CuGenDBv2

Gene ID	Lsi05G009780
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	iron-sulfur protein NUBPL
Genome location	chr05:17093669..17096777
RNA-Seq Expression	Lsi05G009780
Synteny	Lsi05G009780
Gene Ontology terms	GO:0016226 - iron-sulfur cluster assembly (biological process) GO:0005524 - ATP binding (molecular function) GO:0051536 - iron-sulfur cluster binding (molecular function)
InterPro domains	IPR027417 - P-loop containing nucleoside triphosphate hydrolase IPR033756 - Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 IPR044304 - Iron-sulfur protein NUBPL-like

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004140079.1 iron-sulfur protein NUBPL isoform X1 [Cucumis sativus]

9.3e-29

61.6

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Query:  MKRLSWFFSSKPRLGGVRGYSSSKKELQIHGIKHAIAIASGKGGVGKSTTA-----------------------------------------DRNMVPVE
        MKRLSWFFS + RLG VRGYS+S KELQIHGIKHAIAIASGKGGVGKSTTA                                         DR MVPVE
Subjt:  MKRLSWFFSSKPRLGGVRGYSSSKKELQIHGIKHAIAIASGKGGVGKSTTA-----------------------------------------DRNMVPVE

Query:  NYGVKCMSMGLLVENNAALVWRGPM
        NYGVKCMSMGLLVENNAALVWRGPM
Subjt:  NYGVKCMSMGLLVENNAALVWRGPM

XP_022146020.1 iron-sulfur protein NUBPL [Momordica charantia]

9.3e-29

60.8

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Query:  MKRLSWFFSSKPRLGGVRGYSSSKKELQIHGIKHAIAIASGKGGVGKSTTA-----------------------------------------DRNMVPVE
        MKR SWFFS+K RLGGVRGYS++KKELQI GIKHAIAIASGKGGVGKSTTA                                         DR M+PVE
Subjt:  MKRLSWFFSSKPRLGGVRGYSSSKKELQIHGIKHAIAIASGKGGVGKSTTA-----------------------------------------DRNMVPVE

Query:  NYGVKCMSMGLLVENNAALVWRGPM
        NYGVKCMSMGLLVENNAALVWRGPM
Subjt:  NYGVKCMSMGLLVENNAALVWRGPM

XP_031744071.1 iron-sulfur protein NUBPL isoform X2 [Cucumis sativus]

9.3e-29

61.6

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Query:  MKRLSWFFSSKPRLGGVRGYSSSKKELQIHGIKHAIAIASGKGGVGKSTTA-----------------------------------------DRNMVPVE
        MKRLSWFFS + RLG VRGYS+S KELQIHGIKHAIAIASGKGGVGKSTTA                                         DR MVPVE
Subjt:  MKRLSWFFSSKPRLGGVRGYSSSKKELQIHGIKHAIAIASGKGGVGKSTTA-----------------------------------------DRNMVPVE

Query:  NYGVKCMSMGLLVENNAALVWRGPM
        NYGVKCMSMGLLVENNAALVWRGPM
Subjt:  NYGVKCMSMGLLVENNAALVWRGPM

XP_038888219.1 iron-sulfur protein NUBPL isoform X1 [Benincasa hispida]

2.4e-37

62.99

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Query:  RSSPTIRSEELELSVKKFFFTGLSTTKKFMKRLSWFFSSKPRLGGVRGYSSSKKELQIHGIKHAIAIASGKGGVGKSTTA--------------------
        RSSPTIRSEE ELS KKFF         FMKRLSWFFS + RLGGVRGYS+SKKELQIHGIKHAIAIASGKGGVGKSTTA                    
Subjt:  RSSPTIRSEELELSVKKFFFTGLSTTKKFMKRLSWFFSSKPRLGGVRGYSSSKKELQIHGIKHAIAIASGKGGVGKSTTA--------------------

Query:  ---------------------DRNMVPVENYGVKCMSMGLLVENNAALVWRGPM
                             DR MVPVENYGVKCMSMGLLVENNAALVWRGPM
Subjt:  ---------------------DRNMVPVENYGVKCMSMGLLVENNAALVWRGPM

XP_038888221.1 iron-sulfur protein NUBPL isoform X2 [Benincasa hispida]

2.4e-37

62.99

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Query:  RSSPTIRSEELELSVKKFFFTGLSTTKKFMKRLSWFFSSKPRLGGVRGYSSSKKELQIHGIKHAIAIASGKGGVGKSTTA--------------------
        RSSPTIRSEE ELS KKFF         FMKRLSWFFS + RLGGVRGYS+SKKELQIHGIKHAIAIASGKGGVGKSTTA                    
Subjt:  RSSPTIRSEELELSVKKFFFTGLSTTKKFMKRLSWFFSSKPRLGGVRGYSSSKKELQIHGIKHAIAIASGKGGVGKSTTA--------------------

Query:  ---------------------DRNMVPVENYGVKCMSMGLLVENNAALVWRGPM
                             DR MVPVENYGVKCMSMGLLVENNAALVWRGPM
Subjt:  ---------------------DRNMVPVENYGVKCMSMGLLVENNAALVWRGPM

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KJA9 Uncharacterized protein

4.5e-29

61.6

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Query:  MKRLSWFFSSKPRLGGVRGYSSSKKELQIHGIKHAIAIASGKGGVGKSTTA-----------------------------------------DRNMVPVE
        MKRLSWFFS + RLG VRGYS+S KELQIHGIKHAIAIASGKGGVGKSTTA                                         DR MVPVE
Subjt:  MKRLSWFFSSKPRLGGVRGYSSSKKELQIHGIKHAIAIASGKGGVGKSTTA-----------------------------------------DRNMVPVE

Query:  NYGVKCMSMGLLVENNAALVWRGPM
        NYGVKCMSMGLLVENNAALVWRGPM
Subjt:  NYGVKCMSMGLLVENNAALVWRGPM

A0A1S3BLW5 iron-sulfur protein NUBPL

1.7e-28

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Query:  MKRLSWFFSSKPRLGGVRGYSSSKKELQIHGIKHAIAIASGKGGVGKSTTA-----------------------------------------DRNMVPVE
        MKRLSW FS + +LG VRGYS+S+KELQIHGIKHAIAIASGKGGVGKSTTA                                         DR MVPVE
Subjt:  MKRLSWFFSSKPRLGGVRGYSSSKKELQIHGIKHAIAIASGKGGVGKSTTA-----------------------------------------DRNMVPVE

Query:  NYGVKCMSMGLLVENNAALVWRGPM
        NYGVKCMSMGLLVENNAALVWRGPM
Subjt:  NYGVKCMSMGLLVENNAALVWRGPM

A0A5A7UNF7 Iron-sulfur protein NUBPL

1.7e-28

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Query:  MKRLSWFFSSKPRLGGVRGYSSSKKELQIHGIKHAIAIASGKGGVGKSTTA-----------------------------------------DRNMVPVE
        MKRLSW FS + +LG VRGYS+S+KELQIHGIKHAIAIASGKGGVGKSTTA                                         DR MVPVE
Subjt:  MKRLSWFFSSKPRLGGVRGYSSSKKELQIHGIKHAIAIASGKGGVGKSTTA-----------------------------------------DRNMVPVE

Query:  NYGVKCMSMGLLVENNAALVWRGPM
        NYGVKCMSMGLLVENNAALVWRGPM
Subjt:  NYGVKCMSMGLLVENNAALVWRGPM

A0A6J1CW38 iron-sulfur protein NUBPL

4.5e-29

60.8

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Query:  MKRLSWFFSSKPRLGGVRGYSSSKKELQIHGIKHAIAIASGKGGVGKSTTA-----------------------------------------DRNMVPVE
        MKR SWFFS+K RLGGVRGYS++KKELQI GIKHAIAIASGKGGVGKSTTA                                         DR M+PVE
Subjt:  MKRLSWFFSSKPRLGGVRGYSSSKKELQIHGIKHAIAIASGKGGVGKSTTA-----------------------------------------DRNMVPVE

Query:  NYGVKCMSMGLLVENNAALVWRGPM
        NYGVKCMSMGLLVENNAALVWRGPM
Subjt:  NYGVKCMSMGLLVENNAALVWRGPM

A0A6J1EYV6 iron-sulfur protein NUBPL isoform X2

5.0e-28

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Query:  MKRLSWFFSSKPRLGGVRGYSSSKKELQIHGIKHAIAIASGKGGVGKSTTA-----------------------------------------DRNMVPVE
        MKRLSWFFS K R+GGVRGYS+SKKEL+I GIKH IAIASGKGGVGKSTTA                                         DR MVPVE
Subjt:  MKRLSWFFSSKPRLGGVRGYSSSKKELQIHGIKHAIAIASGKGGVGKSTTA-----------------------------------------DRNMVPVE

Query:  NYGVKCMSMGLLVENNAALVWRGPM
        +YGVKCMSMGLLVENNAALVWRGPM
Subjt:  NYGVKCMSMGLLVENNAALVWRGPM

SwissProt top hits

e value

%identity

Alignment

P50863 Iron-sulfur cluster carrier protein

3.0e-06

36.36

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Query:  IAIASGKGGVGKSTTA---------------------------------------DRNMVPVENYGVKCMSMGLLVENNAALVWRGPM
        +A+ASGKGGVGKST +                                          ++PVE +GVK MSMG  VE NA +VWRGPM
Subjt:  IAIASGKGGVGKSTTA---------------------------------------DRNMVPVENYGVKCMSMGLLVENNAALVWRGPM

P72190 Iron-sulfur cluster carrier protein

7.9e-07

33.03

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Query:  KKELQIHG---IKHAIAIASGKGGVGKSTTA------------------------------------------DRNMVPVENYGVKCMSMGLLVENNAAL
        K + QI G   +K+ +A+ASGKGGVGKSTTA                                           +  VP+E +GV+ MSM  L ++N  +
Subjt:  KKELQIHG---IKHAIAIASGKGGVGKSTTA------------------------------------------DRNMVPVENYGVKCMSMGLLVENNAAL

Query:  VWRGPMTQG
        VWRGPM  G
Subjt:  VWRGPMTQG

Q54F15 Iron-sulfur protein NUBPL

3.8e-09

31.71

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Query:  SWFFSSKPRLGGVRGYSSSK-KELQIHGIKHAIAIASGKGGVGKSTTAD------------------------------------------RNMVPVENY
        ++F ++K +L G  G+   +  ++ I GIK+ IA++S KGGVGKST A                                             M+P++NY
Subjt:  SWFFSSKPRLGGVRGYSSSK-KELQIHGIKHAIAIASGKGGVGKSTTAD------------------------------------------RNMVPVENY

Query:  GVKCMSMGLLVENNAALVWRGPM
        G+KCMSMG LV  +  ++WRGPM
Subjt:  GVKCMSMGLLVENNAALVWRGPM

Q8TB37 Iron-sulfur protein NUBPL

3.6e-07

35.29

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Query:  KELQIHGIKHAIAIASGKGGVGKSTTA------------------------------------------DRNMVPVENYGVKCMSMGLLVENNAALVWRG
        K+  I G+K  I +ASGKGGVGKSTTA                                             M P+ NYG+ CMSMG LVE +  +VWRG
Subjt:  KELQIHGIKHAIAIASGKGGVGKSTTA------------------------------------------DRNMVPVENYGVKCMSMGLLVENNAALVWRG

Query:  PM
         M
Subjt:  PM

Q9CWD8 Iron-sulfur protein NUBPL

9.4e-08

36.27

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Query:  KELQIHGIKHAIAIASGKGGVGKSTTA------------------------------------------DRNMVPVENYGVKCMSMGLLVENNAALVWRG
        K+  I G++  I +ASGKGGVGKSTTA                                          +  M P+ NYG+ CMSMG LVE  A LVWRG
Subjt:  KELQIHGIKHAIAIASGKGGVGKSTTA------------------------------------------DRNMVPVENYGVKCMSMGLLVENNAALVWRG

Query:  PM
         M
Subjt:  PM

Arabidopsis top hits

e value

%identity

Alignment

AT4G19540.1 IND1(iron-sulfur protein required for NADH dehydrogenase)-like

7.3e-16

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Query:  ELQIHGIKHAIAIASGKGGVGKSTTA-----------------------------------------DRNMVPVENYGVKCMSMGLLVENNAALVWRGPM
        EL++HG+K  IA+ASGKGGVGKS+TA                                         D  M+PVENYGVKCMSMGLLVE +A LVWRGPM
Subjt:  ELQIHGIKHAIAIASGKGGVGKSTTA-----------------------------------------DRNMVPVENYGVKCMSMGLLVENNAALVWRGPM

Sequences

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CDS sequence

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ATGGGCAGTTCGATTGCTCGTTGCTCGTCGGACCTTTACTGTTGCCGTTCGTCTCCTACAATTCGAAGTGAAGAATTGGAGCTCTCTGTCAAGAAATTCTTCTTCACTGG
CCTTTCAACTACTAAGAAATTCATGAAGCGACTGTCATGGTTCTTCTCCTCTAAACCTAGGCTTGGAGGTGTAAGAGGATATTCCTCGAGCAAAAAGGAGCTGCAAATTC
ATGGAATTAAGCATGCTATAGCCATTGCTTCTGGCAAAGGAGGTGTGGGCAAGTCTACCACTGCAGATAGGAATATGGTTCCTGTTGAGAACTATGGAGTTAAATGCATG
TCAATGGGATTACTCGTGGAAAACAATGCTGCTCTTGTGTGGAGGGGTCCTATGACTCAGGGTAATCAATCGAGTGGGGTGACATTACGTCTTACTCTAGCACCTGCAGT
ACTTGGTTCATTGCTAGGACACATAGCCAGGTTGCCATTGGTGCACCTTGCTGCTATTTCAGGGATTGATTATATGGATTCACCATCTGCATTCTTGCAACTTTATCCAC
CATATTCTCCATCTGCTTTTCTCCCATGA

mRNA sequence

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CGTTGGGCTGAGATGGGCAGTTCGATTGCTCGTTGCTCGTCGGACCTTTACTGTTGCCGTTCGTCTCCTACAATTCGAAGTGAAGAATTGGAGCTCTCTGTCAAGAAATT
CTTCTTCACTGGCCTTTCAACTACTAAGAAATTCATGAAGCGACTGTCATGGTTCTTCTCCTCTAAACCTAGGCTTGGAGGTGTAAGAGGATATTCCTCGAGCAAAAAGG
AGCTGCAAATTCATGGAATTAAGCATGCTATAGCCATTGCTTCTGGCAAAGGAGGTGTGGGCAAGTCTACCACTGCAGATAGGAATATGGTTCCTGTTGAGAACTATGGA
GTTAAATGCATGTCAATGGGATTACTCGTGGAAAACAATGCTGCTCTTGTGTGGAGGGGTCCTATGACTCAGGGTAATCAATCGAGTGGGGTGACATTACGTCTTACTCT
AGCACCTGCAGTACTTGGTTCATTGCTAGGACACATAGCCAGGTTGCCATTGGTGCACCTTGCTGCTATTTCAGGGATTGATTATATGGATTCACCATCTGCATTCTTGC
AACTTTATCCACCATATTCTCCATCTGCTTTTCTCCCATGA

Protein sequence

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MGSSIARCSSDLYCCRSSPTIRSEELELSVKKFFFTGLSTTKKFMKRLSWFFSSKPRLGGVRGYSSSKKELQIHGIKHAIAIASGKGGVGKSTTADRNMVPVENYGVKCM
SMGLLVENNAALVWRGPMTQGNQSSGVTLRLTLAPAVLGSLLGHIARLPLVHLAAISGIDYMDSPSAFLQLYPPYSPSAFLP

Lsi05G009780 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome