CuGenDBv2

Gene ID	Lsi05G009410
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Spindle pole body-associated protein
Genome location	chr05:16549814..16552947
RNA-Seq Expression	Lsi05G009410
Synteny	Lsi05G009410
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004140096.1 uncharacterized protein LOC101202761 [Cucumis sativus]

3.8e-42

64.29

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Query:  MGAVSLLLPTSLRCYHFPSSTRTLLSNFAASSQLLSFAHKSTKFRTKTVVFGNQSGNENDSQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSW------
        MGAVS  L +SLR Y FPSST+TLLSNFAASSQLLSF    TKFR+KT+VFG QSGN+NDSQFLDENGVV+DMDGYLNYHSFEYDSVWDTKP+W      
Subjt:  MGAVSLLLPTSLRCYHFPSSTRTLLSNFAASSQLLSFAHKSTKFRTKTVVFGNQSGNENDSQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSW------

Query:  -------LAFHFGAFFFHHFYSRFLIL------FFSNYVNEAYSDMIAERRRKVSDGLEDTFGVKRTQ
               +A  + A       +  L L       F     +AYS+MIAERRRKVSDGLEDTFGVKRTQ
Subjt:  -------LAFHFGAFFFHHFYSRFLIL------FFSNYVNEAYSDMIAERRRKVSDGLEDTFGVKRTQ

XP_008449434.1 PREDICTED: uncharacterized protein LOC103491324 isoform X1 [Cucumis melo]

7.0e-44

66.67

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Query:  MGAVSLLLPTSLRCYHFPSSTRTLLSNFAASSQLLSFAHKSTKFRTKTVVFGNQSGNENDSQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSW------
        MGA+SLLL TSL  YHFPSST+TLLSNFAASSQLLSF  K TKFRTKT+VFG QS  +NDSQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSW      
Subjt:  MGAVSLLLPTSLRCYHFPSSTRTLLSNFAASSQLLSFAHKSTKFRTKTVVFGNQSGNENDSQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSW------

Query:  -------LAFHFGAFFFHHFYSRFLIL------FFSNYVNEAYSDMIAERRRKVSDGLEDTFGVKRTQ
               +A  + A       +  L L       F     +AYS+MIAERRRKVSDGLEDTFGVKRTQ
Subjt:  -------LAFHFGAFFFHHFYSRFLIL------FFSNYVNEAYSDMIAERRRKVSDGLEDTFGVKRTQ

XP_022967429.1 uncharacterized protein LOC111466970 [Cucurbita maxima]

1.9e-41

60.34

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Query:  YRKPNSMGAVSLLLPTSLRCYHFPSSTRTLLSNFAASSQLLSFAHKSTKFRTKTVVFGNQSGNENDSQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSW
        + KP SMG VSL L TSLR +HFP ST+TLLSNFAASSQ++SF  K T+FR K+VVFG QS NE++SQFLDENG V+DMDGYLNYHSFEYDSVWDTKPSW
Subjt:  YRKPNSMGAVSLLLPTSLRCYHFPSSTRTLLSNFAASSQLLSFAHKSTKFRTKTVVFGNQSGNENDSQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSW

Query:  -----------LAFHFGAFFFHHFYSRFLIL--------FFSNYVNEAYSDMIAERRRKVSDGLEDTFGVKRTQ
                   L                ++L         F     +AYSDMIAERRRKVSDG+EDTFGVKRTQ
Subjt:  -----------LAFHFGAFFFHHFYSRFLIL--------FFSNYVNEAYSDMIAERRRKVSDGLEDTFGVKRTQ

XP_023553740.1 uncharacterized protein LOC111811218 [Cucurbita pepo subsp. pepo]

2.3e-39

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Query:  MGAVSLLLPTSLRCYHFPSSTRTLLSNFAASSQLLSFAHKSTKFRTKTVVFGNQSGNENDSQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSWL-----
        MG VSL L TSLR +HFP ST+TLLSNFAASSQ++SF  K T+FR K+VVFG QS NE++SQFLDENG V+DMDGYLNYHSFEYDSVWDTKPSW      
Subjt:  MGAVSLLLPTSLRCYHFPSSTRTLLSNFAASSQLLSFAHKSTKFRTKTVVFGNQSGNENDSQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSWL-----

Query:  ----------------AFHFGAFFFHHFYSRFLILFFSNYVNEAYSDMIAERRRKVSDGLEDTFGVKRTQ
                        +    A       S + I  +S    +AY+DMIAERRRKVSDG+EDTFGVKRTQ
Subjt:  ----------------AFHFGAFFFHHFYSRFLILFFSNYVNEAYSDMIAERRRKVSDGLEDTFGVKRTQ

XP_038887717.1 uncharacterized protein LOC120077773 [Benincasa hispida]

7.0e-44

64.5

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Query:  GAVSLLLPTSLRCYHFPSSTRTLLSNFAASSQLLSFAHKSTKFRTKTVVFGNQSGNENDSQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSWL------
        GA+SL LPTSLR +H PSST+TLLSNF ASSQLLSF   STKFRTKTVVF NQSG ENDSQFLDENGVV+DMDGYLNYHSFEYDSVWDTKPSW       
Subjt:  GAVSLLLPTSLRCYHFPSSTRTLLSNFAASSQLLSFAHKSTKFRTKTVVFGNQSGNENDSQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSWL------

Query:  ---------------AFHFGAFFFHHFYSRFLILFFSNYVNEAYSDMIAERRRKVSDGLEDTFGVKRTQ
                       +    A  F      + I  +S    +AYS+MIAERRRKVSDG+EDTFGVKRTQ
Subjt:  ---------------AFHFGAFFFHHFYSRFLILFFSNYVNEAYSDMIAERRRKVSDGLEDTFGVKRTQ

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KED9 Uncharacterized protein

1.9e-42

64.29

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Query:  MGAVSLLLPTSLRCYHFPSSTRTLLSNFAASSQLLSFAHKSTKFRTKTVVFGNQSGNENDSQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSW------
        MGAVS  L +SLR Y FPSST+TLLSNFAASSQLLSF    TKFR+KT+VFG QSGN+NDSQFLDENGVV+DMDGYLNYHSFEYDSVWDTKP+W      
Subjt:  MGAVSLLLPTSLRCYHFPSSTRTLLSNFAASSQLLSFAHKSTKFRTKTVVFGNQSGNENDSQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSW------

Query:  -------LAFHFGAFFFHHFYSRFLIL------FFSNYVNEAYSDMIAERRRKVSDGLEDTFGVKRTQ
               +A  + A       +  L L       F     +AYS+MIAERRRKVSDGLEDTFGVKRTQ
Subjt:  -------LAFHFGAFFFHHFYSRFLIL------FFSNYVNEAYSDMIAERRRKVSDGLEDTFGVKRTQ

A0A1S3BLE6 uncharacterized protein LOC103491324 isoform X1

3.4e-44

66.67

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Query:  MGAVSLLLPTSLRCYHFPSSTRTLLSNFAASSQLLSFAHKSTKFRTKTVVFGNQSGNENDSQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSW------
        MGA+SLLL TSL  YHFPSST+TLLSNFAASSQLLSF  K TKFRTKT+VFG QS  +NDSQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSW      
Subjt:  MGAVSLLLPTSLRCYHFPSSTRTLLSNFAASSQLLSFAHKSTKFRTKTVVFGNQSGNENDSQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSW------

Query:  -------LAFHFGAFFFHHFYSRFLIL------FFSNYVNEAYSDMIAERRRKVSDGLEDTFGVKRTQ
               +A  + A       +  L L       F     +AYS+MIAERRRKVSDGLEDTFGVKRTQ
Subjt:  -------LAFHFGAFFFHHFYSRFLIL------FFSNYVNEAYSDMIAERRRKVSDGLEDTFGVKRTQ

A0A1S4DXK9 uncharacterized protein LOC103491324 isoform X2

3.4e-36

86.17

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Query:  MGAVSLLLPTSLRCYHFPSSTRTLLSNFAASSQLLSFAHKSTKFRTKTVVFGNQSGNENDSQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSW
        MGA+SLLL TSL  YHFPSST+TLLSNFAASSQLLSF  K TKFRTKT+VFG QS  +NDSQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSW
Subjt:  MGAVSLLLPTSLRCYHFPSSTRTLLSNFAASSQLLSFAHKSTKFRTKTVVFGNQSGNENDSQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSW

A0A6J1HI50 uncharacterized protein LOC111463803

1.9e-39

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Query:  MGAVSLLLPTSLRCYHFPSSTRTLLSNFAASSQLLSFAHKSTKFRTKTVVFGNQSGNENDSQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSWL-----
        MG VSL L TSLR +HFP ST+TLLSNFAASSQ +SF  K T+FR K+VVFG QS NE++SQFLDENG V+DMDGYLNYHSFEYDSVWDTKPSW      
Subjt:  MGAVSLLLPTSLRCYHFPSSTRTLLSNFAASSQLLSFAHKSTKFRTKTVVFGNQSGNENDSQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSWL-----

Query:  ----------------AFHFGAFFFHHFYSRFLILFFSNYVNEAYSDMIAERRRKVSDGLEDTFGVKRTQ
                        +    A       S + I  +S    +AY+DMIAERRRKVSDG+EDTFGVKRTQ
Subjt:  ----------------AFHFGAFFFHHFYSRFLILFFSNYVNEAYSDMIAERRRKVSDGLEDTFGVKRTQ

A0A6J1HWP2 uncharacterized protein LOC111466970

9.2e-42

60.34

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Query:  YRKPNSMGAVSLLLPTSLRCYHFPSSTRTLLSNFAASSQLLSFAHKSTKFRTKTVVFGNQSGNENDSQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSW
        + KP SMG VSL L TSLR +HFP ST+TLLSNFAASSQ++SF  K T+FR K+VVFG QS NE++SQFLDENG V+DMDGYLNYHSFEYDSVWDTKPSW
Subjt:  YRKPNSMGAVSLLLPTSLRCYHFPSSTRTLLSNFAASSQLLSFAHKSTKFRTKTVVFGNQSGNENDSQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSW

Query:  -----------LAFHFGAFFFHHFYSRFLIL--------FFSNYVNEAYSDMIAERRRKVSDGLEDTFGVKRTQ
                   L                ++L         F     +AYSDMIAERRRKVSDG+EDTFGVKRTQ
Subjt:  -----------LAFHFGAFFFHHFYSRFLIL--------FFSNYVNEAYSDMIAERRRKVSDGLEDTFGVKRTQ

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G02725.1 unknown protein

1.3e-16

38.18

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Query:  SMGAVSLLLPTSLRCYHFPSSTRTLLSNFAASSQLLSFAHKSTKFRTKTVVFGNQSGNENDSQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSW-----
        SM AVSL          F   T  LLS  +  + L SF  K  +  TK   FG       DS+F+DE GVVDDM+G+L+  S EYDSVWDTKPSW     
Subjt:  SMGAVSLLLPTSLRCYHFPSSTRTLLSNFAASSQLLSFAHKSTKFRTKTVVFGNQSGNENDSQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSW-----

Query:  -----LAFHFGAFFFHH----------FYSRFLILFFSNYVNEAYSDMIAERRRKVSDGLEDTFG
             L+    ++   H              +  +F  +Y  ++YS+MIAERR++V+DG ED +G
Subjt:  -----LAFHFGAFFFHH----------FYSRFLILFFSNYVNEAYSDMIAERRRKVSDGLEDTFG

AT4G02725.2 unknown protein

6.2e-14

47.37

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Query:  SMGAVSLLLPTSLRCYHFPSSTRTLLSNFAASSQLLSFAHKSTKFRTKTVVFGNQSGNENDSQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSW
        SM AVSL          F   T  LLS  +  + L SF  K  +  TK   FG       DS+F+DE GVVDDM+G+L+  S EYDSVWDTKPSW
Subjt:  SMGAVSLLLPTSLRCYHFPSSTRTLLSNFAASSQLLSFAHKSTKFRTKTVVFGNQSGNENDSQFLDENGVVDDMDGYLNYHSFEYDSVWDTKPSW

Sequences

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CDS sequence

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mRNA sequence

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TCAGCTCCATCTCCATGCCTCCATAGTCAGCACACTACTGGGAAGTTGTTATACAGAAAACCCAATTCTATGGGAGCTGTTTCTCTATTACTTCCAACTTCTCTACGATG
CTACCATTTTCCTTCTTCAACACGAACCCTTCTTTCTAATTTCGCTGCTTCCTCACAACTCCTTTCCTTTGCTCACAAATCCACCAAATTCCGCACCAAAACTGTGGTTT
TTGGGAACCAATCAGGCAACGAAAATGATTCTCAGTTTCTAGATGAAAATGGGGTCGTCGATGATATGGATGGATATTTGAATTACCATTCTTTCGAATATGACTCCGTC
TGGGATACAAAGCCTTCTTGGTTAGCTTTCCATTTTGGGGCTTTCTTCTTCCACCATTTTTACTCTCGCTTTCTTATCTTATTTTTCAGCAACTATGTAAATGAGGCTTA
TTCTGACATGATTGCAGAACGAAGAAGAAAGGTTAGTGATGGACTAGAAGACACATTTGGTGTGAAAAGGACACAGTGATTAGTGTAGAGAGTATGTGTATTAACCACCT
GCTTCTCTTCTGCTTCTGTGTCAAGTATCCTGTTTCTTCTTTTCCAGGCTTTTGATGACCTCTCCATGCTGCCTGCTCTGTGATATTTACTAAAAGATTATAAAGCAGTT
GATATGAAGAACATGTAGCTGGGACACCAAGGCAATGCATATTTTTTTTTTTTTTTTGTAAAAGATCATGTTTATTTATACATTGGGTTCGATTCATTTGGGTTCTGATG
TTTTTTGTACTCTACATTTTCATTTTCATAACGTTTGATTCGGCTCCTTGTACTAAAAACAAATCATTTTGATCAATATTTGCAAAAATTTTAATATAATTTTTTTT

Protein sequence

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SAPSPCLHSQHTTGKLLYRKPNSMGAVSLLLPTSLRCYHFPSSTRTLLSNFAASSQLLSFAHKSTKFRTKTVVFGNQSGNENDSQFLDENGVVDDMDGYLNYHSFEYDSV
WDTKPSWLAFHFGAFFFHHFYSRFLILFFSNYVNEAYSDMIAERRRKVSDGLEDTFGVKRTQ

Lsi05G009410 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome