CuGenDBv2

Gene ID	Lsi05G009610
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	zinc finger CCCH domain-containing protein 6-like
Genome location	chr05:16766505..16768279
RNA-Seq Expression	Lsi05G009610
Synteny	Lsi05G009610
Gene Ontology terms	GO:0003677 - DNA binding (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004152656.1 zinc finger CCCH domain-containing protein 6 [Cucumis sativus]

3.3e-31

94.44

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Query:  VRLFLSEDCPSQVGLGAQDHLQAKASWLLHST--GPGSDDTLPPGFEVAHPENQWQIKLSQIPVNQWRCPPK
        VRLF SEDCPSQVGLGAQDHLQAKASWLLHST  G GSDDTLPPGFEVAHPENQWQIKLSQIPVNQWRCPPK
Subjt:  VRLFLSEDCPSQVGLGAQDHLQAKASWLLHST--GPGSDDTLPPGFEVAHPENQWQIKLSQIPVNQWRCPPK

XP_022997031.1 zinc finger CCCH domain-containing protein 6-like isoform X1 [Cucurbita maxima]

4.3e-31

95.71

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Query:  VRLFLSEDCPSQVGLGAQDHLQAKASWLLHSTGPGSDDTLPPGFEVAHPENQWQIKLSQIPVNQWRCPPK
        VRLFLSEDCPSQVGLGAQDHLQAKASWLLHSTG GSDDTLPPGFEVAH ENQ QIKLSQIPVNQWRCPPK
Subjt:  VRLFLSEDCPSQVGLGAQDHLQAKASWLLHSTGPGSDDTLPPGFEVAHPENQWQIKLSQIPVNQWRCPPK

XP_022997032.1 zinc finger CCCH domain-containing protein 6-like isoform X2 [Cucurbita maxima]

4.3e-31

95.71

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Query:  VRLFLSEDCPSQVGLGAQDHLQAKASWLLHSTGPGSDDTLPPGFEVAHPENQWQIKLSQIPVNQWRCPPK
        VRLFLSEDCPSQVGLGAQDHLQAKASWLLHSTG GSDDTLPPGFEVAH ENQ QIKLSQIPVNQWRCPPK
Subjt:  VRLFLSEDCPSQVGLGAQDHLQAKASWLLHSTGPGSDDTLPPGFEVAHPENQWQIKLSQIPVNQWRCPPK

XP_023522523.1 zinc finger CCCH domain-containing protein 6-like [Cucurbita pepo subsp. pepo]

4.3e-31

95.71

Show/hide

Query:  VRLFLSEDCPSQVGLGAQDHLQAKASWLLHSTGPGSDDTLPPGFEVAHPENQWQIKLSQIPVNQWRCPPK
        VRLFLSEDCPSQVGLGAQDHLQAKASWLLHSTG GSDDTLPPGFEVAH ENQ QIKLSQIPVNQWRCPPK
Subjt:  VRLFLSEDCPSQVGLGAQDHLQAKASWLLHSTGPGSDDTLPPGFEVAHPENQWQIKLSQIPVNQWRCPPK

XP_038884901.1 zinc finger CCCH domain-containing protein 6 [Benincasa hispida]

1.2e-33

98.57

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Query:  VRLFLSEDCPSQVGLGAQDHLQAKASWLLHSTGPGSDDTLPPGFEVAHPENQWQIKLSQIPVNQWRCPPK
        VRLFLSEDCPSQVGLGAQDHLQAKASWLLHSTG GSDDTLPPGFEVAHPENQWQIKLSQIPVNQWRCPPK
Subjt:  VRLFLSEDCPSQVGLGAQDHLQAKASWLLHSTGPGSDDTLPPGFEVAHPENQWQIKLSQIPVNQWRCPPK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LL66 C3H1-type domain-containing protein

1.6e-31

94.44

Show/hide

Query:  VRLFLSEDCPSQVGLGAQDHLQAKASWLLHST--GPGSDDTLPPGFEVAHPENQWQIKLSQIPVNQWRCPPK
        VRLF SEDCPSQVGLGAQDHLQAKASWLLHST  G GSDDTLPPGFEVAHPENQWQIKLSQIPVNQWRCPPK
Subjt:  VRLFLSEDCPSQVGLGAQDHLQAKASWLLHST--GPGSDDTLPPGFEVAHPENQWQIKLSQIPVNQWRCPPK

A0A5A7VH57 Zinc finger CCCH domain-containing protein 6

3.0e-30

93.06

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Query:  VRLFLSEDCPSQVGLGAQDHLQAKASWLLHSTGP--GSDDTLPPGFEVAHPENQWQIKLSQIPVNQWRCPPK
        VRLF SEDCPSQVGLGAQDHLQAKASWLLHSTG   GSDDTLPPGFEVAHPENQ QIKLSQIPVNQWRCPPK
Subjt:  VRLFLSEDCPSQVGLGAQDHLQAKASWLLHSTGP--GSDDTLPPGFEVAHPENQWQIKLSQIPVNQWRCPPK

A0A6J1HG26 zinc finger CCCH domain-containing protein 6-like

2.1e-31

95.71

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Query:  VRLFLSEDCPSQVGLGAQDHLQAKASWLLHSTGPGSDDTLPPGFEVAHPENQWQIKLSQIPVNQWRCPPK
        VRLFLSEDCPSQVGLGAQDHLQAKASWLLHSTG GSDDTLPPGFEVAH ENQ QIKLSQIPVNQWRCPPK
Subjt:  VRLFLSEDCPSQVGLGAQDHLQAKASWLLHSTGPGSDDTLPPGFEVAHPENQWQIKLSQIPVNQWRCPPK

A0A6J1K3Q0 zinc finger CCCH domain-containing protein 6-like isoform X2

2.1e-31

95.71

Show/hide

Query:  VRLFLSEDCPSQVGLGAQDHLQAKASWLLHSTGPGSDDTLPPGFEVAHPENQWQIKLSQIPVNQWRCPPK
        VRLFLSEDCPSQVGLGAQDHLQAKASWLLHSTG GSDDTLPPGFEVAH ENQ QIKLSQIPVNQWRCPPK
Subjt:  VRLFLSEDCPSQVGLGAQDHLQAKASWLLHSTGPGSDDTLPPGFEVAHPENQWQIKLSQIPVNQWRCPPK

A0A6J1K6C9 zinc finger CCCH domain-containing protein 6-like isoform X1

2.1e-31

95.71

Show/hide

Query:  VRLFLSEDCPSQVGLGAQDHLQAKASWLLHSTGPGSDDTLPPGFEVAHPENQWQIKLSQIPVNQWRCPPK
        VRLFLSEDCPSQVGLGAQDHLQAKASWLLHSTG GSDDTLPPGFEVAH ENQ QIKLSQIPVNQWRCPPK
Subjt:  VRLFLSEDCPSQVGLGAQDHLQAKASWLLHSTGPGSDDTLPPGFEVAHPENQWQIKLSQIPVNQWRCPPK

SwissProt top hits

e value

%identity

Alignment

Q56XU4 Zinc finger CCCH domain-containing protein 6

4.2e-13

56.72

Show/hide

Query:  VRLFLSEDCPSQVGLGAQDHLQAKASWLLHSTGPGSDDTLPPGFEVAHPENQWQIKLSQIPVNQWRC
        VRLF+SED PSQVG  +QDHLQAK+    H     SDD LPPGF      N+ QIKLS IP+ +W+C
Subjt:  VRLFLSEDCPSQVGLGAQDHLQAKASWLLHSTGPGSDDTLPPGFEVAHPENQWQIKLSQIPVNQWRC

Q7XM16 Zinc finger CCCH domain-containing protein 30

8.4e-22

66.67

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Query:  VRLFLSEDCPSQVGLGAQDHLQAKASWLLHSTGPGSDDTLPPGFEVAHPENQWQIKLSQIPVNQWRCPP
        VRLFLSED PSQ GL  QD+LQAK SWLLH+ GP SDD+LPPGFE   P N  +I +SQIP+ +W+CPP
Subjt:  VRLFLSEDCPSQVGLGAQDHLQAKASWLLHSTGPGSDDTLPPGFEVAHPENQWQIKLSQIPVNQWRCPP

Arabidopsis top hits

e value

%identity

Alignment

AT1G19860.1 Zinc finger C-x8-C-x5-C-x3-H type family protein

3.0e-14

56.72

Show/hide

Query:  VRLFLSEDCPSQVGLGAQDHLQAKASWLLHSTGPGSDDTLPPGFEVAHPENQWQIKLSQIPVNQWRC
        VRLF+SED PSQVG  +QDHLQAK+    H     SDD LPPGF      N+ QIKLS IP+ +W+C
Subjt:  VRLFLSEDCPSQVGLGAQDHLQAKASWLLHSTGPGSDDTLPPGFEVAHPENQWQIKLSQIPVNQWRC

Sequences

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CDS sequence

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ATGTCTTTTGTTAGGTTGTTCTTGTCTGAGGATTGTCCTTCCCAAGTGGGATTGGGTGCTCAAGATCACCTTCAGGCAAAGGCATCGTGGCTCTTGCATTCAACTGGTCC
AGGTTCTGATGACACCTTGCCTCCTGGATTTGAAGTAGCTCATCCAGAGAATCAGTGGCAGATTAAGCTCTCACAAATTCCTGTAAATCAATGGAGATGTCCACCTAAGC
GCAATGAAGCAAAACAAAAGATAAATCATCCAGACATACTAGCCACAAACCAAATGAAGGAGCAACCAAAAGATAGTCACAAGGACGCCAATTGCTTGCTAAGAAAATAA

mRNA sequence

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Protein sequence

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MSFVRLFLSEDCPSQVGLGAQDHLQAKASWLLHSTGPGSDDTLPPGFEVAHPENQWQIKLSQIPVNQWRCPPKRNEAKQKINHPDILATNQMKEQPKDSHKDANCLLRK

Lsi05G009610 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome