CuGenDBv2

Gene ID	Lsi05G008940
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	NERD domain-containing protein
Genome location	chr05:15607798..15613280
RNA-Seq Expression	Lsi05G008940
Synteny	Lsi05G008940
Gene Ontology terms	NA
InterPro domains	IPR011528 - Nuclease-related domain, NERD

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004148346.1 uncharacterized protein LOC101206635 isoform X1 [Cucumis sativus]

6.7e-79

94.81

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Query:  MWAEILCGFLAFRVLRQFFFPRDELEIETIDSNALFAAASRLEKLYGGKTFVGLRIPDADTGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICE
        MWAEILCGFLAFRVLR+FFFPRDE+EIETIDS+ALFA ASRLEKLYGGK FVGLRIPDADTGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICE
Subjt:  MWAEILCGFLAFRVLRQFFFPRDELEIETIDSNALFAAASRLEKLYGGKTFVGLRIPDADTGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICE

Query:  GDGRQKSEILPDPVAETRRWVSILESYFEQRGVALPEGYLSWKVLVPNPKFRYV
        GDGRQKSEILPDPVAETRRWVSILESYFEQRGVALPEGYLSWKVL+PNPKFR +
Subjt:  GDGRQKSEILPDPVAETRRWVSILESYFEQRGVALPEGYLSWKVLVPNPKFRYV

XP_022957721.1 uncharacterized protein LOC111459180 [Cucurbita moschata]

2.6e-70

87.01

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Query:  MWAEILCGFLAFRVLRQFFFPRDELEIETIDSNALFAAASRLEKLYGGKTFVGLRIPDADTGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICE
        M+ EILCGF+AFR+LR+FF  RDELEIET DSNALFA ASRLEK+Y GK FVGLRIPDADTGLRQSIDMVLVTKGEAVV+ VKNLSGFVS+SADGSWICE
Subjt:  MWAEILCGFLAFRVLRQFFFPRDELEIETIDSNALFAAASRLEKLYGGKTFVGLRIPDADTGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICE

Query:  GDGRQKSEILPDPVAETRRWVSILESYFEQRGVALPEGYLSWKVLVPNPKFRYV
        GDGRQKSEILPDPVAETRRW SILESY E+RGVALPEGYLSWKVL+PNPKFR V
Subjt:  GDGRQKSEILPDPVAETRRWVSILESYFEQRGVALPEGYLSWKVLVPNPKFRYV

XP_023534697.1 uncharacterized protein LOC111796185 [Cucurbita pepo subsp. pepo]

4.4e-70

86.36

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Query:  MWAEILCGFLAFRVLRQFFFPRDELEIETIDSNALFAAASRLEKLYGGKTFVGLRIPDADTGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICE
        M+ EILCGF+AFR+LR+FF  RDELEIET DSNALFA ASRLEK+Y GK FVGLRIPDADTGLRQSIDMVLVTKGEAVV+ VKN+SGFVS+SADGSWICE
Subjt:  MWAEILCGFLAFRVLRQFFFPRDELEIETIDSNALFAAASRLEKLYGGKTFVGLRIPDADTGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICE

Query:  GDGRQKSEILPDPVAETRRWVSILESYFEQRGVALPEGYLSWKVLVPNPKFRYV
        GDGRQKSEILPDPVAETRRW SILESY E+RGVALPEGYLSWKVL+PNPKFR V
Subjt:  GDGRQKSEILPDPVAETRRWVSILESYFEQRGVALPEGYLSWKVLVPNPKFRYV

XP_031738513.1 uncharacterized protein LOC101206635 isoform X2 [Cucumis sativus]

6.7e-79

94.81

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Query:  MWAEILCGFLAFRVLRQFFFPRDELEIETIDSNALFAAASRLEKLYGGKTFVGLRIPDADTGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICE
        MWAEILCGFLAFRVLR+FFFPRDE+EIETIDS+ALFA ASRLEKLYGGK FVGLRIPDADTGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICE
Subjt:  MWAEILCGFLAFRVLRQFFFPRDELEIETIDSNALFAAASRLEKLYGGKTFVGLRIPDADTGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICE

Query:  GDGRQKSEILPDPVAETRRWVSILESYFEQRGVALPEGYLSWKVLVPNPKFRYV
        GDGRQKSEILPDPVAETRRWVSILESYFEQRGVALPEGYLSWKVL+PNPKFR +
Subjt:  GDGRQKSEILPDPVAETRRWVSILESYFEQRGVALPEGYLSWKVLVPNPKFRYV

XP_038888004.1 uncharacterized protein LOC120077943 [Benincasa hispida]

4.8e-77

94.08

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Query:  MWAEILCGFLAFRVLRQFFFPRDELEIETIDSNALFAAASRLEKLYGGKTFVGLRIPDADTGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICE
        MWAEILCGFLAFRVLR+FFFPRDE+EIETIDSNALFA ASRLEKLYGGK FVGLRIPDADTGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICE
Subjt:  MWAEILCGFLAFRVLRQFFFPRDELEIETIDSNALFAAASRLEKLYGGKTFVGLRIPDADTGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICE

Query:  GDGRQKSEILPDPVAETRRWVSILESYFEQRGVALPEGYLSWKVLVPNPKFR
        GDGRQKS ILPDPVAETRRWV ILESYFE+RGV LPEGYLSWKVL+PNPKFR
Subjt:  GDGRQKSEILPDPVAETRRWVSILESYFEQRGVALPEGYLSWKVLVPNPKFR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LKG9 NERD domain-containing protein

3.3e-79

94.81

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Query:  MWAEILCGFLAFRVLRQFFFPRDELEIETIDSNALFAAASRLEKLYGGKTFVGLRIPDADTGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICE
        MWAEILCGFLAFRVLR+FFFPRDE+EIETIDS+ALFA ASRLEKLYGGK FVGLRIPDADTGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICE
Subjt:  MWAEILCGFLAFRVLRQFFFPRDELEIETIDSNALFAAASRLEKLYGGKTFVGLRIPDADTGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICE

Query:  GDGRQKSEILPDPVAETRRWVSILESYFEQRGVALPEGYLSWKVLVPNPKFRYV
        GDGRQKSEILPDPVAETRRWVSILESYFEQRGVALPEGYLSWKVL+PNPKFR +
Subjt:  GDGRQKSEILPDPVAETRRWVSILESYFEQRGVALPEGYLSWKVLVPNPKFRYV

A0A6J1DTU9 uncharacterized protein LOC111023945

6.8e-69

83.77

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Query:  MWAEILCGFLAFRVLRQFFFPRDELEIETIDSNALFAAASRLEKLYGGKTFVGLRIPDADTGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICE
        MWAEILCGF+AFRVLR+FF P+DE+EIE  DSNA+FAAASRLEKLYGG+ F+GLRIPDADTG RQSIDMVLVTKG+AVVI VKNLSG VS+SADGSWICE
Subjt:  MWAEILCGFLAFRVLRQFFFPRDELEIETIDSNALFAAASRLEKLYGGKTFVGLRIPDADTGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICE

Query:  GDGRQKSEILPDPVAETRRWVSILESYFEQRGVALPEGYLSWKVLVPNPKFRYV
        GDG Q+SEI+PDPV ETRRW SILESY EQRGVALPEGYLS KVL+PNPKFR V
Subjt:  GDGRQKSEILPDPVAETRRWVSILESYFEQRGVALPEGYLSWKVLVPNPKFRYV

A0A6J1H014 uncharacterized protein LOC111459180

1.2e-70

87.01

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Query:  MWAEILCGFLAFRVLRQFFFPRDELEIETIDSNALFAAASRLEKLYGGKTFVGLRIPDADTGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICE
        M+ EILCGF+AFR+LR+FF  RDELEIET DSNALFA ASRLEK+Y GK FVGLRIPDADTGLRQSIDMVLVTKGEAVV+ VKNLSGFVS+SADGSWICE
Subjt:  MWAEILCGFLAFRVLRQFFFPRDELEIETIDSNALFAAASRLEKLYGGKTFVGLRIPDADTGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICE

Query:  GDGRQKSEILPDPVAETRRWVSILESYFEQRGVALPEGYLSWKVLVPNPKFRYV
        GDGRQKSEILPDPVAETRRW SILESY E+RGVALPEGYLSWKVL+PNPKFR V
Subjt:  GDGRQKSEILPDPVAETRRWVSILESYFEQRGVALPEGYLSWKVLVPNPKFRYV

A0A6J1K1B0 uncharacterized protein LOC111490811

3.6e-70

86.36

Show/hide

Query:  MWAEILCGFLAFRVLRQFFFPRDELEIETIDSNALFAAASRLEKLYGGKTFVGLRIPDADTGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICE
        MW EILCGF+AFR+LR+FF   D LEIET DSNALFA ASRLEK+Y GK FVGLRIPDADTGLRQSIDMVLVTKGEAVV+ VKNLSGFVS+SADGSWICE
Subjt:  MWAEILCGFLAFRVLRQFFFPRDELEIETIDSNALFAAASRLEKLYGGKTFVGLRIPDADTGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICE

Query:  GDGRQKSEILPDPVAETRRWVSILESYFEQRGVALPEGYLSWKVLVPNPKFRYV
        GDGRQKSEILPDPVAETRRW SILESY E+RGVALPEGYLSWKVL+PNPKFR V
Subjt:  GDGRQKSEILPDPVAETRRWVSILESYFEQRGVALPEGYLSWKVLVPNPKFRYV

A0A7J7CMM4 Plasma membrane isoform 1

1.0e-56

65.82

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Query:  MWAEILCGFLAFRVLRQFFFPRDELEIETIDSNALFAAASRLEKLYGGKTFVGLRIPDADTGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICE
        MW EI CG + ++++R+FF   D L++ET DSNA+F+ A+RLEKLYGGK +VGLRIPD DTG RQ+IDMVLVTKGEAVVI VKNL+GFVS++ DGSW+CE
Subjt:  MWAEILCGFLAFRVLRQFFFPRDELEIETIDSNALFAAASRLEKLYGGKTFVGLRIPDADTGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICE

Query:  GDGRQKSEILPDPVAETRRWVSILESYFEQRGVALPEGYLSWKVLVPNPKFRYVTDDS
        GDGR ++E  PDPVAE +R  SILE+Y EQRGVALPEGY S+K+++PNPK R +   S
Subjt:  GDGRQKSEILPDPVAETRRWVSILESYFEQRGVALPEGYLSWKVLVPNPKFRYVTDDS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G65020.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NERD (InterPro:IPR011528); Has 69 Blast hits to 69 proteins in 27 species: Archae - 0; Bacteria - 18; Metazoa - 8; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).

7.5e-52

55.11

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Query:  MWAEILCGFLAFRVLRQFFFPRDELEIETIDSNALFAAASRLEKLYGGKTFVGLRIPDADTGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICE
        MW EI+CG + ++++R+FF+  +  ++ET DS ALF+ A RLEKLYGGK +VGLRIPDADT  RQ ID+VLVTKG+ VVI VKNLSG V++++DGSW+CE
Subjt:  MWAEILCGFLAFRVLRQFFFPRDELEIETIDSNALFAAASRLEKLYGGKTFVGLRIPDADTGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICE

Query:  GDGRQKSEILPDPVAETRRWVSILESYFEQRGVALPEGYLSWKVLVPNPKFRYV-TDDSLFMLFDD--GLVPYSKS
        G     +E  PDP+AE ++  S+LESY EQRGV L EG +S KV++PNP FR +    S  + ++D   L P SKS
Subjt:  GDGRQKSEILPDPVAETRRWVSILESYFEQRGVALPEGYLSWKVLVPNPKFRYV-TDDSLFMLFDD--GLVPYSKS

Sequences

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CDS sequence

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ATGTGGGCGGAGATTCTCTGTGGTTTCTTAGCATTTAGAGTGCTCAGGCAATTCTTTTTTCCAAGAGATGAATTGGAGATCGAGACCATTGACTCTAATGCCCTATTCGC
TGCTGCGTCGAGGCTAGAGAAGCTTTATGGTGGAAAGACTTTTGTGGGACTTCGAATTCCAGATGCTGACACTGGTTTGCGACAGAGTATTGATATGGTGCTTGTAACGA
AAGGGGAAGCAGTGGTGATATGTGTCAAAAATCTTTCAGGTTTTGTTTCCATGAGTGCTGATGGAAGCTGGATCTGTGAAGGTGATGGTAGACAAAAGTCAGAGATTCTT
CCTGATCCGGTAGCTGAGACACGAAGATGGGTTTCAATTCTTGAATCATATTTTGAGCAGAGAGGAGTTGCACTGCCAGAAGGATATTTATCGTGGAAAGTTCTGGTTCC
CAACCCAAAATTCCGGTATGTAACGGATGATTCTCTTTTTATGCTTTTTGACGATGGACTTGTTCCTTACAGCAAAAGTTAA

mRNA sequence

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ATGCAATTATTTTTTCGTTGGTGTGGTCGGACTCCCACTTAGCTCTGGCAAAGTCGCAATCGTGTACTTTCTAGTTGCCTTGATCGAGTAGTTTTTTCCTCTGAACATAC
GTCGAGGGTGCTGTCATGTGGGCGGAGATTCTCTGTGGTTTCTTAGCATTTAGAGTGCTCAGGCAATTCTTTTTTCCAAGAGATGAATTGGAGATCGAGACCATTGACTC
TAATGCCCTATTCGCTGCTGCGTCGAGGCTAGAGAAGCTTTATGGTGGAAAGACTTTTGTGGGACTTCGAATTCCAGATGCTGACACTGGTTTGCGACAGAGTATTGATA
TGGTGCTTGTAACGAAAGGGGAAGCAGTGGTGATATGTGTCAAAAATCTTTCAGGTTTTGTTTCCATGAGTGCTGATGGAAGCTGGATCTGTGAAGGTGATGGTAGACAA
AAGTCAGAGATTCTTCCTGATCCGGTAGCTGAGACACGAAGATGGGTTTCAATTCTTGAATCATATTTTGAGCAGAGAGGAGTTGCACTGCCAGAAGGATATTTATCGTG
GAAAGTTCTGGTTCCCAACCCAAAATTCCGGTATGTAACGGATGATTCTCTTTTTATGCTTTTTGACGATGGACTTGTTCCTTACAGCAAAAGTTAA

Protein sequence

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MWAEILCGFLAFRVLRQFFFPRDELEIETIDSNALFAAASRLEKLYGGKTFVGLRIPDADTGLRQSIDMVLVTKGEAVVICVKNLSGFVSMSADGSWICEGDGRQKSEIL
PDPVAETRRWVSILESYFEQRGVALPEGYLSWKVLVPNPKFRYVTDDSLFMLFDDGLVPYSKS

Lsi05G008940 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome