CuGenDBv2

Gene ID	Lsi05G009060
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	protein PALE CRESS, chloroplastic
Genome location	chr05:16232220..16232743
RNA-Seq Expression	Lsi05G009060
Synteny	Lsi05G009060
Gene Ontology terms	GO:0009658 - chloroplast organization (biological process) GO:0009965 - leaf morphogenesis (biological process) GO:0010239 - chloroplast mRNA processing (biological process) GO:0042254 - ribosome biogenesis (biological process) GO:0071482 - cellular response to light stimulus (biological process) GO:0009501 - amyloplast (cellular component) GO:0009509 - chromoplast (cellular component) GO:0009513 - etioplast (cellular component) GO:0009537 - proplastid (cellular component) GO:0042644 - chloroplast nucleoid (cellular component) GO:0019843 - rRNA binding (molecular function) GO:0043621 - protein self-association (molecular function)
InterPro domains	IPR034563 - Protein PALE CRESS

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0057380.1 protein PALE CRESS [Cucumis melo var. makuwa]

1.3e-58

90.77

Show/hide

Query:  MRLLNELLNMYDGFDDEGWLKDCRKRMVDTFPREDPFSILVPAGLDIDKHQGPLRPSLEVEADNTLLRVDFVREVDELLQDVGANQSELQNTNADGFDAE
        MRLLNELLNMYDGFD+EGWLK CRK MVDTFPREDPFSILVPAG DIDKHQGPLRPSL VEADNTLLRVDFVREVDELLQ+VGA QS++QN NAD FDAE
Subjt:  MRLLNELLNMYDGFDDEGWLKDCRKRMVDTFPREDPFSILVPAGLDIDKHQGPLRPSLEVEADNTLLRVDFVREVDELLQDVGANQSELQNTNADGFDAE

Query:  SVASRLKQQEKQRTIRLVEALLDLAINLKW
        SVASRLKQQEKQRTIRLVEALLDLA+NLKW
Subjt:  SVASRLKQQEKQRTIRLVEALLDLAINLKW

KAG7036373.1 Protein PALE CRESS, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]

2.9e-58

87.69

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Query:  MRLLNELLNMYDGFDDEGWLKDCRKRMVDTFPREDPFSILVPAGLDIDKHQGPLRPSLEVEADNTLLRVDFVREVDELLQDVGANQSELQNTNADGFDAE
        MRLLN+LLNMYD F+DEGWLKDCRKRM+DTFPREDPFSILVPAG DIDKHQG LRPSLEVEADNTLLRVDFVREVDELLQ+V A+QSE+QN NADGFDAE
Subjt:  MRLLNELLNMYDGFDDEGWLKDCRKRMVDTFPREDPFSILVPAGLDIDKHQGPLRPSLEVEADNTLLRVDFVREVDELLQDVGANQSELQNTNADGFDAE

Query:  SVASRLKQQEKQRTIRLVEALLDLAINLKW
        SVASRLKQQEKQRT+RLVE LL+LA+NL+W
Subjt:  SVASRLKQQEKQRTIRLVEALLDLAINLKW

XP_008449384.1 PREDICTED: protein PALE CRESS, chloroplastic [Cucumis melo]

1.3e-58

90.77

Show/hide

Query:  MRLLNELLNMYDGFDDEGWLKDCRKRMVDTFPREDPFSILVPAGLDIDKHQGPLRPSLEVEADNTLLRVDFVREVDELLQDVGANQSELQNTNADGFDAE
        MRLLNELLNMYDGFD+EGWLK CRK MVDTFPREDPFSILVPAG DIDKHQGPLRPSL VEADNTLLRVDFVREVDELLQ+VGA QS++QN NAD FDAE
Subjt:  MRLLNELLNMYDGFDDEGWLKDCRKRMVDTFPREDPFSILVPAGLDIDKHQGPLRPSLEVEADNTLLRVDFVREVDELLQDVGANQSELQNTNADGFDAE

Query:  SVASRLKQQEKQRTIRLVEALLDLAINLKW
        SVASRLKQQEKQRTIRLVEALLDLA+NLKW
Subjt:  SVASRLKQQEKQRTIRLVEALLDLAINLKW

XP_038888470.1 protein PALE CRESS, chloroplastic isoform X1 [Benincasa hispida]

1.5e-62

94.62

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Query:  MRLLNELLNMYDGFDDEGWLKDCRKRMVDTFPREDPFSILVPAGLDIDKHQGPLRPSLEVEADNTLLRVDFVREVDELLQDVGANQSELQNTNADGFDAE
        MRLLNELLNMYDGFDDEGWLK+CRKRMVDTFPREDPFSILVPAG DIDKHQGPLRPSLEVEADNTLLRVDFVREVDELLQ+VGA+QSE+QN NADGFDAE
Subjt:  MRLLNELLNMYDGFDDEGWLKDCRKRMVDTFPREDPFSILVPAGLDIDKHQGPLRPSLEVEADNTLLRVDFVREVDELLQDVGANQSELQNTNADGFDAE

Query:  SVASRLKQQEKQRTIRLVEALLDLAINLKW
        SVASRLKQQEKQRTIRLVEALLDLA+NLKW
Subjt:  SVASRLKQQEKQRTIRLVEALLDLAINLKW

XP_038888471.1 protein PALE CRESS, chloroplastic isoform X2 [Benincasa hispida]

1.5e-62

94.62

Show/hide

Query:  MRLLNELLNMYDGFDDEGWLKDCRKRMVDTFPREDPFSILVPAGLDIDKHQGPLRPSLEVEADNTLLRVDFVREVDELLQDVGANQSELQNTNADGFDAE
        MRLLNELLNMYDGFDDEGWLK+CRKRMVDTFPREDPFSILVPAG DIDKHQGPLRPSLEVEADNTLLRVDFVREVDELLQ+VGA+QSE+QN NADGFDAE
Subjt:  MRLLNELLNMYDGFDDEGWLKDCRKRMVDTFPREDPFSILVPAGLDIDKHQGPLRPSLEVEADNTLLRVDFVREVDELLQDVGANQSELQNTNADGFDAE

Query:  SVASRLKQQEKQRTIRLVEALLDLAINLKW
        SVASRLKQQEKQRTIRLVEALLDLA+NLKW
Subjt:  SVASRLKQQEKQRTIRLVEALLDLAINLKW

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KJC6 Uncharacterized protein

1.8e-58

Show/hide

Query:  MRLLNELLNMYDGFDDEGWLKDCRKRMVDTFPREDPFSILVPAGLDIDKHQGPLRPSLEVEADNTLLRVDFVREVDELLQDVGANQSELQNTNADGFDAE
        MRLLNELLNMYDGFD+EGWLK CRK MVDTFPREDPFSILVPAG DIDKHQGPLRPSL VE+DNTLLRVDFVREVDELLQ+VGA QS++QN NAD FDAE
Subjt:  MRLLNELLNMYDGFDDEGWLKDCRKRMVDTFPREDPFSILVPAGLDIDKHQGPLRPSLEVEADNTLLRVDFVREVDELLQDVGANQSELQNTNADGFDAE

Query:  SVASRLKQQEKQRTIRLVEALLDLAINLKW
        SVASRLKQQEKQRTIRLVEALLDLA+NLKW
Subjt:  SVASRLKQQEKQRTIRLVEALLDLAINLKW

A0A1S3BMU2 protein PALE CRESS, chloroplastic

6.3e-59

90.77

Show/hide

Query:  MRLLNELLNMYDGFDDEGWLKDCRKRMVDTFPREDPFSILVPAGLDIDKHQGPLRPSLEVEADNTLLRVDFVREVDELLQDVGANQSELQNTNADGFDAE
        MRLLNELLNMYDGFD+EGWLK CRK MVDTFPREDPFSILVPAG DIDKHQGPLRPSL VEADNTLLRVDFVREVDELLQ+VGA QS++QN NAD FDAE
Subjt:  MRLLNELLNMYDGFDDEGWLKDCRKRMVDTFPREDPFSILVPAGLDIDKHQGPLRPSLEVEADNTLLRVDFVREVDELLQDVGANQSELQNTNADGFDAE

Query:  SVASRLKQQEKQRTIRLVEALLDLAINLKW
        SVASRLKQQEKQRTIRLVEALLDLA+NLKW
Subjt:  SVASRLKQQEKQRTIRLVEALLDLAINLKW

A0A5A7UQJ1 Protein PALE CRESS

6.3e-59

90.77

Show/hide

Query:  MRLLNELLNMYDGFDDEGWLKDCRKRMVDTFPREDPFSILVPAGLDIDKHQGPLRPSLEVEADNTLLRVDFVREVDELLQDVGANQSELQNTNADGFDAE
        MRLLNELLNMYDGFD+EGWLK CRK MVDTFPREDPFSILVPAG DIDKHQGPLRPSL VEADNTLLRVDFVREVDELLQ+VGA QS++QN NAD FDAE
Subjt:  MRLLNELLNMYDGFDDEGWLKDCRKRMVDTFPREDPFSILVPAGLDIDKHQGPLRPSLEVEADNTLLRVDFVREVDELLQDVGANQSELQNTNADGFDAE

Query:  SVASRLKQQEKQRTIRLVEALLDLAINLKW
        SVASRLKQQEKQRTIRLVEALLDLA+NLKW
Subjt:  SVASRLKQQEKQRTIRLVEALLDLAINLKW

A0A5D3E2R9 Protein PALE CRESS

6.3e-59

90.77

Show/hide

Query:  MRLLNELLNMYDGFDDEGWLKDCRKRMVDTFPREDPFSILVPAGLDIDKHQGPLRPSLEVEADNTLLRVDFVREVDELLQDVGANQSELQNTNADGFDAE
        MRLLNELLNMYDGFD+EGWLK CRK MVDTFPREDPFSILVPAG DIDKHQGPLRPSL VEADNTLLRVDFVREVDELLQ+VGA QS++QN NAD FDAE
Subjt:  MRLLNELLNMYDGFDDEGWLKDCRKRMVDTFPREDPFSILVPAGLDIDKHQGPLRPSLEVEADNTLLRVDFVREVDELLQDVGANQSELQNTNADGFDAE

Query:  SVASRLKQQEKQRTIRLVEALLDLAINLKW
        SVASRLKQQEKQRTIRLVEALLDLA+NLKW
Subjt:  SVASRLKQQEKQRTIRLVEALLDLAINLKW

A0A6J1EYI4 protein PALE CRESS, chloroplastic

1.2e-57

86.92

Show/hide

Query:  MRLLNELLNMYDGFDDEGWLKDCRKRMVDTFPREDPFSILVPAGLDIDKHQGPLRPSLEVEADNTLLRVDFVREVDELLQDVGANQSELQNTNADGFDAE
        MRLLN+LLNMYD F+DEGWLKDCRK M+DTFPREDPFSILVPAG DIDKHQG LRPSLEVEADNTLLRVDFVREVDELLQ+V A+QSE+QN NADGFDAE
Subjt:  MRLLNELLNMYDGFDDEGWLKDCRKRMVDTFPREDPFSILVPAGLDIDKHQGPLRPSLEVEADNTLLRVDFVREVDELLQDVGANQSELQNTNADGFDAE

Query:  SVASRLKQQEKQRTIRLVEALLDLAINLKW
        SVASRLKQQEKQRT+RLVE LL+LA+NL+W
Subjt:  SVASRLKQQEKQRTIRLVEALLDLAINLKW

SwissProt top hits

e value

%identity

Alignment

Q39089 Protein PALE CRESS, chloroplastic

4.1e-47

66.92

Show/hide

Query:  MRLLNELLNMYDGFDDEGWLKDCRKRMVDTFPREDPFSILVPAGLDIDKHQGPLRPSLEVEADNTLLRVDFVREVDELLQDVGANQSELQNTNADGFDAE
        M+LLN+LLNM+DGF+D+ WLKDCRKRM +TFPREDPFSIL+P G DID HQG LRP +E E DNTLLRVDFVREVD LLQ+V   +     +  +G D E
Subjt:  MRLLNELLNMYDGFDDEGWLKDCRKRMVDTFPREDPFSILVPAGLDIDKHQGPLRPSLEVEADNTLLRVDFVREVDELLQDVGANQSELQNTNADGFDAE

Query:  SVASRLKQQEKQRTIRLVEALLDLAINLKW
        ++A + KQQEKQRTIR +EA+LDLA+NLKW
Subjt:  SVASRLKQQEKQRTIRLVEALLDLAINLKW

Arabidopsis top hits

e value

%identity

Alignment

AT2G48120.1 pale cress protein (PAC)

2.9e-48

66.92

Show/hide

Query:  MRLLNELLNMYDGFDDEGWLKDCRKRMVDTFPREDPFSILVPAGLDIDKHQGPLRPSLEVEADNTLLRVDFVREVDELLQDVGANQSELQNTNADGFDAE
        M+LLN+LLNM+DGF+D+ WLKDCRKRM +TFPREDPFSIL+P G DID HQG LRP +E E DNTLLRVDFVREVD LLQ+V   +     +  +G D E
Subjt:  MRLLNELLNMYDGFDDEGWLKDCRKRMVDTFPREDPFSILVPAGLDIDKHQGPLRPSLEVEADNTLLRVDFVREVDELLQDVGANQSELQNTNADGFDAE

Query:  SVASRLKQQEKQRTIRLVEALLDLAINLKW
        ++A + KQQEKQRTIR +EA+LDLA+NLKW
Subjt:  SVASRLKQQEKQRTIRLVEALLDLAINLKW

AT2G48120.2 pale cress protein (PAC)

2.9e-48

66.92

Show/hide

Query:  MRLLNELLNMYDGFDDEGWLKDCRKRMVDTFPREDPFSILVPAGLDIDKHQGPLRPSLEVEADNTLLRVDFVREVDELLQDVGANQSELQNTNADGFDAE
        M+LLN+LLNM+DGF+D+ WLKDCRKRM +TFPREDPFSIL+P G DID HQG LRP +E E DNTLLRVDFVREVD LLQ+V   +     +  +G D E
Subjt:  MRLLNELLNMYDGFDDEGWLKDCRKRMVDTFPREDPFSILVPAGLDIDKHQGPLRPSLEVEADNTLLRVDFVREVDELLQDVGANQSELQNTNADGFDAE

Query:  SVASRLKQQEKQRTIRLVEALLDLAINLKW
        ++A + KQQEKQRTIR +EA+LDLA+NLKW
Subjt:  SVASRLKQQEKQRTIRLVEALLDLAINLKW

Sequences

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CDS sequence

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ATGAGACTCCTCAACGAACTTCTGAATATGTATGACGGCTTTGATGATGAAGGATGGCTAAAGGACTGCAGAAAACGCATGGTCGACACCTTTCCGCGGGAGGATCCATT
TAGCATTCTCGTTCCAGCTGGATTAGACATCGATAAGCATCAAGGGCCGTTACGGCCATCTCTTGAAGTTGAAGCTGATAATACGTTGTTGAGAGTAGACTTCGTCAGAG
AGGTTGATGAATTGCTACAAGATGTTGGAGCGAATCAGAGTGAACTACAAAATACAAATGCAGATGGTTTTGATGCGGAATCGGTGGCAAGTAGGTTGAAACAACAGGAG
AAACAACGAACAATAAGATTGGTAGAAGCGCTGCTAGATTTGGCTATAAATCTGAAGTGGTAG

mRNA sequence

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Protein sequence

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MRLLNELLNMYDGFDDEGWLKDCRKRMVDTFPREDPFSILVPAGLDIDKHQGPLRPSLEVEADNTLLRVDFVREVDELLQDVGANQSELQNTNADGFDAESVASRLKQQE
KQRTIRLVEALLDLAINLKW

Lsi05G009060 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome