; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi05G009480 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G009480
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionCST complex subunit STN1
Genome locationchr05:16607026..16609434
RNA-Seq ExpressionLsi05G009480
SyntenyLsi05G009480
Gene Ontology termsGO:0006468 - protein phosphorylation (biological process)
GO:0008033 - tRNA processing (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003697 - single-stranded DNA binding (molecular function)
GO:0004674 - protein serine/threonine kinase activity (molecular function)
GO:0004712 - protein serine/threonine/tyrosine kinase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0106310 - protein serine kinase activity (molecular function)
InterPro domainsIPR004365 - OB-fold nucleic acid binding domain, AA-tRNA synthetase-type
IPR012340 - Nucleic acid-binding, OB-fold
IPR040260 - Replication factor A protein-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571457.1 CST complex subunit STN1, partial [Cucurbita argyrosperma subsp. sororia]5.1e-7481.01Show/hide
Query:  MGQKFNSVRT-RELHIRFPMNQRQRLSLNHTHIKLLGFDLNSLTQNSSFSSSSDAVSFSRKGYAVSCTEIVGVVVSRDRKPNKFLKFSVDDGTACVGCIL
        MG++FNS RT  EL  RFPMNQ++  SL HTHIKLLGFDLNSLTQ+SS SSSSDAVSFSR+GYAVSC EIVGVVV RD KPN+FL+FSVDDGT CV CIL
Subjt:  MGQKFNSVRT-RELHIRFPMNQRQRLSLNHTHIKLLGFDLNSLTQNSSFSSSSDAVSFSRKGYAVSCTEIVGVVVSRDRKPNKFLKFSVDDGTACVGCIL

Query:  WLNHLTSPYFASCHQADVRIMGNMATHFASQIRVGIVARVRGRLSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRIGM
        WLNHLTSPYFA  HQ DVRI+GNMATHFA+QIRVGIVARVRG++SSYRGVVQITVSDVVVE+DPNAEILHWLD MR+ +
Subjt:  WLNHLTSPYFASCHQADVRIMGNMATHFASQIRVGIVARVRGRLSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRIGM

XP_022963452.1 LOW QUALITY PROTEIN: CST complex subunit STN1 [Cucurbita moschata]4.5e-7082.63Show/hide
Query:  ELHIRFPMNQRQRLSLNHTHIKLLGFDLNSLTQNSSFSSSSDAVSFSRKGYAVSCTEIVGVVVSRDRKPNKFLKFSVDDGTACVGCILWLNHLTSPYFAS
        EL  RFPMNQ++  SL HTHIKLLGFDLNSLTQ++S SSSSDAVSFSR+GYAVSC EIVGVVV RD KPN+FL+FSVDDGT CV CILWLNHLTSPYFAS
Subjt:  ELHIRFPMNQRQRLSLNHTHIKLLGFDLNSLTQNSSFSSSSDAVSFSRKGYAVSCTEIVGVVVSRDRKPNKFLKFSVDDGTACVGCILWLNHLTSPYFAS

Query:  CHQADVRIMGNMATHFASQIRVGIVARVRGRLSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRIGM
         HQ DVRI+GNMATHFA+QIRVGIVARVRGR+SSYRGVVQ+TVSDVVVE+DPNAEILHWLD MR+ +
Subjt:  CHQADVRIMGNMATHFASQIRVGIVARVRGRLSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRIGM

XP_022967373.1 CST complex subunit STN1 [Cucurbita maxima]1.3e-7281.92Show/hide
Query:  MGQKFNSVRTRELHIRFPMNQRQRLSLNHTHIKLLGFDLNSLTQNSSFSSSSDAVSFSRKGYAVSCTEIVGVVVSRDRKPNKFLKFSVDDGTACVGCILW
        MGQ  NS RT E   RFPMNQ++  SL HTHIKLLGFDLNSLTQ+SS SSSSDAVSFSR+G+AVSC EIVGVVVSRD KPN+FL+FSVDDGT CV CILW
Subjt:  MGQKFNSVRTRELHIRFPMNQRQRLSLNHTHIKLLGFDLNSLTQNSSFSSSSDAVSFSRKGYAVSCTEIVGVVVSRDRKPNKFLKFSVDDGTACVGCILW

Query:  LNHLTSPYFASCHQADVRIMGNMATHFASQIRVGIVARVRGRLSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRIG
        LNHLTSPYFAS HQ DVRI+GNMATHFA+QIRVGIVARVRG++SSYRGVVQITVSDVVVE+DPNAEILHWLD M  G
Subjt:  LNHLTSPYFASCHQADVRIMGNMATHFASQIRVGIVARVRGRLSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRIG

XP_038887265.1 CST complex subunit STN1 isoform X1 [Benincasa hispida]8.7e-8281.22Show/hide
Query:  MGQKFNSVRTRELHIRFPMNQRQRLSLNHTHIKLLGFDLNSLTQNSSFSSSSDAVSFSRKGYAVSCTEIVGVVVSRDRKPNKFLKFSVDDGTACVGCILW
        MGQKFNS R R+LHIRFPMNQRQRLSL HTHIKLLGFD+NSL Q SS SSSSDAVSFSR GYAVSC+EIVGVVVS D KPN+FLKFSVDDGTACVGCILW
Subjt:  MGQKFNSVRTRELHIRFPMNQRQRLSLNHTHIKLLGFDLNSLTQNSSFSSSSDAVSFSRKGYAVSCTEIVGVVVSRDRKPNKFLKFSVDDGTACVGCILW

Query:  LNHLTSPYFASCHQADVRIMGNMATHFASQIRVGIVARVRGRLSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRIGMSNESNHSQNLISFPRTILV
        LNHLTSPYFAS HQ DVRIMGN+ATHFA+QIRVGIVARVRG+LSSYRGVVQITVSDVVVE+DPNAEILHWLDSMR  ++     +Q       T LV
Subjt:  LNHLTSPYFASCHQADVRIMGNMATHFASQIRVGIVARVRGRLSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRIGMSNESNHSQNLISFPRTILV

XP_038887266.1 CST complex subunit STN1 isoform X2 [Benincasa hispida]1.6e-8089.08Show/hide
Query:  MGQKFNSVRTRELHIRFPMNQRQRLSLNHTHIKLLGFDLNSLTQNSSFSSSSDAVSFSRKGYAVSCTEIVGVVVSRDRKPNKFLKFSVDDGTACVGCILW
        MGQKFNS R R+LHIRFPMNQRQRLSL HTHIKLLGFD+NSL Q SS SSSSDAVSFSR GYAVSC+EIVGVVVS D KPN+FLKFSVDDGTACVGCILW
Subjt:  MGQKFNSVRTRELHIRFPMNQRQRLSLNHTHIKLLGFDLNSLTQNSSFSSSSDAVSFSRKGYAVSCTEIVGVVVSRDRKPNKFLKFSVDDGTACVGCILW

Query:  LNHLTSPYFASCHQADVRIMGNMATHFASQIRVGIVARVRGRLSSYRGVVQITVSDVVVEDDPNAEILHWLDSM
        LNHLTSPYFAS HQ DVRIMGN+ATHFA+QIRVGIVARVRG+LSSYRGVVQITVSDVVVE+DPNAEILHWLDSM
Subjt:  LNHLTSPYFASCHQADVRIMGNMATHFASQIRVGIVARVRGRLSSYRGVVQITVSDVVVEDDPNAEILHWLDSM

TrEMBL top hitse value%identityAlignment
A0A0A0LNV0 OB domain-containing protein8.0e-6581.48Show/hide
Query:  MNQRQR--LSLNHTHIKLLGFDLNSLTQNSSFSSSSDAVSFSRKGYAVSCTEIVGVVVSRDRKPNKFLKFSVDDGTACVGCILWLNHLTSPYFASCHQAD
        MNQR+R   SL  TH+KLL FDLNSL Q    +SSSD+VSFSRKGYAVSCTEIVGVVV RD KPN+FLKFSVDDGTACVGCILWLNHLTS YFAS H  D
Subjt:  MNQRQR--LSLNHTHIKLLGFDLNSLTQNSSFSSSSDAVSFSRKGYAVSCTEIVGVVVSRDRKPNKFLKFSVDDGTACVGCILWLNHLTSPYFASCHQAD

Query:  VRIMGNMATHFASQIRVGIVARVRGRLSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRIGM
        VRI+G+MATHFA+QIRVGIV RVRG+LSSYRG+VQITVSDVVVEDDPNAEILHWLDSMR+ M
Subjt:  VRIMGNMATHFASQIRVGIVARVRGRLSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRIGM

A0A1S3BLT5 CST complex subunit STN16.3e-7082.84Show/hide
Query:  ELHIRFPMNQRQR--LSLNHTHIKLLGFDLNSLTQNSSFSSSSDAVSFSRKGYAVSCTEIVGVVVSRDRKPNKFLKFSVDDGTACVGCILWLNHLTSPYF
        +LHIRFPMNQRQR   SL  TH+KLLGFDLNSL QN    SSSD+VSFSRKGYAVSCTEIVGVVV RD KPN+FLKFSVDDGTACVGCILWLNHLTS YF
Subjt:  ELHIRFPMNQRQR--LSLNHTHIKLLGFDLNSLTQNSSFSSSSDAVSFSRKGYAVSCTEIVGVVVSRDRKPNKFLKFSVDDGTACVGCILWLNHLTSPYF

Query:  ASCHQADVRIMGNMATHFASQIRVGIVARVRGRLSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRIGM
        AS H  DVRI+ +MATHFA+QIRVGIV RVRG+LSSYRG+VQITVSDVVVEDDPNAEILHWLDSMR+ M
Subjt:  ASCHQADVRIMGNMATHFASQIRVGIVARVRGRLSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRIGM

A0A5D3E3H2 CST complex subunit STN17.2e-6682.72Show/hide
Query:  MNQRQR--LSLNHTHIKLLGFDLNSLTQNSSFSSSSDAVSFSRKGYAVSCTEIVGVVVSRDRKPNKFLKFSVDDGTACVGCILWLNHLTSPYFASCHQAD
        MNQRQR   SL  TH+KLLGFDLNSL QN    SSSD+VSFSRKGYAVSCTEIVGVVV RD KPN+FLKFSVDDGTACVGCILWLNHLTS YFAS H  D
Subjt:  MNQRQR--LSLNHTHIKLLGFDLNSLTQNSSFSSSSDAVSFSRKGYAVSCTEIVGVVVSRDRKPNKFLKFSVDDGTACVGCILWLNHLTSPYFASCHQAD

Query:  VRIMGNMATHFASQIRVGIVARVRGRLSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRIGM
        VRI+ +MATHFA+QIRVGIV RVRG+LSSYRG+VQITVSDVVVEDDPNAEILHWLDSMR+ M
Subjt:  VRIMGNMATHFASQIRVGIVARVRGRLSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRIGM

A0A6J1HFA9 LOW QUALITY PROTEIN: CST complex subunit STN12.2e-7082.63Show/hide
Query:  ELHIRFPMNQRQRLSLNHTHIKLLGFDLNSLTQNSSFSSSSDAVSFSRKGYAVSCTEIVGVVVSRDRKPNKFLKFSVDDGTACVGCILWLNHLTSPYFAS
        EL  RFPMNQ++  SL HTHIKLLGFDLNSLTQ++S SSSSDAVSFSR+GYAVSC EIVGVVV RD KPN+FL+FSVDDGT CV CILWLNHLTSPYFAS
Subjt:  ELHIRFPMNQRQRLSLNHTHIKLLGFDLNSLTQNSSFSSSSDAVSFSRKGYAVSCTEIVGVVVSRDRKPNKFLKFSVDDGTACVGCILWLNHLTSPYFAS

Query:  CHQADVRIMGNMATHFASQIRVGIVARVRGRLSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRIGM
         HQ DVRI+GNMATHFA+QIRVGIVARVRGR+SSYRGVVQ+TVSDVVVE+DPNAEILHWLD MR+ +
Subjt:  CHQADVRIMGNMATHFASQIRVGIVARVRGRLSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRIGM

A0A6J1HUX0 CST complex subunit STN16.1e-7381.92Show/hide
Query:  MGQKFNSVRTRELHIRFPMNQRQRLSLNHTHIKLLGFDLNSLTQNSSFSSSSDAVSFSRKGYAVSCTEIVGVVVSRDRKPNKFLKFSVDDGTACVGCILW
        MGQ  NS RT E   RFPMNQ++  SL HTHIKLLGFDLNSLTQ+SS SSSSDAVSFSR+G+AVSC EIVGVVVSRD KPN+FL+FSVDDGT CV CILW
Subjt:  MGQKFNSVRTRELHIRFPMNQRQRLSLNHTHIKLLGFDLNSLTQNSSFSSSSDAVSFSRKGYAVSCTEIVGVVVSRDRKPNKFLKFSVDDGTACVGCILW

Query:  LNHLTSPYFASCHQADVRIMGNMATHFASQIRVGIVARVRGRLSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRIG
        LNHLTSPYFAS HQ DVRI+GNMATHFA+QIRVGIVARVRG++SSYRGVVQITVSDVVVE+DPNAEILHWLD M  G
Subjt:  LNHLTSPYFASCHQADVRIMGNMATHFASQIRVGIVARVRGRLSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRIG

SwissProt top hitse value%identityAlignment
Q9LMK5 CST complex subunit STN14.4e-3652.6Show/hide
Query:  SLNHTHIKLLGFDLNSLTQNSSFSSSSDAVSFSRKGYAVSCTEIVGVVVSRDRKPNKFLKFSVDDGTACVGCILWLNHLTSPYFASCHQADVRIMGNMAT
        SL  TH KL+  D+  LTQ+ + S+S   +     G  VS  EIVG +VSRD  P KFLKF VDDGT CV C++WLN LTS YF+    A + ++ + A 
Subjt:  SLNHTHIKLLGFDLNSLTQNSSFSSSSDAVSFSRKGYAVSCTEIVGVVVSRDRKPNKFLKFSVDDGTACVGCILWLNHLTSPYFASCHQADVRIMGNMAT

Query:  HFASQIRVGIVARVRGRLSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRIGMS
          A+QIR+G VARVRGR+ SYRGV+QIT +  V E DPNAEILHWL+ +++G S
Subjt:  HFASQIRVGIVARVRGRLSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRIGMS

Q9ZQ19 Replication protein A 32 kDa subunit A4.4e-0422.7Show/hide
Query:  FSSSSDAVSFSRKGYAVSCTEIVGVVVSRDRKPNKFLKFSVDDGTACVGCILWLNHLTSPYFASCHQADVRIMGNMATHFASQIRVGIVARVRGRLSSYR
        F SS +       G +++   +VG+V  +D      ++F++DDGT  + C  W++             D R M          +R G   R+ G L +++
Subjt:  FSSSSDAVSFSRKGYAVSCTEIVGVVVSRDRKPNKFLKFSVDDGTACVGCILWLNHLTSPYFASCHQADVRIMGNMATHFASQIRVGIVARVRGRLSSYR

Query:  GVVQITVSDVVVEDDPNAEILHWLDSMRIGMSNESNHSQNL
        G  Q+ V  V    D N    H+++ +     N  +  Q +
Subjt:  GVVQITVSDVVVEDDPNAEILHWLDSMRIGMSNESNHSQNL

Arabidopsis top hitse value%identityAlignment
AT1G07130.1 Nucleic acid-binding, OB-fold-like protein3.1e-3752.6Show/hide
Query:  SLNHTHIKLLGFDLNSLTQNSSFSSSSDAVSFSRKGYAVSCTEIVGVVVSRDRKPNKFLKFSVDDGTACVGCILWLNHLTSPYFASCHQADVRIMGNMAT
        SL  TH KL+  D+  LTQ+ + S+S   +     G  VS  EIVG +VSRD  P KFLKF VDDGT CV C++WLN LTS YF+    A + ++ + A 
Subjt:  SLNHTHIKLLGFDLNSLTQNSSFSSSSDAVSFSRKGYAVSCTEIVGVVVSRDRKPNKFLKFSVDDGTACVGCILWLNHLTSPYFASCHQADVRIMGNMAT

Query:  HFASQIRVGIVARVRGRLSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRIGMS
          A+QIR+G VARVRGR+ SYRGV+QIT +  V E DPNAEILHWL+ +++G S
Subjt:  HFASQIRVGIVARVRGRLSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRIGMS

AT2G24490.1 replicon protein A23.2e-0522.7Show/hide
Query:  FSSSSDAVSFSRKGYAVSCTEIVGVVVSRDRKPNKFLKFSVDDGTACVGCILWLNHLTSPYFASCHQADVRIMGNMATHFASQIRVGIVARVRGRLSSYR
        F SS +       G +++   +VG+V  +D      ++F++DDGT  + C  W++             D R M          +R G   R+ G L +++
Subjt:  FSSSSDAVSFSRKGYAVSCTEIVGVVVSRDRKPNKFLKFSVDDGTACVGCILWLNHLTSPYFASCHQADVRIMGNMATHFASQIRVGIVARVRGRLSSYR

Query:  GVVQITVSDVVVEDDPNAEILHWLDSMRIGMSNESNHSQNL
        G  Q+ V  V    D N    H+++ +     N  +  Q +
Subjt:  GVVQITVSDVVVEDDPNAEILHWLDSMRIGMSNESNHSQNL

AT2G24490.2 replicon protein A23.2e-0522.7Show/hide
Query:  FSSSSDAVSFSRKGYAVSCTEIVGVVVSRDRKPNKFLKFSVDDGTACVGCILWLNHLTSPYFASCHQADVRIMGNMATHFASQIRVGIVARVRGRLSSYR
        F SS +       G +++   +VG+V  +D      ++F++DDGT  + C  W++             D R M          +R G   R+ G L +++
Subjt:  FSSSSDAVSFSRKGYAVSCTEIVGVVVSRDRKPNKFLKFSVDDGTACVGCILWLNHLTSPYFASCHQADVRIMGNMATHFASQIRVGIVARVRGRLSSYR

Query:  GVVQITVSDVVVEDDPNAEILHWLDSMRIGMSNESNHSQNL
        G  Q+ V  V    D N    H+++ +     N  +  Q +
Subjt:  GVVQITVSDVVVEDDPNAEILHWLDSMRIGMSNESNHSQNL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCCAGAAATTTAACTCAGTCAGAACCAGAGAATTACACATTAGGTTTCCGATGAACCAACGGCAACGCCTCTCCCTCAACCACACCCACATCAAGCTTCTTGGTTT
CGACCTTAATTCCCTCACCCAAAATTCCTCTTTTTCTTCTTCTTCTGATGCAGTTTCTTTCTCTCGGAAAGGCTATGCCGTTTCCTGTACAGAGATCGTCGGCGTTGTGG
TCTCTCGTGACCGCAAACCTAACAAGTTTCTCAAATTTTCCGTCGACGATGGTACCGCCTGTGTCGGTTGCATCCTGTGGCTAAATCATCTCACATCGCCTTATTTTGCT
TCCTGCCATCAGGCAGATGTTCGAATAATGGGAAATATGGCGACCCATTTCGCATCCCAAATTAGGGTTGGGATTGTTGCTAGGGTTCGGGGGAGATTGAGCAGCTATAG
GGGAGTGGTGCAGATTACAGTGTCAGATGTTGTGGTTGAGGACGACCCAAATGCTGAAATTCTGCATTGGTTGGATTCTATGAGAATAGGGATGTCAAACGAATCCAACC
ACTCTCAAAACTTGATCAGTTTTCCTCGAACTATTTTGGTTCAGGCTATAGCTCAGGTGGCTATAAAACACAGATCAGGTCGAGCTGGCTCTAACCTTCTTGATGGCTAC
GATGAAAAACAAAGAAGCCGGTGGACAAATTCCTCATGA
mRNA sequenceShow/hide mRNA sequence
CATGAAGTTTAATTGGGCTCTCATGGATCTAAAAAAAGCCCAATAGAAGCCCAATGGGCCAGAAATTTAACTCAGTCAGAACCAGAGAATTACACATTAGGTTTCCGATG
AACCAACGGCAACGCCTCTCCCTCAACCACACCCACATCAAGCTTCTTGGTTTCGACCTTAATTCCCTCACCCAAAATTCCTCTTTTTCTTCTTCTTCTGATGCAGTTTC
TTTCTCTCGGAAAGGCTATGCCGTTTCCTGTACAGAGATCGTCGGCGTTGTGGTCTCTCGTGACCGCAAACCTAACAAGTTTCTCAAATTTTCCGTCGACGATGGTACCG
CCTGTGTCGGTTGCATCCTGTGGCTAAATCATCTCACATCGCCTTATTTTGCTTCCTGCCATCAGGCAGATGTTCGAATAATGGGAAATATGGCGACCCATTTCGCATCC
CAAATTAGGGTTGGGATTGTTGCTAGGGTTCGGGGGAGATTGAGCAGCTATAGGGGAGTGGTGCAGATTACAGTGTCAGATGTTGTGGTTGAGGACGACCCAAATGCTGA
AATTCTGCATTGGTTGGATTCTATGAGAATAGGGATGTCAAACGAATCCAACCACTCTCAAAACTTGATCAGTTTTCCTCGAACTATTTTGGTTCAGGCTATAGCTCAGG
TGGCTATAAAACACAGATCAGGTCGAGCTGGCTCTAACCTTCTTGATGGCTACGATGAAAAACAAAGAAGCCGGTGGACAAATTCCTCATGATTTGATGGGCTACAATGG
AGAAAAACAAGGGCTATCAATTTATCTTCGTTTTTAATTAGGCCTATTCCTATTAGAAAATTAAATAAATAAAACAAATGCCTACTCTCAGTATTTCCCCCCCTAATTTT
AATTAAATAACACTTGATTTCATGTGTGTAACACCGAGATCGTTGAAGTAGAATTTTTATTGTCAATTCTAGAATATTTTGGTGGACAAGACATTAACTAACATTTGATA
ATATTATATATAAATATAATCGATAGTTTGATTTT
Protein sequenceShow/hide protein sequence
MGQKFNSVRTRELHIRFPMNQRQRLSLNHTHIKLLGFDLNSLTQNSSFSSSSDAVSFSRKGYAVSCTEIVGVVVSRDRKPNKFLKFSVDDGTACVGCILWLNHLTSPYFA
SCHQADVRIMGNMATHFASQIRVGIVARVRGRLSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRIGMSNESNHSQNLISFPRTILVQAIAQVAIKHRSGRAGSNLLDGY
DEKQRSRWTNSS