIDITALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSLARAVYSNSD
        ML ELPP+ D+ V ++GT+AYVPQ+SWIFNATVRDNILFG++FDSA+YEK ID+T+LQHDL+LLPGGDLTEIGERGVNISGGQKQRVS+ARAVYSNSD
Subjt:  MLRELPPLGDSIVSIQGTIAYVPQLSWIFNATVRDNILFGTTFDSAKYEKTIDITALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSLARAVYSNSD

A0A6H0F2I9 Putative ABC transporter C family member 2-like protein

1.0e-39

84.69

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Query:  MLRELPPLGDSIVSIQGTIAYVPQLSWIFNATVRDNILFGTTFDSAKYEKTIDITALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSLARAVYSNSD
        ML ELPP+ D+ V I+GT+AYVPQ++WIFNATVRDNILFG+ F+SA+YEK IDITALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSLARAVYSNSD
Subjt:  MLRELPPLGDSIVSIQGTIAYVPQLSWIFNATVRDNILFGTTFDSAKYEKTIDITALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSLARAVYSNSD

A0A6J1CYS4 ABC transporter C family member 2-like

6.1e-40

85.71

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Query:  MLRELPPLGDSIVSIQGTIAYVPQLSWIFNATVRDNILFGTTFDSAKYEKTIDITALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSLARAVYSNSD
        ML ELPP+ D+ V I+GT+AYVPQ++WIFNATVRDNILFG+ FDSAKYEK I+ITALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSLARAVYSNSD
Subjt:  MLRELPPLGDSIVSIQGTIAYVPQLSWIFNATVRDNILFGTTFDSAKYEKTIDITALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSLARAVYSNSD

A0A6S7NSN6 Uncharacterized protein

8.0e-40

83.67

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Query:  MLRELPPLGDSIVSIQGTIAYVPQLSWIFNATVRDNILFGTTFDSAKYEKTIDITALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSLARAVYSNSD
        ML ELPP+ DS V ++GT+AYVPQ+SWIFNATVRDNILFG+TF+S++YEKTID+TAL HDLDLLPGGDLTEIGERGVNISGGQKQRVS+ARAVYSNSD
Subjt:  MLRELPPLGDSIVSIQGTIAYVPQLSWIFNATVRDNILFGTTFDSAKYEKTIDITALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSLARAVYSNSD

SwissProt top hits

e value

%identity

Alignment

Q42093 ABC transporter C family member 2

6.5e-39

76.53

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Query:  MLRELPPLGDSIVSIQGTIAYVPQLSWIFNATVRDNILFGTTFDSAKYEKTIDITALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSLARAVYSNSD
        +L ELP   D+IV+++G++AYVPQ+SWIFNATVRDNILFG+ FD  KYE+ ID+T+L+HDL+LLPGGDLTEIGERGVNISGGQKQRVS+ARAVYSNSD
Subjt:  MLRELPPLGDSIVSIQGTIAYVPQLSWIFNATVRDNILFGTTFDSAKYEKTIDITALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSLARAVYSNSD

Q54JR2 ABC transporter C family member 3

2.7e-29

62.24

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Query:  MLRELPPLGDSIVSIQGTIAYVPQLSWIFNATVRDNILFGTTFDSAKYEKTIDITALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSLARAVYSNSD
        ML E+  L D  V+++G +AYVPQ +WI NAT++DNILFG+ +D AKY K +++ AL+ D++L P GDL EIGERGVN+SGGQKQRVS+ARAVYS+SD
Subjt:  MLRELPPLGDSIVSIQGTIAYVPQLSWIFNATVRDNILFGTTFDSAKYEKTIDITALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSLARAVYSNSD

Q9C8G9 ABC transporter C family member 1

1.7e-39

78.57

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Query:  MLRELPPLGDSIVSIQGTIAYVPQLSWIFNATVRDNILFGTTFDSAKYEKTIDITALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSLARAVYSNSD
        ML ELP   D+ V+++G++AYVPQ+SWIFNATVRDNILFG  FD  KYE+ ID+TALQHDL+LLPGGDLTEIGERGVNISGGQKQRVS+ARAVYSNSD
Subjt:  MLRELPPLGDSIVSIQGTIAYVPQLSWIFNATVRDNILFGTTFDSAKYEKTIDITALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSLARAVYSNSD

Q9C8H0 ABC transporter C family member 12

9.7e-35

74.49

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Query:  MLRELPPLGDSIVSIQGTIAYVPQLSWIFNATVRDNILFGTTFDSAKYEKTIDITALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSLARAVYSNSD
        ML EL     + V I+G++AYVPQ+SWIFNATVR+NILFG+ F+S +Y + ID TALQHDLDLLPG DLTEIGERGVNISGGQKQRVS+ARAVYSNSD
Subjt:  MLRELPPLGDSIVSIQGTIAYVPQLSWIFNATVRDNILFGTTFDSAKYEKTIDITALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSLARAVYSNSD

Q9C8H1 ABC transporter C family member 11

2.8e-34

72.45

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Query:  MLRELPPLGDSIVSIQGTIAYVPQLSWIFNATVRDNILFGTTFDSAKYEKTIDITALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSLARAVYSNSD
        ML EL     S V I+G++AYVPQ+SWIFNAT+R+NILFG+ F+S +Y + ID+TALQHDLDL PG D TEIGERGVNISGGQKQRVS+ARAVYSNSD
Subjt:  MLRELPPLGDSIVSIQGTIAYVPQLSWIFNATVRDNILFGTTFDSAKYEKTIDITALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSLARAVYSNSD

Arabidopsis top hits

e value

%identity

Alignment

AT1G30400.1 multidrug resistance-associated protein 1

1.2e-40

78.57

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Query:  MLRELPPLGDSIVSIQGTIAYVPQLSWIFNATVRDNILFGTTFDSAKYEKTIDITALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSLARAVYSNSD
        ML ELP   D+ V+++G++AYVPQ+SWIFNATVRDNILFG  FD  KYE+ ID+TALQHDL+LLPGGDLTEIGERGVNISGGQKQRVS+ARAVYSNSD
Subjt:  MLRELPPLGDSIVSIQGTIAYVPQLSWIFNATVRDNILFGTTFDSAKYEKTIDITALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSLARAVYSNSD

AT1G30400.2 multidrug resistance-associated protein 1

1.2e-40

78.57

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Query:  MLRELPPLGDSIVSIQGTIAYVPQLSWIFNATVRDNILFGTTFDSAKYEKTIDITALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSLARAVYSNSD
        ML ELP   D+ V+++G++AYVPQ+SWIFNATVRDNILFG  FD  KYE+ ID+TALQHDL+LLPGGDLTEIGERGVNISGGQKQRVS+ARAVYSNSD
Subjt:  MLRELPPLGDSIVSIQGTIAYVPQLSWIFNATVRDNILFGTTFDSAKYEKTIDITALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSLARAVYSNSD

AT1G30410.1 multidrug resistance-associated protein 13

6.9e-36

74.49

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Query:  MLRELPPLGDSIVSIQGTIAYVPQLSWIFNATVRDNILFGTTFDSAKYEKTIDITALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSLARAVYSNSD
        ML EL     + V I+G++AYVPQ+SWIFNATVR+NILFG+ F+S +Y + ID TALQHDLDLLPG DLTEIGERGVNISGGQKQRVS+ARAVYSNSD
Subjt:  MLRELPPLGDSIVSIQGTIAYVPQLSWIFNATVRDNILFGTTFDSAKYEKTIDITALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSLARAVYSNSD

AT2G34660.1 multidrug resistance-associated protein 2

4.6e-40

76.53

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Query:  MLRELPPLGDSIVSIQGTIAYVPQLSWIFNATVRDNILFGTTFDSAKYEKTIDITALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSLARAVYSNSD
        +L ELP   D+IV+++G++AYVPQ+SWIFNATVRDNILFG+ FD  KYE+ ID+T+L+HDL+LLPGGDLTEIGERGVNISGGQKQRVS+ARAVYSNSD
Subjt:  MLRELPPLGDSIVSIQGTIAYVPQLSWIFNATVRDNILFGTTFDSAKYEKTIDITALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSLARAVYSNSD

AT2G34660.2 multidrug resistance-associated protein 2

4.6e-40

76.53

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Query:  MLRELPPLGDSIVSIQGTIAYVPQLSWIFNATVRDNILFGTTFDSAKYEKTIDITALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSLARAVYSNSD
        +L ELP   D+IV+++G++AYVPQ+SWIFNATVRDNILFG+ FD  KYE+ ID+T+L+HDL+LLPGGDLTEIGERGVNISGGQKQRVS+ARAVYSNSD
Subjt:  MLRELPPLGDSIVSIQGTIAYVPQLSWIFNATVRDNILFGTTFDSAKYEKTIDITALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSLARAVYSNSD

Sequences

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CDS sequence

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ATGCTTAGAGAACTTCCACCACTTGGGGATTCAATTGTTTCTATTCAAGGAACTATTGCTTATGTTCCACAACTTTCTTGGATTTTTAATGCAACAGTGCGCGATAATAT
TTTATTTGGTACTACCTTTGATTCGGCCAAATATGAGAAGACAATCGATATAACTGCATTGCAGCATGACCTTGACTTACTACCAGGTGGTGATCTTACTGAAATTGGAG
AAAGAGGAGTGAATATTAGTGGTGGCCAAAAACAAAGAGTTTCATTGGCCAGGGCTGTCTATTCCAATTCTGATTCTAATACTCACAACACAAAGCTCCTTCTTCAGACA
GAAGATAAGATCTCCCCAGTACAGCTTCTTCTGATATAA

mRNA sequence

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GAAAGAACCACCCAAATCTCCCATCCAAAAGTCCTTATAAAAGATCTCCCAACTTTTCTTCCATAAACTTTCTATTACAATCTTTTCAAATCATTCGAAGACAAGCATAG
GAGAAAGATAGAAGCAACCAAGAGGATAAGAGGCCTACATTGTCAAACATTAATTTGGAGATACCAGTGGGTAGCTTAGTGGCAATTGTTGGAAGTACAGGGGAAGGGAA
GACATCATTACTATCAGCCATGCTTAGAGAACTTCCACCACTTGGGGATTCAATTGTTTCTATTCAAGGAACTATTGCTTATGTTCCACAACTTTCTTGGATTTTTAATG
CAACAGTGCGCGATAATATTTTATTTGGTACTACCTTTGATTCGGCCAAATATGAGAAGACAATCGATATAACTGCATTGCAGCATGACCTTGACTTACTACCAGGTGGT
GATCTTACTGAAATTGGAGAAAGAGGAGTGAATATTAGTGGTGGCCAAAAACAAAGAGTTTCATTGGCCAGGGCTGTCTATTCCAATTCTGATTCTAATACTCACAACAC
AAAGCTCCTTCTTCAGACAGAAGATAAGATCTCCCCAGTACAGCTTCTTCTGATATAA

Protein sequence

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MLRELPPLGDSIVSIQGTIAYVPQLSWIFNATVRDNILFGTTFDSAKYEKTIDITALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSLARAVYSNSDSNTHNTKLLLQT
EDKISPVQLLLI

Lsi05G008650 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome